isoflavone
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000011262 |
| rosa_multiflora | Rmu_co8171582.1_g000001 Rmu_sc0001784.1_g000020 Rmu_sc0003197.1_g000008 Rmu_sc0010826.1_g000004 |
| rosa_rugosa | Rorug06G0303100 |
| rosa_samantha | Rh4AG200300 Rh6BG423500 Rh6DG416600 |
| rosa_wichuraiana | Rw1G009700 Rw3G002470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 49 |
| AcsI | RAATTY | 1 cut(s) | 142 |
| AdeI | CACNNNGTG | 1 cut(s) | 249 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 162 |
| AgsI | TTSAA | 2 cut(s) | 114, 286 |
| AleI | CACNNNNGTG | 1 cut(s) | 295 |
| AluBI | AGCT | 1 cut(s) | 295 |
| AluI | AGCT | 1 cut(s) | 295 |
| Alw26I | GTCTC | 1 cut(s) | 199 |
| AlwI | GGATC | 1 cut(s) | 49 |
| Ama87I | CYCGRG | 1 cut(s) | 157 |
| ApoI | RAATTY | 1 cut(s) | 142 |
| AspS9I | GGNCC | 1 cut(s) | 75 |
| AvaI | CYCGRG | 1 cut(s) | 157 |
| AvaII | GGWCC | 1 cut(s) | 75 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 138, 172 |
| BcoDI | GTCTC | 1 cut(s) | 199 |
| Bme18I | GGWCC | 1 cut(s) | 75 |
| BmeT110I | CYCGRG | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 1 cut(s) | 75 |
| BpuEI | CTTGAG | 1 cut(s) | 70 |
| BsaI | GGTCTC | 1 cut(s) | 199 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 162 |
| Bse1I | ACTGG | 1 cut(s) | 125 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 162 |
| BseNI | ACTGG | 1 cut(s) | 125 |
| BseRI | GAGGAG | 1 cut(s) | 178 |
| BsiHKCI | CYCGRG | 1 cut(s) | 157 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 162 |
| BsmAI | GTCTC | 1 cut(s) | 199 |
| Bso31I | GGTCTC | 1 cut(s) | 199 |
| BsoBI | CYCGRG | 1 cut(s) | 157 |
| Bsp143I | GATC | 3 cut(s) | 54, 236, 264 |
| BspPI | GGATC | 1 cut(s) | 49 |
| BspTNI | GGTCTC | 1 cut(s) | 199 |
| BsrI | ACTGG | 1 cut(s) | 125 |
| BssMI | GATC | 3 cut(s) | 54, 236, 264 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 160 |
| BstKTI | GATC | 3 cut(s) | 57, 239, 267 |
| BstMAI | GTCTC | 1 cut(s) | 199 |
| BstMBI | GATC | 3 cut(s) | 54, 236, 264 |
| BtsIMutI | CAGTG | 1 cut(s) | 64 |
| Cfr13I | GGNCC | 1 cut(s) | 75 |
| CviJI | RGCY | 3 cut(s) | 90, 154, 295 |
| CviKI_1 | RGCY | 3 cut(s) | 90, 154, 295 |
| DpnI | GATC | 3 cut(s) | 56, 238, 266 |
| DpnII | GATC | 3 cut(s) | 54, 236, 264 |
| DraIII | CACNNNGTG | 1 cut(s) | 249 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| Eco31I | GGTCTC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 75 |
| Eco88I | CYCGRG | 1 cut(s) | 157 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 160 |
| EcoO109I | RGGNCCY | 1 cut(s) | 75 |
| FaiI | YATR | 2 cut(s) | 170, 202 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 3 cut(s) | 159, 175, 279 |
| HpyAV | CCTTC | 1 cut(s) | 156 |
| Kzo9I | GATC | 3 cut(s) | 54, 236, 264 |
| LpnPI | CCDG | 2 cut(s) | 106, 188 |
| MalI | GATC | 3 cut(s) | 56, 238, 266 |
| MboI | GATC | 3 cut(s) | 54, 236, 264 |
| MboII | GAAGA | 2 cut(s) | 28, 150 |
| MluCI | AATT | 2 cut(s) | 142, 316 |
| MnlI | CCTC | 9 cut(s) | 12, 88, 94, 101, 166, 171, 199, 294, 319 |
| MseI | TTAA | 1 cut(s) | 324 |
| MslI | CAYNNNNRTG | 1 cut(s) | 295 |
| MspA1I | CMGCKG | 1 cut(s) | 295 |
| NdeII | GATC | 3 cut(s) | 54, 236, 264 |
| OliI | CACNNNNGTG | 1 cut(s) | 295 |
| PaeR7I | CTCGAG | 1 cut(s) | 157 |
| PpuMI | RGGWCCY | 1 cut(s) | 75 |
| Psp5II | RGGWCCY | 1 cut(s) | 75 |
| PspPI | GGNCC | 1 cut(s) | 75 |
| PspPPI | RGGWCCY | 1 cut(s) | 75 |
| PvuII | CAGCTG | 1 cut(s) | 295 |
| RseI | CAYNNNNRTG | 1 cut(s) | 295 |
| SaqAI | TTAA | 1 cut(s) | 324 |
| Sau3AI | GATC | 3 cut(s) | 54, 236, 264 |
| Sau96I | GGNCC | 1 cut(s) | 75 |
| SetI | ASST | 6 cut(s) | 34, 77, 86, 167, 297, 311 |
| Sfr274I | CTCGAG | 1 cut(s) | 157 |
| SinI | GGWCC | 1 cut(s) | 75 |
| SlaI | CTCGAG | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 295 |
| SmlI | CTYRAG | 2 cut(s) | 85, 157 |
| SmoI | CTYRAG | 2 cut(s) | 85, 157 |
| Sse9I | AATT | 2 cut(s) | 142, 316 |
| TaqI | TCGA | 3 cut(s) | 158, 278, 311 |
| TasI | AATT | 2 cut(s) | 142, 316 |
| Tru1I | TTAA | 1 cut(s) | 324 |
| Tru9I | TTAA | 1 cut(s) | 324 |
| TscAI | CASTG | 1 cut(s) | 71 |
| TspDTI | ATGAA | 1 cut(s) | 131 |
| TspRI | CASTG | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 75 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 160 |
| XapI | RAATTY | 1 cut(s) | 142 |
| XhoI | CTCGAG | 1 cut(s) | 157 |