Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001784.1

Orthogroup ID

OG0018227

Physical Location & Seq

Genomic Coordinates Forward (+)

69670 .. 70174

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001784.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaatttgatattgatggagctatctcttttctttgatatttgttatgcagcaatctttaacaaggaagaggatattggtacctataccattaaggctgtggatgacccaagaacattgaacaagatcctctacatccggccacctgccaacaccttctccttcaacgaacttgtggctctttgggagaagaagattggaaaaaccctcgagaaggtctatgtcccagaggagcaactactcaaaaacattcaagaggctgaggttccaatcaatgtgatactggcaatcggtcactcagtttttgtgaaaggagaccacactaactttgagatcgagccctcatttggagtggaagctactgctctttaccctgatgtcaaatacactactgtggatgagtacctctcccagttcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

140

Amino Acids

16.01

Weight (kDa)

4.63

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018227)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011262
rosa_multiflora	Rmu_co8171582.1_g000001 Rmu_sc0001784.1_g000020 Rmu_sc0003197.1_g000008 Rmu_sc0010826.1_g000004
rosa_rugosa	Rorug06G0303100
rosa_samantha	Rh4AG200300 Rh6BG423500 Rh6DG416600
rosa_wichuraiana	Rw1G009700 Rw3G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	2 cut(s)	82, 404
AfiI	CCNNNNNNNGG	2 cut(s)	214, 347
AgsI	TTSAA	3 cut(s)	121, 166, 254
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	22, 359
AluI	AGCT	2 cut(s)	22, 359
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	4
Asp718I	GGTACC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	82, 267
BmrI	ACTGGG	1 cut(s)	406
BmuI	ACTGGG	1 cut(s)	406
BplI	GAGNNNNNCTC	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 347
Bse1I	ACTGG	2 cut(s)	288, 412
BseGI	GGATG	3 cut(s)	109, 135, 403
BseLI	CCNNNNNNNGG	2 cut(s)	214, 347
BseMII	CTCAG	2 cut(s)	252, 312
BseNI	ACTGG	2 cut(s)	288, 412
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	214, 347
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	126, 333
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	253, 311
BspLI	GGNNCC	2 cut(s)	82, 267
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	288, 412
BssMI	GATC	2 cut(s)	126, 333
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	261, 298
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	3 cut(s)	109, 135, 403
BstKTI	GATC	2 cut(s)	129, 336
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	126, 333
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	109, 135, 403
BveI	ACCTGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	81, 403
CviJI	RGCY	7 cut(s)	22, 98, 142, 179, 260, 340, 359
CviKI_1	RGCY	7 cut(s)	22, 98, 142, 179, 260, 340, 359
CviQI	GTAC	2 cut(s)	81, 403
DdeI	CTNAG	2 cut(s)	261, 298
DpnI	GATC	2 cut(s)	128, 335
DpnII	GATC	2 cut(s)	126, 333
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	342
FaiI	YATR	3 cut(s)	48, 87, 222
FaqI	GGGAC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	116, 122, 410
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	139
HpaII	CCGG	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	2 cut(s)	211, 254
HpyAV	CCTTC	3 cut(s)	166, 172, 208
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	261, 298
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	126, 333
LmnI	GCTCC	2 cut(s)	19, 232
LpnPI	CCDG	5 cut(s)	152, 159, 240, 269, 387
Lsp1109I	GCAGC	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	128, 335
MboI	GATC	2 cut(s)	126, 333
MboII	GAAGA	3 cut(s)	80, 202, 205
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	4
MnlI	CCTC	8 cut(s)	64, 140, 218, 223, 250, 256, 352, 416
MseI	TTAA	2 cut(s)	60, 93
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	126, 333
NlaIV	GGNNCC	2 cut(s)	82, 267
NmuCI	GTSAC	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	209
PaqCI	CACCTGC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	82, 267
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	2 cut(s)	82, 404
RsaNI	GTAC	2 cut(s)	81, 403
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	60, 93
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	126, 333
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	8 cut(s)	24, 86, 148, 158, 219, 267, 361, 408
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	210, 336
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	60, 93
Tru9I	TTAA	2 cut(s)	60, 93
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.