Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003197.1

Orthogroup ID

OG0018227

Physical Location & Seq

Genomic Coordinates Forward (+)

25265 .. 26416

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003197.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcagttagtagatcaaaccaagatcaatgccgccattgaagaagccgaggctgaggggataccctacacatatgtctcgggaaactgctttgcaggctattttctacccacattggcacagccaggtgctacttctccaccaagagacaaagtcatcatcgtaggggatggagatccaaaggcaatctttgtcaaggaagaggacatcagcacctacacaatccgagcagttgatgatccaagaacactgaacaaggtcctctacctcaagcctcccaaaaacatttactcattcaatgaactggttgccttgtgggagaagaaatttggcaaagccctcgggaaggtctatgttccagaggacaaactcctcaacgatattatagagaccccatttccccaaaatgtgatattggcgatcaaccactctgtgtttgtgaaaggagatcaaaccaacttcgagattgaatacacagctgtggaggactacctcgaccaatttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

169

Amino Acids

18.95

Weight (kDa)

4.61

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018227)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011262
rosa_multiflora	Rmu_co8171582.1_g000001 Rmu_sc0001784.1_g000020 Rmu_sc0003197.1_g000008 Rmu_sc0010826.1_g000004
rosa_rugosa	Rorug06G0303100
rosa_samantha	Rh4AG200300 Rh6BG423500 Rh6DG416600
rosa_wichuraiana	Rw1G009700 Rw3G002470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	170, 233
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	41, 298, 470
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw26I	GTCTC	3 cut(s)	82, 141, 383
AlwI	GGATC	2 cut(s)	170, 233
Ama87I	CYCGRG	2 cut(s)	79, 341
ApoI	RAATTY	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	259
AvaI	CYCGRG	2 cut(s)	79, 341
AvaII	GGWCC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	54
BcoDI	GTCTC	3 cut(s)	82, 141, 383
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	2 cut(s)	79, 341
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	48, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	48, 340
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	79, 341
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	3 cut(s)	82, 141, 383
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	2 cut(s)	79, 341
Bsp143I	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	46
BspPI	GGATC	2 cut(s)	170, 233
BspTNI	GGTCTC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	48, 340
BssMI	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
Bst2UI	CCWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	54
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	6 cut(s)	16, 27, 178, 241, 423, 451
BstMAI	GTCTC	3 cut(s)	82, 141, 383
BstMBI	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	259
CviJI	RGCY	7 cut(s)	47, 53, 99, 124, 274, 338, 479
CviKI_1	RGCY	7 cut(s)	47, 53, 99, 124, 274, 338, 479
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	6 cut(s)	15, 26, 177, 240, 422, 450
DpnII	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	79, 341
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	124
FaiI	YATR	4 cut(s)	73, 75, 354, 386
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	4 cut(s)	81, 343, 359, 463
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	2 cut(s)	4, 95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
LpnPI	CCDG	5 cut(s)	81, 111, 138, 290, 372
MalI	GATC	6 cut(s)	15, 26, 177, 240, 422, 450
MboI	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
MboII	GAAGA	3 cut(s)	53, 212, 334
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	2 cut(s)	326, 500
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
NmeAIII	GCCGAG	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	6 cut(s)	13, 24, 175, 238, 420, 448
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	7 cut(s)	130, 218, 261, 270, 351, 481, 495
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	326, 500
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	2 cut(s)	462, 495
TasI	AATT	2 cut(s)	326, 500
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	255
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.