Rmu_co8180264.1_g000001

At1g04910-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8180264.1
Physical Location & Seq
Reverse (-)
2 .. 685
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8180264.1_g000001.1.cds

Sequence Viewer

Length: 269 bp
ccgtaaatattgcagcggccgatgtgaaaacgcttcccaatcggtacttgttgattgctaccagtggaggcttgaatcaacagagaacagggataacagatgctgttgttgcagcttatattttaaatgctactcttgttgttccgaagctggaccatcaatcattttggaaggattccagcaactttgctgagatctttgatgtagactggttcatatcttttctgtcaaatgatgtcaaaatcattaaaaagcttccatcgaaggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.79

Weight (kDa)

8.22

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019668)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AciI CCGC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 17
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 75
AluBI AGCT 3 cut(s) 115, 150, 255
AluI AGCT 3 cut(s) 115, 150, 255
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 13, 112
AspS9I GGNCC 1 cut(s) 153
AvaII GGWCC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 25, 124
BccI CCATC 2 cut(s) 164, 267
BglII AGATCT 1 cut(s) 194
BisI GCNGC 3 cut(s) 14, 17, 113
BlsI GCNGC 3 cut(s) 15, 18, 114
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmsI GCATC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 62, 214
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 62, 214
BseX3I CGGCCG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 25, 124
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 265
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 62, 214
BssMI GATC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 191
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 25, 124
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BstZI CGGCCG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 45
CviJI RGCY 5 cut(s) 19, 71, 115, 150, 255
CviKI_1 RGCY 5 cut(s) 19, 71, 115, 150, 255
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
DraI TTTAAA 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 17
EagI CGGCCG 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 17
FaiI YATR 2 cut(s) 119, 217
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 14, 17, 113
Fsp4HI GCNGC 3 cut(s) 14, 17, 113
GluI GCNGC 3 cut(s) 14, 17, 113
HaeIII GGCC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 2 cut(s) 75, 175
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 165, 258
HpyCH4V TGCA 2 cut(s) 13, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 191
Kzo9I GATC 1 cut(s) 194
LpnPI CCDG 5 cut(s) 74, 75, 136, 192, 195
Lsp1109I GCAGC 2 cut(s) 25, 124
LweI GCATC 1 cut(s) 90
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MflI RGATCY 1 cut(s) 194
MnlI CCTC 1 cut(s) 61
MseI TTAA 2 cut(s) 124, 248
MspA1I CMGCKG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 1 cut(s) 194
PfeI GAWTC 2 cut(s) 75, 175
PkrI GCNGC 3 cut(s) 15, 18, 114
PspPI GGNCC 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 124, 248
SatI GCNGC 3 cut(s) 14, 17, 113
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 153
SetI ASST 3 cut(s) 117, 152, 257
SfaNI GCATC 1 cut(s) 90
SgeI CNNG 8 cut(s) 60, 74, 84, 101, 148, 163, 191, 222
SinI GGWCC 1 cut(s) 153
SsiI CCGC 1 cut(s) 16
SspI AATATT 1 cut(s) 9
TaqI TCGA 1 cut(s) 262
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 2 cut(s) 75, 175
Tru1I TTAA 2 cut(s) 124, 248
Tru9I TTAA 2 cut(s) 124, 248
TscAI CASTG 1 cut(s) 69
TseI GCWGC 2 cut(s) 13, 112
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.