Rh7AG196300

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019668
Physical Location & Seq
Forward (+)
17668841 .. 17679562
10722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG196300.1

Sequence Viewer

Length: 654 bp
ATGAAGAACGCGGTGGATCTGAACCAACTAGGTACCTTCCGATTTGCTACCAATATCTTCCGATTTTCCAGATCTCCTACCTCCGTCGCTCAAAATCTTCTGGTGAAGCAACTTCCTGAGATCTTTGATGTAGACTGGTTCATATCTTTTCTGTCAAATGATGTCAAAATCATTAAAAAGCTTCCTTCGAAGGGAGGGAAACCAATGAGTCCATATACCATGCGTGTCCCGAGGAAGTGTAATGTGAAATGCTACCTGAATCGCGTAGTGCCTGTTCTTAATAAAAAGCATGCTGTTCAGCTCACAAAGTTTGATTACAGGCTTTCAAATAACCTGGAATCACATTTACAGAAGCTGAGATGTAGGACTAATTATCACGCCTTGAAATTTACTGACAATATTAATGAAATGGGGAGGAAGTTGGTTGAGAGAATGAAGATGAAAAACAAGCATTTCATTGCCCTGCATTTGAGGTATAACCATGGCAGACCACAAAACATCTTTTACAAAGCAGTTAACATTCCTGACCTGAAGGCTGATTTGAAGGCAGAGTCAAAGCTGGCAAAACGACCTGATTTGAAGGCATTAACCAAGGCAAGTATCCATTGGCACTGTTTCCTTGATAAAATTGTGTTCTTAATCTTAAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

217

Amino Acids

25.4

Weight (kDa)

10.24

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 40 - 160 1.3e-31 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019668)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16370
malus_domestica MD10G1136800.v1.1
rosa_multiflora Rmu_co8180264.1_g000001 Rmu_sc0007472.1_g000012 Rmu_sc0009634.1_g000008 Rmu_sc0040469.1_g000001
rosa_samantha Rh7AG196300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 132
AccII CGCG 2 cut(s) 11, 264
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 551
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 4 cut(s) 327, 385, 544, 580
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 4 cut(s) 181, 301, 355, 559
AluI AGCT 4 cut(s) 181, 301, 355, 559
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 229
ApoI RAATTY 1 cut(s) 386
AseI ATTAAT 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 115
AsuII TTCGAA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 229
BanI GGYRCC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 1 cut(s) 611
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 611
BglII AGATCT 2 cut(s) 71, 120
Bme1390I CCNGG 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 335
Bpu14I TTCGAA 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 230, 481, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 230, 481, 591
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 108, 347
BseNI ACTGG 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 11, 264
BshNI GGYRCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 188
Bsp143I GATC 3 cut(s) 16, 71, 120
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 109, 348
BspFNI CGCG 2 cut(s) 11, 264
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 230, 481, 591
BssMI GATC 3 cut(s) 16, 71, 120
BssT1I CCWWGG 2 cut(s) 481, 591
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 291, 561
BstDEI CTNAG 2 cut(s) 117, 356
BstDSI CCRYGG 1 cut(s) 481
BstFNI CGCG 2 cut(s) 11, 264
BstKTI GATC 3 cut(s) 19, 74, 123
BstMBI GATC 3 cut(s) 16, 71, 120
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 333
BstUI CGCG 2 cut(s) 11, 264
BstX2I RGATCY 3 cut(s) 16, 71, 120
BstYI RGATCY 3 cut(s) 16, 71, 120
BsuI GTATCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 481
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 291, 561
CaiI CAGNNNCTG 1 cut(s) 355
Csp6I GTAC 1 cut(s) 33
CviAII CATG 3 cut(s) 220, 290, 482
CviJI RGCY 6 cut(s) 181, 301, 322, 355, 536, 559
CviKI_1 RGCY 6 cut(s) 181, 301, 322, 355, 536, 559
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 2 cut(s) 117, 356
DpnI GATC 3 cut(s) 18, 73, 122
DpnII GATC 3 cut(s) 16, 71, 120
Eco130I CCWWGG 2 cut(s) 481, 591
Eco57I CTGAAG 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 481, 591
ErhI CCWWGG 2 cut(s) 481, 591
FaeI CATG 3 cut(s) 223, 293, 485
FaiI YATR 7 cut(s) 143, 214, 216, 221, 291, 477, 483
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 219, 289, 481
FblI GTMKAC 1 cut(s) 132
FspBI CTAG 1 cut(s) 29
Hin1II CATG 3 cut(s) 223, 293, 485
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 4 cut(s) 208, 259, 338, 551
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 133, 517
Hpy188I TCNGA 3 cut(s) 21, 41, 62
Hpy188III TCNNGA 4 cut(s) 69, 116, 229, 524
Hpy8I GTNNAC 2 cut(s) 133, 517
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 6 cut(s) 46, 184, 195, 526, 538, 574
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4V TGCA 1 cut(s) 466
HpyF3I CTNAG 2 cut(s) 117, 356
Hsp92II CATG 3 cut(s) 223, 293, 485
KpnI GGTACC 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 16, 71, 120
MaeI CTAG 1 cut(s) 29
MalI GATC 3 cut(s) 18, 73, 122
MboI GATC 3 cut(s) 16, 71, 120
MboII GAAGA 4 cut(s) 16, 49, 89, 448
MflI RGATCY 3 cut(s) 16, 71, 120
MluCI AATT 3 cut(s) 370, 386, 627
MlyI GAGTC 2 cut(s) 217, 560
MnlI CCTC 5 cut(s) 91, 188, 225, 408, 465
MseI TTAA 7 cut(s) 174, 279, 402, 516, 587, 638, 644
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 2 cut(s) 11, 264
NcoI CCATGG 1 cut(s) 481
NdeII GATC 3 cut(s) 16, 71, 120
NlaIII CATG 3 cut(s) 223, 293, 485
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 293
NspV TTCGAA 1 cut(s) 188
PaeI GCATGC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 259, 338
PleI GAGTC 2 cut(s) 216, 559
PpsI GAGTC 2 cut(s) 216, 559
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 34
PsrI GAACNNNNNNTAC 2 cut(s) 258, 290
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 3 cut(s) 16, 71, 120
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 7 cut(s) 174, 279, 402, 516, 587, 638, 644
Sau3AI GATC 3 cut(s) 16, 71, 120
SchI GAGTC 2 cut(s) 217, 560
ScrFI CCNGG 1 cut(s) 335
SfuI TTCGAA 1 cut(s) 188
SphI GCATGC 1 cut(s) 293
Sse9I AATT 3 cut(s) 370, 386, 627
SsiI CCGC 1 cut(s) 11
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 2 cut(s) 481, 591
TaaI ACNGT 1 cut(s) 614
TaqI TCGA 1 cut(s) 188
TasI AATT 3 cut(s) 370, 386, 627
TfiI GAWTC 2 cut(s) 259, 338
Tru1I TTAA 7 cut(s) 174, 279, 402, 516, 587, 638, 644
Tru9I TTAA 7 cut(s) 174, 279, 402, 516, 587, 638, 644
TscAI CASTG 1 cut(s) 617
TspDTI ATGAA 6 cut(s) 17, 130, 420, 445, 449, 455
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 617
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 1 cut(s) 386
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.