Rmu_sc0040469.1_g000001

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040469.1
OG0019668
Physical Location & Seq
Reverse (-)
2 .. 2152
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040469.1_g000001.1.cds

Sequence Viewer

Length: 779 bp
atggtcgagaggcgattgatgtttggaagtccaagtactcgaaattctactacggttgcagtgaaagaggtcggcattatcctcgagaaggcatcgaatggatatttgctgattgcaactagtggagggttgaaccagcaaagaacaggaataacagatgcagtggttgtggcccgaattcttaatgctaccttggttgtgcctgagctggatcatcattcctattggaaggatgatagtgactttgtaaatatttttgatgtcgaatggttcatgtcttctcttgcgaaagatgtgacaattgttcggagagttcctgaaaaagttatgaggagcatggataaacctccatataccatgcgtgttccgaggaaatctgagcctgaatactatattgatcaagttttaccaatacttttgaggagacgtgttctgcaactgacaaagtttgattatagactttcgagtaaccttgatgatgagctgcaaaagttgcgttgtcgtgttaattatcatgcacttagatttacaaaatctatcaatgagctgggtcagaaacttgttatgagaatgcgacagatggcaacacgcttcgttgctgtccacttgaggtttgaacctgatatgctagcattttctgggtgttactatggtgggggtgataaagagagatatgagcttgctgaaataagaaaacgatgggcaactttacctgatttaagccctcttgatgagcgaaaacgaggaaaatgtccgctgactcctcatgaagttggtct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

260

Amino Acids

30.08

Weight (kDa)

9.47

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019668)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16370
malus_domestica MD10G1136800.v1.1
rosa_multiflora Rmu_co8180264.1_g000001 Rmu_sc0007472.1_g000012 Rmu_sc0009634.1_g000008 Rmu_sc0040469.1_g000001
rosa_samantha Rh7AG196300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 755
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 43, 177
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 2 cut(s) 133, 617
AhlI ACTAGT 1 cut(s) 119
AjiI CACGTC 1 cut(s) 428
AluBI AGCT 4 cut(s) 208, 484, 547, 679
AluI AGCT 4 cut(s) 208, 484, 547, 679
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 2 cut(s) 43, 177
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 671
AsuNHI GCTAGC 1 cut(s) 628
AvaI CYCGRG 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 574, 693
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 418
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 2 cut(s) 120, 629
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
BmcAI AGTACT 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 101, 148
BmtI GCTAGC 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 192, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 192, 368
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 195, 369
BseRI GAGGAG 3 cut(s) 346, 436, 753
BseXI GCAGC 1 cut(s) 471
BseYI CCCAGC 1 cut(s) 547
BshFI GGCC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 418
BsmBI CGTCTC 1 cut(s) 418
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 83
Bsp143I GATC 2 cut(s) 211, 397
BspACI CCGC 1 cut(s) 755
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 196, 370
BspHI TCATGA 1 cut(s) 766
BspOI GCTAGC 1 cut(s) 632
BspPI GGATC 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 192, 368
BssMI GATC 2 cut(s) 211, 397
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 493
BstC8I GCNNGC 2 cut(s) 630, 681
BstDEI CTNAG 3 cut(s) 204, 378, 521
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 214, 400
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 2 cut(s) 211, 397
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 471
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 173
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 2 cut(s) 66, 168
BtsIMutI CAGTG 2 cut(s) 66, 168
Cac8I GCNNGC 2 cut(s) 630, 681
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 36
CviAII CATG 5 cut(s) 274, 337, 358, 515, 767
CviJI RGCY 7 cut(s) 173, 208, 382, 484, 547, 679, 723
CviKI_1 RGCY 7 cut(s) 173, 208, 382, 484, 547, 679, 723
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 3 cut(s) 204, 378, 521
DpnI GATC 2 cut(s) 213, 399
DpnII GATC 2 cut(s) 211, 397
Eco130I CCWWGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 5 cut(s) 277, 340, 361, 518, 770
FatI CATG 5 cut(s) 273, 336, 357, 514, 766
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 485
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 485
FspBI CTAG 2 cut(s) 120, 629
GluI GCNGC 1 cut(s) 485
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 5 cut(s) 277, 340, 361, 518, 770
HinfI GANTC 1 cut(s) 760
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 4 cut(s) 309, 369, 379, 555
Hpy188III TCNNGA 5 cut(s) 7, 85, 317, 728, 767
Hpy8I GTNNAC 1 cut(s) 604
HpyAV CCTTC 2 cut(s) 82, 223
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 6 cut(s) 59, 116, 161, 436, 487, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 3 cut(s) 204, 378, 521
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 5 cut(s) 277, 340, 361, 518, 770
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 211, 397
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 471
LweI GCATC 2 cut(s) 101, 148
MaeI CTAG 2 cut(s) 120, 629
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 4 cut(s) 239, 295, 467, 644
MalI GATC 2 cut(s) 213, 399
MboI GATC 2 cut(s) 211, 397
MboII GAAGA 1 cut(s) 270
MfeI CAATTG 1 cut(s) 300
MluCI AATT 4 cut(s) 43, 177, 300, 508
MlyI GAGTC 1 cut(s) 754
MseI TTAA 3 cut(s) 183, 507, 719
MspA1I CMGCKG 1 cut(s) 757
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 576
MwoI GCNNNNNNNGC 1 cut(s) 493
NdeII GATC 2 cut(s) 211, 397
NheI GCTAGC 1 cut(s) 628
NlaIII CATG 5 cut(s) 277, 340, 361, 518, 770
NmuCI GTSAC 2 cut(s) 239, 295
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 766
PctI GAATGC 1 cut(s) 576
PkrI GCNGC 1 cut(s) 486
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
PspFI CCCAGC 1 cut(s) 547
PspPI GGNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 183, 507, 719
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 2 cut(s) 211, 397
Sau96I GGNCC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 37
SchI GAGTC 1 cut(s) 754
SfaNI GCATC 2 cut(s) 101, 148
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 83, 607
SmoI CTYRAG 2 cut(s) 83, 607
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 4 cut(s) 43, 177, 300, 508
SsiI CCGC 1 cut(s) 755
SspI AATATT 1 cut(s) 253
SspMI CTAG 2 cut(s) 120, 629
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 430
TaqI TCGA 6 cut(s) 6, 40, 84, 95, 264, 464
TasI AATT 4 cut(s) 43, 177, 300, 508
TatI WGTACW 1 cut(s) 35
Tru1I TTAA 3 cut(s) 183, 507, 719
Tru9I TTAA 3 cut(s) 183, 507, 719
TscAI CASTG 2 cut(s) 66, 168
TseFI GTSAC 2 cut(s) 239, 295
TseI GCWGC 1 cut(s) 484
Tsp45I GTSAC 2 cut(s) 239, 295
TspDTI ATGAA 1 cut(s) 262
TspRI CASTG 2 cut(s) 66, 168
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 2 cut(s) 43, 177
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 2 cut(s) 120, 629
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.