Rmu_sc0007472.1_g000012

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007472.1
OG0019668
Physical Location & Seq
Forward (+)
38823 .. 39862
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007472.1_g000012.1.cds

Sequence Viewer

Length: 474 bp
atgaagaacgcggtggatctgaaccaactaggtacctttcgatttgctaccaatatcttccgattttccagatctcctacctccattgctcaaaatcttctggtgaagataacagatgatgttgttgcagcttatattttaaatgctacttttgttgttccgaagttggaccatcaatcattttggaaggattccagcaacttcgttgagatctttgatgtagactggttcatatcttttctgtcaaatggtgtcaaaatcattaaaaagcttccatcgaagggagggaaaccaatgagttcatataccatgcgtgtcccgaggaagtgtaatgtgaaatgctacctgaatcacgtagtgcctgttcttaataaaaagcatgctgttcagcttgcaaagtttgattacagtctttcaaataacctggaatcacatttacagaagttgagatgtaggaccattatcacgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

157

Amino Acids

17.94

Weight (kDa)

9.89

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019668)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16370
malus_domestica MD10G1136800.v1.1
rosa_multiflora Rmu_co8180264.1_g000001 Rmu_sc0007472.1_g000012 Rmu_sc0009634.1_g000008 Rmu_sc0040469.1_g000001
rosa_samantha Rh7AG196300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 417
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 3 cut(s) 131, 271, 391
AluI AGCT 3 cut(s) 131, 271, 391
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 169, 456
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 2 cut(s) 169, 456
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 180, 283
BciT130I CCWGG 1 cut(s) 425
BfaI CTAG 1 cut(s) 29
BglII AGATCT 2 cut(s) 71, 210
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 2 cut(s) 169, 456
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 169, 456
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 3 cut(s) 16, 71, 210
BspACI CCGC 1 cut(s) 11
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 3 cut(s) 16, 71, 210
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 381, 393
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 3 cut(s) 19, 74, 213
BstMBI GATC 3 cut(s) 16, 71, 210
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 423
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 16, 71, 210
BstYI RGATCY 3 cut(s) 16, 71, 210
Cac8I GCNNGC 2 cut(s) 381, 393
Cfr13I GGNCC 2 cut(s) 169, 456
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 310, 380
CviJI RGCY 3 cut(s) 131, 271, 391
CviKI_1 RGCY 3 cut(s) 131, 271, 391
CviQI GTAC 1 cut(s) 33
DpnI GATC 3 cut(s) 18, 73, 212
DpnII GATC 3 cut(s) 16, 71, 210
DraI TTTAAA 1 cut(s) 141
DraIII CACNNNGTG 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 169, 456
Eco88I CYCGRG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 423
FaeI CATG 2 cut(s) 313, 383
FaiI YATR 6 cut(s) 135, 233, 304, 306, 311, 381
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 309, 379
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 313, 383
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 3 cut(s) 191, 349, 428
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 21, 62, 162
Hpy188III TCNNGA 2 cut(s) 69, 319
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 181, 274
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 128, 395
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 2 cut(s) 313, 383
KpnI GGTACC 1 cut(s) 36
Kzo9I GATC 3 cut(s) 16, 71, 210
LpnPI CCDG 8 cut(s) 82, 86, 208, 211, 359, 375, 410, 437
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 354
MalI GATC 3 cut(s) 18, 73, 212
MboI GATC 3 cut(s) 16, 71, 210
MboII GAAGA 4 cut(s) 16, 49, 89, 118
MflI RGATCY 3 cut(s) 16, 71, 210
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 91, 278, 315
MseI TTAA 3 cut(s) 140, 264, 369
MspR9I CCNGG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 11
NdeII GATC 3 cut(s) 16, 71, 210
NlaIII CATG 2 cut(s) 313, 383
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 191, 349, 428
PkrI GCNGC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 169, 456
PsrI GAACNNNNNNTAC 2 cut(s) 348, 380
PsuI RGATCY 3 cut(s) 16, 71, 210
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 140, 264, 369
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 16, 71, 210
Sau96I GGNCC 2 cut(s) 169, 456
ScrFI CCNGG 1 cut(s) 425
SetI ASST 9 cut(s) 34, 38, 83, 133, 273, 348, 357, 393, 426
SinI GGWCC 2 cut(s) 169, 456
SphI GCATGC 1 cut(s) 383
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 1 cut(s) 357
TaqI TCGA 2 cut(s) 40, 278
TfiI GAWTC 3 cut(s) 191, 349, 428
Tru1I TTAA 3 cut(s) 140, 264, 369
Tru9I TTAA 3 cut(s) 140, 264, 369
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 17, 220, 291
VpaK11BI GGWCC 2 cut(s) 169, 456
XceI RCATGY 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.