Rmu_sc0009634.1_g000008

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009634.1
OG0019668
Physical Location & Seq
Reverse (-)
33270 .. 36131
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009634.1_g000008.1.cds

Sequence Viewer

Length: 792 bp
atgaagaatgcagtggatctgaaccaactaggtaccttccgatttgctaccaatatcttccgattttccagatctcctacctccgtcgctcaaaatcttctggtgaagataacagatgatgttgttgcagcttatattttaaatgctactcttgttgttccgaagctggaccatcaatcattttggaaggattccagtaacttcactgagatctttgatgtagactggttcatatcttttctatcaaatgatgtcaaaatcattaaaaagcttccatcgaagggagggaaaccaatgactccatataccatgcgtgtcccaaggaagtgtaatgtgaaatgctacctgaatcgcgtagtgcctgttcttaataaaaagcatgctgttcagctcacaaagtttgattacaggctttttaataacctagaatcacatttacaaaagctgagatgtaggactaattatcacgccttgaaatttactgacaatatgaatgaaatggggaggaagttggttgagagaatgaagatgaaaaacaagcatttcattgccctgcatttgagaccacaaaacatcttttacaaagcagttaacattccaaacctggttgttttcccgcgcttttgtgacctcgccgaaaatctcaccagcgtagcttttgttgctagtaacatagcttttgtagtagccggagttcgtcagaagttggccggagacccgccggagttggccggaggttcgccggagttgaccggagacctcgccggagagaagagagagaatgattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

263

Amino Acids

29.98

Weight (kDa)

9.7

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019668)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16370
malus_domestica MD10G1136800.v1.1
rosa_multiflora Rmu_co8180264.1_g000001 Rmu_sc0007472.1_g000012 Rmu_sc0009634.1_g000008 Rmu_sc0040469.1_g000001
rosa_samantha Rh7AG196300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 222
AccII CGCG 2 cut(s) 354, 619
AciI CCGC 2 cut(s) 617, 719
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 2 cut(s) 708, 729
AcsI RAATTY 1 cut(s) 476
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 475
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 7 cut(s) 131, 166, 271, 391, 445, 656, 677
AluI AGCT 7 cut(s) 131, 166, 271, 391, 445, 656, 677
Alw26I GTCTC 3 cut(s) 556, 708, 750
AlwI GGATC 1 cut(s) 24
AoxI GGCC 2 cut(s) 708, 729
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 476
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 115, 637
AvaII GGWCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 180, 283
BciT130I CCWGG 1 cut(s) 605
BcoDI GTCTC 3 cut(s) 556, 708, 750
BfaI CTAG 3 cut(s) 29, 425, 666
BglII AGATCT 2 cut(s) 71, 210
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 605
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 605
BsaI GGTCTC 3 cut(s) 556, 708, 750
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 752
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 195, 230
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 198, 437
BseNI ACTGG 2 cut(s) 195, 230
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 354, 619
BshFI GGCC 2 cut(s) 710, 731
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 7 cut(s) 690, 711, 722, 732, 743, 753, 765
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 556, 708, 750
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 2 cut(s) 710, 731
Bso31I GGTCTC 3 cut(s) 556, 708, 750
Bsp143I GATC 3 cut(s) 16, 71, 210
BspACI CCGC 2 cut(s) 617, 719
BspANI GGCC 2 cut(s) 710, 731
BspCNI CTCAG 2 cut(s) 199, 438
BspFNI CGCG 2 cut(s) 354, 619
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 3 cut(s) 556, 708, 750
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 2 cut(s) 195, 230
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 3 cut(s) 16, 71, 210
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 605
Bst6I CTCTTC 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 207, 446
BstFNI CGCG 2 cut(s) 354, 619
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 3 cut(s) 19, 74, 213
BstMAI GTCTC 3 cut(s) 556, 708, 750
BstMBI GATC 3 cut(s) 16, 71, 210
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 603
BstUI CGCG 2 cut(s) 354, 619
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 16, 71, 210
BstYI RGATCY 3 cut(s) 16, 71, 210
BsuRI GGCC 2 cut(s) 710, 731
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 204
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 603
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 310, 380
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 2 cut(s) 207, 446
DpnI GATC 3 cut(s) 18, 73, 212
DpnII GATC 3 cut(s) 16, 71, 210
DraI TTTAAA 1 cut(s) 141
EaeI YGGCCR 2 cut(s) 708, 729
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 320
Eco31I GGTCTC 3 cut(s) 556, 708, 750
Eco47I GGWCC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 313, 383
FaiI YATR 8 cut(s) 135, 233, 304, 306, 311, 381, 491, 674
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 309, 379
FauI CCCGC 2 cut(s) 624, 726
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 3 cut(s) 29, 425, 666
GlaI GCGC 1 cut(s) 620
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 2 cut(s) 710, 731
HapII CCGG 7 cut(s) 690, 711, 722, 732, 743, 753, 765
HhaI GCGC 1 cut(s) 621
Hin1II CATG 2 cut(s) 313, 383
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HincII GTYRAC 2 cut(s) 592, 750
HindII GTYRAC 2 cut(s) 592, 750
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 4 cut(s) 191, 298, 349, 428
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 7 cut(s) 690, 711, 722, 732, 743, 753, 765
HphI GGTGA 2 cut(s) 115, 637
Hpy166II GTNNAC 3 cut(s) 223, 592, 750
Hpy188I TCNGA 5 cut(s) 21, 41, 62, 162, 702
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 3 cut(s) 223, 592, 750
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 46, 181, 274
HpyCH4V TGCA 3 cut(s) 11, 128, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 2 cut(s) 207, 446
Hsp92II CATG 2 cut(s) 313, 383
HspAI GCGC 1 cut(s) 619
KpnI GGTACC 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 3 cut(s) 16, 71, 210
Lsp1109I GCAGC 1 cut(s) 140
MabI ACCWGGT 1 cut(s) 603
MaeI CTAG 3 cut(s) 29, 425, 666
MaeIII GTNAC 3 cut(s) 197, 626, 668
MalI GATC 3 cut(s) 18, 73, 212
MboI GATC 3 cut(s) 16, 71, 210
MboII GAAGA 6 cut(s) 16, 49, 89, 118, 538, 784
MflI RGATCY 3 cut(s) 16, 71, 210
MluCI AATT 2 cut(s) 460, 476
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 6 cut(s) 91, 278, 498, 641, 728, 770
MseI TTAA 5 cut(s) 140, 264, 369, 417, 591
MspI CCGG 7 cut(s) 690, 711, 722, 732, 743, 753, 765
MspR9I CCNGG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 605
MvnI CGCG 2 cut(s) 354, 619
MwoI GCNNNNNNNGC 1 cut(s) 662
NdeII GATC 3 cut(s) 16, 71, 210
NlaIII CATG 2 cut(s) 313, 383
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 626
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 3 cut(s) 191, 349, 428
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 603
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 169
PsrI GAACNNNNNNTAC 4 cut(s) 348, 380, 678, 710
PsuI RGATCY 3 cut(s) 16, 71, 210
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 140, 264, 369, 417, 591
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 16, 71, 210
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 605
SexAI ACCWGGT 1 cut(s) 603
SinI GGWCC 1 cut(s) 169
SphI GCATGC 1 cut(s) 383
Sse9I AATT 2 cut(s) 460, 476
SsiI CCGC 2 cut(s) 617, 719
SspMI CTAG 3 cut(s) 29, 425, 666
StyD4I CCNGG 1 cut(s) 603
StyI CCWWGG 1 cut(s) 320
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 460, 476
TfiI GAWTC 3 cut(s) 191, 349, 428
Tru1I TTAA 5 cut(s) 140, 264, 369, 417, 591
Tru9I TTAA 5 cut(s) 140, 264, 369, 417, 591
TscAI CASTG 2 cut(s) 18, 211
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 7 cut(s) 17, 220, 506, 510, 535, 539, 545
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 2 cut(s) 18, 211
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 29, 425, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.