Rmu_co8222354.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8222354.1
OG0011177
Physical Location & Seq
Forward (+)
195 .. 503
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8222354.1_g000001.1.cds

Sequence Viewer

Length: 309 bp
atgtctcaccccaacaaacgctcctcatcaaccaccaccacatcctcttcttcttcttctctcacgtcccctcctccgatgaaaaaggccaagtctcactctcagcccgacaccaaaaacggcctccaccaccacacccactccgacaacgacgacgacggccgccgcgcccagcccgacaatttgtcccgcaaaaaggcccagccccctcagcccggcaagaagcagttcgtcatcaaacccttcaaaggttcgccctccttgatcccaaagctacagtcttttcgggtttatacgactgttgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

10.49

Isoelectric Point (pI)

69.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46210
fragaria_vesca FvH4_3g05480 FvH4_3g05480 FvH4_3g05480
malus_domestica MD05G1283200.v1.1 MD10G1261500.v1.1
prunus_persica Prupe.4G081400_v2.0.a1
pyrus_communis pycom05g26250 pycom10g21770
rosa_chinensis RchiOBHm_Chr5g0014271
rosa_laevigata RLG00000032095
rosa_multiflora Rmu_co8222354.1_g000001 Rmu_sc0009295.1_g000011
rosa_roxburghii Rroxscaffold_1G00062300
rosa_rugosa Rorug05G0016700
rosa_samantha Rh5AG111100 Rh5BG108300 Rh5CG119900 Rh5DG106900
rosa_wichuraiana Rw5G009690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 3 cut(s) 163, 166, 190
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 160
AfiI CCNNNNNNNGG 3 cut(s) 196, 215, 248
AgsI TTSAA 1 cut(s) 247
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 1 cut(s) 66
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 9, 99
AlwI GGATC 1 cut(s) 259
AoxI GGCC 4 cut(s) 87, 121, 160, 198
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 210
BceAI ACGGC 2 cut(s) 136, 175
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 9, 99
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 163, 166
BlsI GCNGC 2 cut(s) 164, 167
Bme1390I CCNGG 1 cut(s) 216
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 55, 85, 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 215, 248
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 196, 215, 248
BseMII CTCAG 2 cut(s) 116, 224
BseRI GAGGAG 2 cut(s) 13, 63
BseX3I CGGCCG 1 cut(s) 160
BseYI CCCAGC 2 cut(s) 171, 201
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 4 cut(s) 89, 123, 162, 200
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 52, 172
BslI CCNNNNNNNGG 3 cut(s) 196, 215, 248
BsmAI GTCTC 2 cut(s) 9, 99
BsmFI GGGAC 2 cut(s) 52, 172
BsnI GGCC 4 cut(s) 89, 123, 162, 200
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 3 cut(s) 163, 166, 190
BspANI GGCC 4 cut(s) 89, 123, 162, 200
BspCNI CTCAG 2 cut(s) 115, 223
BspFNI CGCG 1 cut(s) 168
BspPI GGATC 1 cut(s) 259
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 279, 301
Bst6I CTCTTC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 102, 210
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 9, 99
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 275
BstUI CGCG 1 cut(s) 168
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 4 cut(s) 89, 123, 162, 200
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 41
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 199
CviJI RGCY 9 cut(s) 89, 106, 123, 162, 175, 200, 205, 214, 274
CviKI_1 RGCY 9 cut(s) 89, 106, 123, 162, 175, 200, 205, 214, 274
DdeI CTNAG 2 cut(s) 102, 210
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 160
FaiI YATR 1 cut(s) 294
FaqI GGGAC 2 cut(s) 52, 172
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 163, 166
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 163, 166
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 163, 166
GsaI CCCAGC 2 cut(s) 175, 205
HaeIII GGCC 4 cut(s) 89, 123, 162, 200
HapII CCGG 1 cut(s) 216
HhaI GCGC 1 cut(s) 170
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HpaII CCGG 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 78, 145
Hpy99I CGWCG 3 cut(s) 155, 158, 161
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 279, 301
HpyCH4IV ACGT 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 2 cut(s) 102, 210
HpySE526I ACGT 1 cut(s) 65
HspAI GCGC 1 cut(s) 168
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 185, 215, 229
MaeII ACGT 1 cut(s) 65
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 4 cut(s) 39, 42, 45, 48
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 7 cut(s) 34, 55, 81, 84, 134, 219, 268
MroXI GAANNNNTTC 1 cut(s) 227
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 216
NdeII GATC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 164, 167
PspFI CCCAGC 2 cut(s) 171, 201
PspPI GGNCC 1 cut(s) 199
SatI GCNGC 2 cut(s) 163, 166
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 216
SetI ASST 3 cut(s) 68, 253, 276
SfcI CTRYAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 163, 166, 190
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 279, 301
TaiI ACGT 1 cut(s) 68
TasI AATT 1 cut(s) 181
TauI GCSGC 2 cut(s) 165, 168
TspDTI ATGAA 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.