Rorug05G0016700

Belongs to the cullin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011177
Physical Location & Seq
Forward (+)
1123654 .. 1124801
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0016700.1

Sequence Viewer

Length: 357 bp
ATGTCACGTACAGAACCTGAGGAGCTAGAAGTGGCGACAACTAGTCTTGGGTTTATTGTCAAGGATGGCATAGTTCTAGTCGTTGCTTCTAGAATAACTCGAGTCGATGGAAACTTTATAATTTCCGAAAACGCAAGAAACTATTATGAATTATCTTCAGTACACGGCATACTATGCACATTCACAGGGTTAGCTGACGACTGGTATGAGATGTTCAAAACTGTTAAAAAACAGTATGAACTTTACCGTGTTTCTATAGATAATGATGACACTCCGCCTTCAAACGAAAAAGTTGAGTTTTTCGCAACCCTAGGATCTGGGGGTGAACTAGCGAAGAGGATCTTGAACAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000209 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009648 GO:0009719 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010099 GO:0010100 GO:0010154 GO:0010182 GO:0010228 GO:0016567 GO:0019538 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048572 GO:0048573 GO:0048575 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0061458 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071495 GO:0071704 GO:0080008 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026 GO:2000030
KEGG Pathways
Metabolic & Signaling
ko03420 ko04120 map03420 map04120
Pfam Domains
Protein Families
Cullin Cullin_Nedd8

Protein Analysis

118

Amino Acids

13.3

Weight (kDa)

5.01

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 12 - 92 3.8e-08 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46210
fragaria_vesca FvH4_3g05480 FvH4_3g05480 FvH4_3g05480
malus_domestica MD05G1283200.v1.1 MD10G1261500.v1.1
prunus_persica Prupe.4G081400_v2.0.a1
pyrus_communis pycom05g26250 pycom10g21770
rosa_chinensis RchiOBHm_Chr5g0014271
rosa_laevigata RLG00000032095
rosa_multiflora Rmu_co8222354.1_g000001 Rmu_sc0009295.1_g000011
rosa_roxburghii Rroxscaffold_1G00062300
rosa_rugosa Rorug05G0016700
rosa_samantha Rh5AG111100 Rh5BG108300 Rh5CG119900 Rh5DG106900
rosa_wichuraiana Rw5G009690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 119
AciI CCGC 1 cut(s) 275
AclWI GGATC 2 cut(s) 322, 347
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 10, 162
AgsI TTSAA 3 cut(s) 217, 282, 346
AhdI GACNNNNNGTC 1 cut(s) 42
AhlI ACTAGT 1 cut(s) 41
AluBI AGCT 2 cut(s) 25, 194
AluI AGCT 2 cut(s) 25, 194
AlwI GGATC 2 cut(s) 322, 347
AlwNI CAGNNNCTG 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 99
AspA2I CCTAGG 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 99
AvrII CCTAGG 1 cut(s) 310
AxyI CCTNAGG 1 cut(s) 18
BccI CCATC 2 cut(s) 59, 101
BceAI ACGGC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 6 cut(s) 26, 42, 77, 90, 311, 329
BfmI CTRYAG 1 cut(s) 255
BlnI CCTAGG 1 cut(s) 310
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 99
Bsp143I GATC 2 cut(s) 314, 339
BspACI CCGC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 322, 347
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 314, 339
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 3 cut(s) 223, 234, 248
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 317, 342
BstMBI GATC 2 cut(s) 314, 339
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 314, 339
BstYI RGATCY 2 cut(s) 314, 339
Bsu36I CCTNAGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 17
Csp6I GTAC 2 cut(s) 9, 161
CviJI RGCY 2 cut(s) 25, 194
CviKI_1 RGCY 2 cut(s) 25, 194
CviQI GTAC 2 cut(s) 9, 161
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 316, 341
DpnII GATC 2 cut(s) 314, 339
DriI GACNNNNNGTC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 329
Eam1105I GACNNNNNGTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaiI YATR 8 cut(s) 71, 119, 147, 170, 175, 207, 237, 257
FalI AAGNNNNNCTT 1 cut(s) 326
FokI GGATG 1 cut(s) 77
FspBI CTAG 6 cut(s) 26, 42, 77, 90, 311, 329
HinfI GANTC 1 cut(s) 102
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 163, 326
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 90, 343
Hpy8I GTNNAC 2 cut(s) 163, 326
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 3 cut(s) 223, 234, 248
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 7
Kzo9I GATC 2 cut(s) 314, 339
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 30, 171, 187, 303
MaeI CTAG 6 cut(s) 26, 42, 77, 90, 311, 329
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 316, 341
MboI GATC 2 cut(s) 314, 339
MboII GAAGA 2 cut(s) 147, 346
MflI RGATCY 2 cut(s) 314, 339
MluCI AATT 2 cut(s) 120, 149
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 2 cut(s) 13, 330
MseI TTAA 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 2 cut(s) 314, 339
NmuCI GTSAC 1 cut(s) 3
PaeR7I CTCGAG 1 cut(s) 99
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 8
PsiI TTATAA 1 cut(s) 119
PspXI VCTCGAGB 1 cut(s) 99
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 2 cut(s) 314, 339
RsaI GTAC 2 cut(s) 10, 162
RsaNI GTAC 2 cut(s) 9, 161
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 2 cut(s) 314, 339
SchI GAGTC 1 cut(s) 111
SetI ASST 4 cut(s) 10, 19, 27, 196
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 41
Sse9I AATT 2 cut(s) 120, 149
SsiI CCGC 1 cut(s) 275
SspMI CTAG 6 cut(s) 26, 42, 77, 90, 311, 329
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 223, 234, 248
TaiI ACGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 100, 105
TasI AATT 2 cut(s) 120, 149
TatI WGTACW 1 cut(s) 160
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 162, 252
XbaI TCTAGA 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 99
XmaJI CCTAGG 1 cut(s) 310
XspI CTAG 6 cut(s) 26, 42, 77, 90, 311, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.