Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285235.1

Orthogroup ID

OG0015986

Physical Location & Seq

Genomic Coordinates Forward (+)

114 .. 858

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

atgaagctcttcttcttcaagcgccattgcagctctctcatctcctccaatctccacaaaacccaaaacccaccacccaaacaatcccaaatcctccacctctgcaaatccggcttacttttcgacgcgattcgaatcctcaactccataaacccctctgaaatcaccctcaaaccactcgtctacgcttcactcttgcagacatgcaccaaagccgtttctctcacccacggcctccaaatccacgcccacgtcatcaagtccggcctcgaaaccgaccggttcgtcgggaacagcttgctctctctgtacttcaagctgatccccgacatgtccgaaacccggagagtgtttgatgctctgtatttcagggatgtgatatcgtggacgtcgatgatcaccgggtacgttcgcgccggaaagcctgctacctcagttgcattgttttgggagatggtcagtttcgggatcgagccgaatgacttcactgtatccgcggtggtcaaggcttgttcgcaggtcgggtactacaggctcggccggtgcttgcatggagtggttgtgagtcgtgggtttgattcgaatccggtcattgttactgctttgattgacatgtatgggagaaatcataggccgggggatgcacgccagctatttgatgaaatgattgaaccgggcgcgatctgttggacgtcggtgatttcagcgctgacgcggaacgatatgtttagggaagcattggggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

248

Amino Acids

27.75

Weight (kDa)

9.18

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03540
fragaria_vesca	FvH4_6g44920
malus_domestica	MD09G1091800.v1.1
prunus_persica	Prupe.3G233200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162111
rosa_laevigata	RLG00000021323
rosa_multiflora	Rmu_co8285235.1_g000001 Rmu_sc0004020.1_g000032 Rmu_sc0004020.1_g000033
rosa_roxburghii	Rroxscaffold_2G00088290
rosa_rugosa	Rorug02G0494700
rosa_samantha	Rh2AG561200 Rh2BG574300 Rh2CG544600
rosa_wichuraiana	Rw2G046470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	2 cut(s)	392, 695
Acc36I	ACCTGC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	5 cut(s)	128, 414, 497, 680, 715
AciI	CCGC	3 cut(s)	495, 497, 715
AclWI	GGATC	2 cut(s)	316, 476
AcoI	YGGCCR	1 cut(s)	538
AcyI	GRCGYC	2 cut(s)	389, 692
AfaI	GTAC	3 cut(s)	311, 407, 527
AfeI	AGCGCT	1 cut(s)	708
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	2 cut(s)	330, 612
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	19, 316, 671
AjiI	CACGTC	1 cut(s)	253
AluBI	AGCT	5 cut(s)	7, 33, 297, 319, 652
AluI	AGCT	5 cut(s)	7, 33, 297, 319, 652
AlwI	GGATC	2 cut(s)	316, 476
Aor51HI	AGCGCT	1 cut(s)	708
AoxI	GGCC	4 cut(s)	232, 265, 538, 632
ApeKI	GCWGC	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	2 cut(s)	8, 482
AspLEI	GCGC	4 cut(s)	24, 416, 680, 709
AsuC2I	CCSGG	4 cut(s)	343, 403, 636, 675
AsuHPI	GGTGA	4 cut(s)	157, 217, 391, 709
AsuII	TTCGAA	2 cut(s)	133, 581
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	2 cut(s)	200, 247
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	1 cut(s)	396
BcnI	CCSGG	4 cut(s)	343, 403, 636, 675
BfmI	CTRYAG	1 cut(s)	529
BfoI	RGCGCY	2 cut(s)	25, 710
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	4 cut(s)	343, 403, 636, 675
BmgBI	CACGTC	1 cut(s)	253
BmrFI	CCNGG	4 cut(s)	343, 403, 636, 675
BmsI	GCATC	2 cut(s)	346, 631
Bpu14I	TTCGAA	2 cut(s)	133, 581
BpuMI	CCSGG	4 cut(s)	343, 403, 636, 675
BsaBI	GATNNNNATC	2 cut(s)	134, 582
BsaHI	GRCGYC	2 cut(s)	389, 692
BsaJI	CCNNGG	3 cut(s)	229, 495, 635
BsaWI	WCCGGW	2 cut(s)	279, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	2 cut(s)	279, 540
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	2 cut(s)	134, 582
BseDI	CCNNGG	3 cut(s)	229, 495, 635
BseGI	GGATG	2 cut(s)	379, 646
BseJI	GATNNNNATC	2 cut(s)	134, 582
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	5 cut(s)	128, 414, 497, 680, 715
Bsh1285I	CGRYCG	2 cut(s)	280, 541
BshFI	GGCC	4 cut(s)	234, 267, 540, 634
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	2 cut(s)	280, 541
BslI	CCNNNNNNNGG	1 cut(s)	342
BsnI	GGCC	4 cut(s)	234, 267, 540, 634
Bsp119I	TTCGAA	2 cut(s)	133, 581
Bsp143I	GATC	4 cut(s)	321, 396, 468, 681
BspACI	CCGC	3 cut(s)	495, 497, 715
BspANI	GGCC	4 cut(s)	234, 267, 540, 634
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	5 cut(s)	128, 414, 497, 680, 715
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	2 cut(s)	316, 476
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	2 cut(s)	133, 581
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	279, 540
BssAI	RCCGGY	2 cut(s)	279, 540
BssECI	CCNNGG	3 cut(s)	229, 495, 635
BssMI	GATC	4 cut(s)	321, 396, 468, 681
BssNI	GRCGYC	2 cut(s)	389, 692
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	2 cut(s)	389, 692
BstBI	TTCGAA	2 cut(s)	133, 581
BstC8I	GCNNGC	5 cut(s)	299, 426, 548, 646, 650
BstDEI	CTNAG	1 cut(s)	433
BstDSI	CCRYGG	2 cut(s)	229, 495
BstF5I	GGATG	2 cut(s)	379, 646
BstFNI	CGCG	5 cut(s)	128, 414, 497, 680, 715
BstH2I	RGCGCY	2 cut(s)	25, 710
BstHHI	GCGC	4 cut(s)	24, 416, 680, 709
BstKTI	GATC	4 cut(s)	324, 399, 471, 684
BstMBI	GATC	4 cut(s)	321, 396, 468, 681
BstMCI	CGRYCG	2 cut(s)	280, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 111
BstNSI	RCATGY	3 cut(s)	207, 334, 616
BstSCI	CCNGG	4 cut(s)	341, 401, 634, 673
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	5 cut(s)	128, 414, 497, 680, 715
BstV1I	GCAGC	1 cut(s)	42
BstZI	CGGCCG	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	234, 267, 540, 634
BtgI	CCRYGG	2 cut(s)	229, 495
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	379, 646
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	5 cut(s)	299, 426, 548, 646, 650
CfoI	GCGC	4 cut(s)	24, 416, 680, 709
Cfr10I	RCCGGY	2 cut(s)	279, 540
Cfr42I	CCGCGG	1 cut(s)	498
CseI	GACGC	2 cut(s)	134, 721
Csp6I	GTAC	3 cut(s)	310, 406, 526
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	4 cut(s)	204, 331, 551, 613
CviQI	GTAC	3 cut(s)	310, 406, 526
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	4 cut(s)	323, 398, 470, 683
DpnII	GATC	4 cut(s)	321, 396, 468, 681
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	538
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	708
Eco52I	CGGCCG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	381
FaeI	CATG	4 cut(s)	207, 334, 554, 616
FaiI	YATR	8 cut(s)	149, 205, 332, 552, 614, 618, 630, 725
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	4 cut(s)	203, 330, 550, 612
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	2 cut(s)	386, 653
Fsp4HI	GCNGC	1 cut(s)	31
GlaI	GCGC	4 cut(s)	23, 415, 679, 708
GluI	GCNGC	1 cut(s)	31
HaeII	RGCGCY	2 cut(s)	25, 710
HaeIII	GGCC	4 cut(s)	234, 267, 540, 634
HgaI	GACGC	2 cut(s)	134, 721
HhaI	GCGC	4 cut(s)	24, 416, 680, 709
Hin1I	GRCGYC	2 cut(s)	389, 692
Hin1II	CATG	4 cut(s)	207, 334, 554, 616
Hin6I	GCGC	4 cut(s)	22, 414, 678, 707
HinP1I	GCGC	4 cut(s)	22, 414, 678, 707
HinfI	GANTC	5 cut(s)	130, 135, 565, 578, 583
HphI	GGTGA	4 cut(s)	157, 217, 391, 709
Hpy166II	GTNNAC	2 cut(s)	184, 387
Hpy188I	TCNGA	2 cut(s)	160, 337
Hpy188III	TCNNGA	2 cut(s)	289, 466
Hpy8I	GTNNAC	2 cut(s)	184, 387
Hpy99I	CGWCG	4 cut(s)	128, 290, 394, 697
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	4 cut(s)	252, 389, 408, 692
HpyCH4V	TGCA	7 cut(s)	30, 105, 199, 207, 440, 550, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 111
HpyF3I	CTNAG	1 cut(s)	433
HpySE526I	ACGT	4 cut(s)	252, 389, 408, 692
Hsp92I	GRCGYC	2 cut(s)	389, 692
Hsp92II	CATG	4 cut(s)	207, 334, 554, 616
HspAI	GCGC	4 cut(s)	22, 414, 678, 707
Ksp22I	TGATCA	1 cut(s)	396
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	321, 396, 468, 681
LguI	GCTCTTC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	2 cut(s)	346, 631
MaeII	ACGT	4 cut(s)	252, 389, 408, 692
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	323, 398, 470, 683
MboI	GATC	4 cut(s)	321, 396, 468, 681
MboII	GAAGA	2 cut(s)	4, 7
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	9 cut(s)	55, 104, 110, 149, 166, 179, 245, 278, 442
MroXI	GAANNNNTTC	2 cut(s)	8, 482
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	4 cut(s)	343, 403, 636, 675
MvnI	CGCG	5 cut(s)	128, 414, 497, 680, 715
MwoI	GCNNNNNNNGC	2 cut(s)	30, 111
NciI	CCSGG	4 cut(s)	343, 403, 636, 675
NdeII	GATC	4 cut(s)	321, 396, 468, 681
NlaIII	CATG	4 cut(s)	207, 334, 554, 616
NmeAIII	GCCGAG	1 cut(s)	516
NspI	RCATGY	3 cut(s)	207, 334, 616
NspV	TTCGAA	2 cut(s)	133, 581
PciI	ACATGT	2 cut(s)	330, 612
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	8, 482
PfeI	GAWTC	4 cut(s)	130, 135, 578, 583
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	573
PscI	ACATGT	2 cut(s)	330, 612
RsaI	GTAC	3 cut(s)	311, 407, 527
RsaNI	GTAC	3 cut(s)	310, 406, 526
SacII	CCGCGG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	4 cut(s)	321, 396, 468, 681
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	4 cut(s)	343, 403, 636, 675
SfaNI	GCATC	2 cut(s)	346, 631
SfcI	CTRYAG	1 cut(s)	529
Sfr303I	CCGCGG	1 cut(s)	498
SfuI	TTCGAA	2 cut(s)	133, 581
SgrBI	CCGCGG	1 cut(s)	498
SsiI	CCGC	3 cut(s)	495, 497, 715
StyD4I	CCNGG	4 cut(s)	341, 401, 634, 673
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	4 cut(s)	255, 392, 411, 695
TaqI	TCGA	6 cut(s)	123, 133, 270, 392, 471, 581
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	4 cut(s)	130, 135, 578, 583
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	17, 675
TspRI	CASTG	1 cut(s)	493
XceI	RCATGY	3 cut(s)	207, 334, 616
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	2 cut(s)	8, 482
ZraI	GACGTC	2 cut(s)	390, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.