Rorug02G0494700

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
62371892 .. 62373644
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0494700.1

Sequence Viewer

Length: 1431 bp
ATGGAAGCTATTAAGCCTCATGCTGTTTTTATTCCGGTTCCAGCTCAAAGCCATATAAAGGCAATGCTTAAACTAGCAAAAATCCTCCATCATAGAGGCTTTCATATCACCTTTGTCAACACAGAGTTCAATCACAAGAGATTTCTTAAATCTCAAGGACCAAACTCCCTAGATGGCTTCCCTGATTTTCGGTTCGAAGCCATTCCAGATGGGCTTCCAGAATCGGATGAAGATGCCACCCAAGATGTTGCTATGCTTTGTGACTCTATCAAAAAAAATTTCTTAGCTCCTTTTTGTGCCCTTATCATGAAACTGAACATTACTAATCCTCCAGTGAGTTGTATAGTTTCAGATGGTTGCATGTCGACATTCACCATCACAGCTGCTGAAGAATTTGGAGTTCCAGTAGCACTGTTCTACACCATTGCTGCTTGCAGCTTCATGGGGTTTACACAATATCCCAGTTTGATTGAAAAAGGACTTGCACCACTTAAAGATGAGAGCTGCTTCACCAATGGGTTTTTAGACAAGGTAATAGACTGGATTCCAGGAATGAAAGAAATTCGTTTAAGGGATCTCCCAACATTCTTTCGAACAACAAATCCCGATGACATCATTTTTAACTACTTCATAGAAGCAACAGGCCCAAGAATTCAGAAAGCTTCAGCTGTTGTTCTCCATACATTTGATGCATTGGAACAAGATGTTTTGGATGCTCTCTCATCTATGCTTCCACATGTTTATGCCATTGGACCTATCCAATTACTTCTCAATCAGATACCGGAACACCCTCTGAATCCTATGGGTTACAGTCTATGGAAAGAAGAACCGGAGTGCCTTGAGTGGCTGGAGAACAGGGCACCAAATTCAGTTGTTTATGTGAATTTTGGTAGCGTAGCAGTCTTGACATCAAAACAGCTCGTAGAGTTTGGTTGGGGACTTGCAAACAGCAAGTATCCTTTCTTCTGGGTAATTAGGCCTGATCTGGTTATTGGCGAGTCAGCAATTTTGCCACCTGAATTTGTAGCTGAGATCAAAGATAGAGGTCTGCTAGCAAGTTGGTGCCCGCAAGAGCAAGTACTCAACCATCCATCCGTTGGAGGGTTTCTAACACACAGTGGCTGGAATTCAACTATTGAGAGTTTGACGGCCGGAGTGCCTATGTTGTGTTGGCCATTCTTTGGTGACCAGCAGACAGACTGTTACTTTAGTTGCAAGGAATTGGGTGTTGGCATGGAAATCAGTAACGATGTCAAGAGAGAAGAAGTAGAGAAGCTTGTTAAAGAGTTAATGGAGGGAGAGAAGGGCAAGAAAATGAGAAACAAGGCCTTGAATTGGAAGAAACTTGCGCAAGAAGCCACTGCTCCACATGGTTGTTCATCGATAAACTTGGACAATTTAGTGAATCAAGTGCTACTAAGGAAAAGCTAG

Protein Analysis

476

Amino Acids

53.25

Weight (kDa)

5.39

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 235 - 437 1.9e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03540
fragaria_vesca FvH4_6g44920
malus_domestica MD09G1091800.v1.1
prunus_persica Prupe.3G233200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0162111
rosa_laevigata RLG00000021323
rosa_multiflora Rmu_co8285235.1_g000001 Rmu_sc0004020.1_g000032 Rmu_sc0004020.1_g000033
rosa_roxburghii Rroxscaffold_2G00088290
rosa_rugosa Rorug02G0494700
rosa_samantha Rh2AG561200 Rh2BG574300 Rh2CG544600
rosa_wichuraiana Rw2G046470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1350
AccB1I GGYRCC 2 cut(s) 859, 1062
AccB7I CCANNNNNTGG 2 cut(s) 1097, 1181
AccI GTMKAC 1 cut(s) 365
AciI CCGC 1 cut(s) 1067
AclWI GGATC 1 cut(s) 582
AcoI YGGCCR 2 cut(s) 1149, 1172
AcsI RAATTY 8 cut(s) 277, 392, 561, 651, 865, 883, 1019, 1126
AcuI CTGAAG 2 cut(s) 408, 648
AdeI CACNNNGTG 1 cut(s) 1118
AfaI GTAC 1 cut(s) 1080
AfiI CCNNNNNNNGG 5 cut(s) 58, 1097, 1101, 1181, 1335
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 4 cut(s) 130, 473, 1131, 1333
AjnI CCWGG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 1212, 1244
AloI GAACNNNNNNTCC 2 cut(s) 586, 618
AlwI GGATC 1 cut(s) 582
AlwNI CAGNNNCTG 2 cut(s) 386, 1122
AoxI GGCC 5 cut(s) 643, 977, 1149, 1172, 1326
ApeKI GCWGC 4 cut(s) 383, 428, 435, 504
ApoI RAATTY 8 cut(s) 277, 392, 561, 651, 865, 883, 1019, 1126
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 1351
AspS9I GGNCC 3 cut(s) 158, 644, 752
AsuHPI GGTGA 4 cut(s) 100, 364, 502, 1196
AsuII TTCGAA 2 cut(s) 195, 592
AsuNHI GCTAGC 1 cut(s) 1051
AvaII GGWCC 2 cut(s) 158, 752
BaeGI GKGCMC 3 cut(s) 301, 862, 1067
BalI TGGCCA 1 cut(s) 1174
BanI GGYRCC 2 cut(s) 859, 1062
BarI GAAGNNNNNNTAC 2 cut(s) 947, 979
BbvI GCAGC 4 cut(s) 370, 415, 447, 491
BccI CCATC 7 cut(s) 96, 167, 203, 347, 383, 1095, 1099
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 1 cut(s) 549
BciVI GTATCC 1 cut(s) 966
BfaI CTAG 4 cut(s) 74, 170, 1052, 1429
BfuI GTATCC 1 cut(s) 966
BisI GCNGC 4 cut(s) 384, 429, 436, 505
BlsI GCNGC 4 cut(s) 385, 430, 437, 506
BmcAI AGTACT 1 cut(s) 1080
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 2 cut(s) 158, 752
BmgT120I GGNCC 3 cut(s) 158, 644, 752
BmiI GGNNCC 3 cut(s) 39, 861, 1064
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 3 cut(s) 223, 679, 703
BmtI GCTAGC 1 cut(s) 1055
BmuI ACTGGG 1 cut(s) 456
BpmI CTGGAG 2 cut(s) 315, 869
Bpu14I TTCGAA 2 cut(s) 195, 592
BpuEI CTTGAG 2 cut(s) 138, 860
Bsa29I ATCGAT 1 cut(s) 1382
BsaWI WCCGGW 3 cut(s) 34, 781, 829
BsaXI ACNNNNNCTCC 4 cut(s) 313, 343, 390, 420
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 1097, 1101, 1181, 1335
Bse1I ACTGG 4 cut(s) 332, 404, 462, 545
Bse3DI GCAATG 2 cut(s) 69, 423
BseBI CCWGG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 1382
BseGI GGATG 4 cut(s) 232, 718, 1087, 1091
BseLI CCNNNNNNNGG 5 cut(s) 58, 1097, 1101, 1181, 1335
BseMI GCAATG 2 cut(s) 69, 423
BseMII CTCAG 1 cut(s) 1020
BseNI ACTGG 4 cut(s) 332, 404, 462, 545
BseSI GKGCMC 3 cut(s) 301, 862, 1067
BseX3I CGGCCG 1 cut(s) 1149
BseXI GCAGC 4 cut(s) 370, 415, 447, 491
Bsh1285I CGRYCG 1 cut(s) 1152
BshFI GGCC 5 cut(s) 645, 979, 1151, 1174, 1328
BshNI GGYRCC 2 cut(s) 859, 1062
BshVI ATCGAT 1 cut(s) 1382
BsiEI CGRYCG 1 cut(s) 1152
BsiSI CCGG 4 cut(s) 35, 782, 830, 1152
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 5 cut(s) 58, 1097, 1101, 1181, 1335
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 5 cut(s) 645, 979, 1151, 1174, 1328
Bsp119I TTCGAA 2 cut(s) 195, 592
Bsp1286I GDGCHC 3 cut(s) 301, 862, 1067
Bsp143I GATC 3 cut(s) 574, 982, 1032
BspACI CCGC 1 cut(s) 1067
BspANI GGCC 5 cut(s) 645, 979, 1151, 1174, 1328
BspCNI CTCAG 1 cut(s) 1021
BspDI ATCGAT 1 cut(s) 1382
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 39, 861, 1064
BspOI GCTAGC 1 cut(s) 1055
BspPI GGATC 1 cut(s) 582
BspT104I TTCGAA 2 cut(s) 195, 592
BspT107I GGYRCC 2 cut(s) 859, 1062
BsrDI GCAATG 2 cut(s) 69, 423
BsrI ACTGG 4 cut(s) 332, 404, 462, 545
BssMI GATC 3 cut(s) 574, 982, 1032
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 4 cut(s) 414, 812, 1118, 1202
BstBI TTCGAA 2 cut(s) 195, 592
BstC8I GCNNGC 3 cut(s) 433, 1053, 1067
BstDEI CTNAG 3 cut(s) 283, 1029, 1418
BstEII GGTNACC 1 cut(s) 1184
BstF5I GGATG 4 cut(s) 232, 718, 1087, 1091
BstHHI GCGC 1 cut(s) 1351
BstKTI GATC 3 cut(s) 577, 985, 1035
BstMBI GATC 3 cut(s) 574, 982, 1032
BstMCI CGRYCG 1 cut(s) 1152
BstMWI GCNNNNNNNGC 1 cut(s) 1355
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 2 cut(s) 364, 740
BstPI GGTNACC 1 cut(s) 1184
BstSCI CCNGG 1 cut(s) 547
BstSLI GKGCMC 3 cut(s) 301, 862, 1067
BstV1I GCAGC 4 cut(s) 370, 415, 447, 491
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BstZI CGGCCG 1 cut(s) 1149
Bsu15I ATCGAT 1 cut(s) 1382
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 645, 979, 1151, 1174, 1328
BsuTUI ATCGAT 1 cut(s) 1382
BtsCI GGATG 4 cut(s) 232, 718, 1087, 1091
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 4 cut(s) 339, 410, 1123, 1359
Cac8I GCNNGC 3 cut(s) 433, 1053, 1067
CaiI CAGNNNCTG 2 cut(s) 386, 1122
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 1351
Cfr13I GGNCC 3 cut(s) 158, 644, 752
ClaI ATCGAT 1 cut(s) 1382
Csp6I GTAC 1 cut(s) 1079
CviAII CATG 7 cut(s) 20, 307, 361, 442, 737, 1234, 1370
CviQI GTAC 1 cut(s) 1079
DdeI CTNAG 3 cut(s) 283, 1029, 1418
DpnI GATC 3 cut(s) 576, 984, 1034
DpnII GATC 3 cut(s) 574, 982, 1032
DraIII CACNNNGTG 1 cut(s) 1118
EaeI YGGCCR 2 cut(s) 1149, 1172
EagI CGGCCG 1 cut(s) 1149
EclXI CGGCCG 1 cut(s) 1149
Eco147I AGGCCT 2 cut(s) 979, 1328
Eco47I GGWCC 2 cut(s) 158, 752
Eco52I CGGCCG 1 cut(s) 1149
Eco57I CTGAAG 2 cut(s) 408, 648
Eco91I GGTNACC 1 cut(s) 1184
EcoO65I GGTNACC 1 cut(s) 1184
EcoRI GAATTC 2 cut(s) 651, 1126
EcoRII CCWGG 1 cut(s) 547
EcoT22I ATGCAT 1 cut(s) 694
FaeI CATG 7 cut(s) 23, 310, 364, 445, 740, 1237, 1373
FaqI GGGAC 1 cut(s) 951
FatI CATG 7 cut(s) 19, 306, 360, 441, 736, 1233, 1369
FauI CCCGC 1 cut(s) 1074
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 4 cut(s) 384, 429, 436, 505
FokI GGATG 4 cut(s) 239, 725, 1074, 1078
Fsp4HI GCNGC 4 cut(s) 384, 429, 436, 505
FspBI CTAG 4 cut(s) 74, 170, 1052, 1429
FspI TGCGCA 1 cut(s) 1350
GlaI GCGC 1 cut(s) 1350
GluI GCNGC 4 cut(s) 384, 429, 436, 505
GsuI CTGGAG 2 cut(s) 315, 869
HaeIII GGCC 5 cut(s) 645, 979, 1151, 1174, 1328
HapII CCGG 4 cut(s) 35, 782, 830, 1152
HhaI GCGC 1 cut(s) 1351
Hin1II CATG 7 cut(s) 23, 310, 364, 445, 740, 1237, 1373
Hin6I GCGC 1 cut(s) 1349
HinP1I GCGC 1 cut(s) 1349
HincII GTYRAC 2 cut(s) 118, 366
HindII GTYRAC 2 cut(s) 118, 366
HindIII AAGCTT 2 cut(s) 660, 1274
HinfI GANTC 6 cut(s) 221, 263, 544, 796, 998, 1405
HpaII CCGG 4 cut(s) 35, 782, 830, 1152
HphI GGTGA 4 cut(s) 100, 364, 502, 1196
Hpy166II GTNNAC 3 cut(s) 118, 366, 450
Hpy188I TCNGA 5 cut(s) 226, 352, 657, 777, 795
Hpy188III TCNNGA 6 cut(s) 206, 218, 307, 605, 904, 1255
Hpy8I GTNNAC 3 cut(s) 118, 366, 450
HpyAV CCTTC 1 cut(s) 1297
HpyCH4III ACNGT 4 cut(s) 414, 812, 1118, 1202
HpyCH4V TGCA 6 cut(s) 360, 435, 485, 692, 944, 1215
HpyF10VI GCNNNNNNNGC 1 cut(s) 1355
HpyF3I CTNAG 3 cut(s) 283, 1029, 1418
Hsp92II CATG 7 cut(s) 23, 310, 364, 445, 740, 1237, 1373
HspAI GCGC 1 cut(s) 1349
Kzo9I GATC 3 cut(s) 574, 982, 1032
LmnI GCTCC 2 cut(s) 292, 1369
Lsp1109I GCAGC 4 cut(s) 370, 415, 447, 491
LweI GCATC 3 cut(s) 223, 679, 703
MaeI CTAG 4 cut(s) 74, 170, 1052, 1429
MaeIII GTNAC 5 cut(s) 260, 806, 1184, 1202, 1244
MalI GATC 3 cut(s) 576, 984, 1034
MboI GATC 3 cut(s) 574, 982, 1032
MboII GAAGA 6 cut(s) 242, 401, 836, 955, 1274, 1351
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 3 cut(s) 301, 862, 1067
MlsI TGGCCA 1 cut(s) 1174
MluNI TGGCCA 1 cut(s) 1174
MlyI GAGTC 2 cut(s) 257, 1007
MmeI TCCRAC 1 cut(s) 1078
MnlI CCTC 8 cut(s) 27, 89, 95, 339, 801, 1037, 1094, 1288
Mox20I TGGCCA 1 cut(s) 1174
Mph1103I ATGCAT 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 201
MscI TGGCCA 1 cut(s) 1174
MseI TTAA 8 cut(s) 12, 69, 147, 492, 569, 621, 1281, 1289
MslI CAYNNNNRTG 1 cut(s) 741
Msp20I TGGCCA 1 cut(s) 1174
MspA1I CMGCKG 2 cut(s) 383, 668
MspI CCGG 4 cut(s) 35, 782, 830, 1152
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 1 cut(s) 1355
NdeII GATC 3 cut(s) 574, 982, 1032
NheI GCTAGC 1 cut(s) 1051
NlaIII CATG 7 cut(s) 23, 310, 364, 445, 740, 1237, 1373
NlaIV GGNNCC 3 cut(s) 39, 861, 1064
NmuCI GTSAC 2 cut(s) 260, 1184
NsbI TGCGCA 1 cut(s) 1350
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 2 cut(s) 364, 740
NspV TTCGAA 2 cut(s) 195, 592
PagI TCATGA 1 cut(s) 306
PceI AGGCCT 2 cut(s) 979, 1328
PciI ACATGT 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 4 cut(s) 221, 544, 796, 1405
PflMI CCANNNNNTGG 2 cut(s) 1097, 1181
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 4 cut(s) 385, 430, 437, 506
PleI GAGTC 2 cut(s) 257, 1006
PpsI GAGTC 2 cut(s) 257, 1006
PscI ACATGT 1 cut(s) 736
Psp6I CCWGG 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 1184
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 39, 861, 1064
PspPI GGNCC 3 cut(s) 158, 644, 752
PstNI CAGNNNCTG 2 cut(s) 386, 1122
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 2 cut(s) 383, 668
RsaI GTAC 1 cut(s) 1080
RsaNI GTAC 1 cut(s) 1079
RseI CAYNNNNRTG 1 cut(s) 741
SalI GTCGAC 1 cut(s) 364
SaqAI TTAA 8 cut(s) 12, 69, 147, 492, 569, 621, 1281, 1289
SatI GCNGC 4 cut(s) 384, 429, 436, 505
Sau3AI GATC 3 cut(s) 574, 982, 1032
Sau96I GGNCC 3 cut(s) 158, 644, 752
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 2 cut(s) 257, 1007
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 3 cut(s) 301, 862, 1067
SfaNI GCATC 3 cut(s) 223, 679, 703
SfuI TTCGAA 2 cut(s) 195, 592
SinI GGWCC 2 cut(s) 158, 752
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 153, 839
SmoI CTYRAG 2 cut(s) 153, 839
SseBI AGGCCT 2 cut(s) 979, 1328
SsiI CCGC 1 cut(s) 1067
SspMI CTAG 4 cut(s) 74, 170, 1052, 1429
StuI AGGCCT 2 cut(s) 979, 1328
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 4 cut(s) 414, 812, 1118, 1202
TaqI TCGA 4 cut(s) 195, 365, 592, 1382
TatI WGTACW 1 cut(s) 1078
TfiI GAWTC 4 cut(s) 221, 544, 796, 1405
Tru1I TTAA 8 cut(s) 12, 69, 147, 492, 569, 621, 1281, 1289
Tru9I TTAA 8 cut(s) 12, 69, 147, 492, 569, 621, 1281, 1289
TscAI CASTG 4 cut(s) 339, 417, 1123, 1366
TseFI GTSAC 2 cut(s) 260, 1184
TseI GCWGC 4 cut(s) 383, 428, 435, 504
Tsp45I GTSAC 2 cut(s) 260, 1184
TspDTI ATGAA 7 cut(s) 92, 243, 323, 430, 569, 619, 1368
TspGWI ACGGA 1 cut(s) 1084
TspRI CASTG 4 cut(s) 339, 417, 1123, 1366
Van91I CCANNNNNTGG 2 cut(s) 1097, 1181
VpaK11BI GGWCC 2 cut(s) 158, 752
XapI RAATTY 8 cut(s) 277, 392, 561, 651, 865, 883, 1019, 1126
XceI RCATGY 2 cut(s) 364, 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 4 cut(s) 74, 170, 1052, 1429
ZrmI AGTACT 1 cut(s) 1080
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.