Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004020.1

Orthogroup ID

OG0015986

Physical Location & Seq

Genomic Coordinates Reverse (-)

158172 .. 159436

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004020.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgaagctcttcttcttcaagcgccattgcagctctctcatctcctccaatctccacaaaacccaaaacccaccacccaaacaatcccaaatcctccacctctgcaaatccggcttacttttcgacgcgattcgaatcctcaactccataaacccctctgaaatcaccctcaaaccactcgtctacgcttcactcttgcagacatgcaccaaagccgtttctctcacccacggcctccaaatccacgcccacgtcatcaagtccggcctcgaaaccgaccggttcgtcgggaacagcttgctctctctgtacttcaagctgatccccgacatgtccgaaacccggagagtgtttgatgctctgtatttcagggatgtgatatcgtggacgtcgatgatcaccgggtacgttcgcgccggaaagcctgctacctcagttgcattgttttgggagatggtcagtttcgggatcgagccgaatgacttcactgtatccgcggtggtcaaggcttgttcgcaggtcgggtactacaggctcggccggtgcttgcatggagtggttgtgagtcgtgggtttgattcgaatccggtcattgttactgctttgattgacatgtatgggagaaatcataggccgggtcatgcaggtttggttgatcaagggcgaaggaactttatcttgatgacaaaagagtatgggatcaaacctgggattgaacattattgttgcatggttgatctcctcggccgtgctgggctactggaagaagcagagaatttaatagagagtgcagagtgtagaaatgattcttccctctgggcagttcttctaggtgctagcacaacctgtacaaactctgctactgcagagcgcatagccaagaaaatgataaaacttgaacctgactaccatttgagttatgttcttctagctaatgtatacagatcattaggccgatgggatgatgccttggagattgccaagctgatgcaagatagaggagttaagaagactccggctaagagctggattgaatctaatagtagattgggttctcatcttcatgttggtgatgtgcacttacctagaaaaatcgattttaatgccgtttggggacattgtatgaaaacgagaatagacggaagtgaatcaaaagttgagtatcaacccatgttggaggctggagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

396

Amino Acids

44.27

Weight (kDa)

8.98

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03540
fragaria_vesca	FvH4_6g44920
malus_domestica	MD09G1091800.v1.1
prunus_persica	Prupe.3G233200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162111
rosa_laevigata	RLG00000021323
rosa_multiflora	Rmu_co8285235.1_g000001 Rmu_sc0004020.1_g000032 Rmu_sc0004020.1_g000033
rosa_roxburghii	Rroxscaffold_2G00088290
rosa_rugosa	Rorug02G0494700
rosa_samantha	Rh2AG561200 Rh2BG574300 Rh2CG544600
rosa_wichuraiana	Rw2G046470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	1 cut(s)	392
Acc36I	ACCTGC	2 cut(s)	508, 635
AccI	GTMKAC	2 cut(s)	183, 939
AccII	CGCG	3 cut(s)	128, 414, 497
AciI	CCGC	2 cut(s)	495, 497
AclWI	GGATC	3 cut(s)	316, 476, 707
AcoI	YGGCCR	2 cut(s)	538, 745
AcsI	RAATTY	1 cut(s)	775
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	4 cut(s)	311, 407, 527, 850
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	2 cut(s)	330, 612
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	5 cut(s)	19, 316, 716, 899, 1034
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	7 cut(s)	7, 33, 297, 319, 932, 985, 1026
AluI	AGCT	7 cut(s)	7, 33, 297, 319, 932, 985, 1026
Alw21I	GWGCWC	1 cut(s)	1080
Alw44I	GTGCAC	1 cut(s)	1076
AlwI	GGATC	3 cut(s)	316, 476, 707
AoxI	GGCC	6 cut(s)	232, 265, 538, 632, 745, 952
ApaLI	GTGCAC	1 cut(s)	1076
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	775
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	3 cut(s)	8, 482, 805
AspLEI	GCGC	3 cut(s)	24, 416, 873
AsuC2I	CCSGG	3 cut(s)	343, 403, 636
AsuHPI	GGTGA	4 cut(s)	157, 217, 391, 1082
AsuII	TTCGAA	2 cut(s)	133, 581
AsuNHI	GCTAGC	1 cut(s)	836
BaeGI	GKGCMC	1 cut(s)	1080
BbsI	GAAGAC	1 cut(s)	1016
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	2 cut(s)	448, 951
BceAI	ACGGC	4 cut(s)	200, 247, 732, 1091
BcgI	CGANNNNNNTGC	2 cut(s)	1085, 1119
BciT130I	CCWGG	1 cut(s)	708
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	2 cut(s)	396, 655
BcnI	CCSGG	3 cut(s)	343, 403, 636
BfaI	CTAG	4 cut(s)	830, 837, 929, 1086
BfmI	CTRYAG	2 cut(s)	529, 864
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	2 cut(s)	508, 635
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	4 cut(s)	343, 403, 636, 708
BmgBI	CACGTC	1 cut(s)	253
BmrFI	CCNGG	4 cut(s)	343, 403, 636, 708
BmsI	GCATC	3 cut(s)	346, 955, 978
BmtI	GCTAGC	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	1016
Bpu14I	TTCGAA	2 cut(s)	133, 581
BpuMI	CCSGG	3 cut(s)	343, 403, 636
Bsa29I	ATCGAT	1 cut(s)	1095
BsaBI	GATNNNNATC	2 cut(s)	134, 582
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	5 cut(s)	229, 495, 707, 742, 969
BsaWI	WCCGGW	2 cut(s)	279, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	2 cut(s)	279, 540
Bse1I	ACTGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	2 cut(s)	134, 582
BseBI	CCWGG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	1095
BseDI	CCNNGG	5 cut(s)	229, 495, 707, 742, 969
BseGI	GGATG	2 cut(s)	379, 967
BseJI	GATNNNNATC	2 cut(s)	134, 582
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	765
BseRI	GAGGAG	3 cut(s)	34, 731, 1014
BseSI	GKGCMC	1 cut(s)	1080
BseX3I	CGGCCG	2 cut(s)	538, 745
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	752
BsgI	GTGCAG	1 cut(s)	810
Bsh1236I	CGCG	3 cut(s)	128, 414, 497
Bsh1285I	CGRYCG	3 cut(s)	280, 541, 748
BshFI	GGCC	6 cut(s)	234, 267, 540, 634, 747, 954
BshTI	ACCGGT	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	1095
BsiEI	CGRYCG	3 cut(s)	280, 541, 748
BsiHKAI	GWGCWC	1 cut(s)	1080
BslFI	GGGAC	1 cut(s)	1128
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	1128
BsnI	GGCC	6 cut(s)	234, 267, 540, 634, 747, 954
Bsp119I	TTCGAA	2 cut(s)	133, 581
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp1407I	TGTACA	1 cut(s)	848
Bsp143I	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
BspACI	CCGC	2 cut(s)	495, 497
BspANI	GGCC	6 cut(s)	234, 267, 540, 634, 747, 954
BspCNI	CTCAG	1 cut(s)	446
BspDI	ATCGAT	1 cut(s)	1095
BspFNI	CGCG	3 cut(s)	128, 414, 497
BspMAI	CTGCAG	1 cut(s)	868
BspMI	ACCTGC	2 cut(s)	508, 635
BspOI	GCTAGC	1 cut(s)	840
BspPI	GGATC	3 cut(s)	316, 476, 707
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	2 cut(s)	133, 581
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	279, 540
BsrGI	TGTACA	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	765
BssAI	RCCGGY	2 cut(s)	279, 540
BssECI	CCNNGG	5 cut(s)	229, 495, 707, 742, 969
BssMI	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
BssNAI	GTATAC	1 cut(s)	940
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	969
Bst1107I	GTATAC	1 cut(s)	940
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	848
BstBI	TTCGAA	2 cut(s)	133, 581
BstC8I	GCNNGC	4 cut(s)	299, 426, 548, 838
BstDEI	CTNAG	2 cut(s)	433, 1020
BstDSI	CCRYGG	2 cut(s)	229, 495
BstF5I	GGATG	2 cut(s)	379, 967
BstFNI	CGCG	3 cut(s)	128, 414, 497
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	3 cut(s)	24, 416, 873
BstKTI	GATC	7 cut(s)	324, 399, 471, 658, 702, 739, 947
BstMBI	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
BstMCI	CGRYCG	3 cut(s)	280, 541, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 111
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	3 cut(s)	207, 334, 616
BstSCI	CCNGG	4 cut(s)	341, 401, 634, 706
BstSFI	CTRYAG	2 cut(s)	529, 864
BstSLI	GKGCMC	1 cut(s)	1080
BstUI	CGCG	3 cut(s)	128, 414, 497
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	1016
BstZ17I	GTATAC	1 cut(s)	940
BstZI	CGGCCG	2 cut(s)	538, 745
Bsu15I	ATCGAT	1 cut(s)	1095
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	6 cut(s)	234, 267, 540, 634, 747, 954
BsuTUI	ATCGAT	1 cut(s)	1095
BtgI	CCRYGG	2 cut(s)	229, 495
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	379, 967
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	2 cut(s)	508, 635
Cac8I	GCNNGC	4 cut(s)	299, 426, 548, 838
CfoI	GCGC	3 cut(s)	24, 416, 873
Cfr10I	RCCGGY	2 cut(s)	279, 540
Cfr42I	CCGCGG	1 cut(s)	498
ClaI	ATCGAT	1 cut(s)	1095
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	4 cut(s)	310, 406, 526, 849
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	8 cut(s)	204, 331, 551, 613, 641, 730, 1064, 1171
CviQI	GTAC	4 cut(s)	310, 406, 526, 849
DdeI	CTNAG	2 cut(s)	433, 1020
DpnI	GATC	7 cut(s)	323, 398, 470, 657, 701, 738, 946
DpnII	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	538, 745
EagI	CGGCCG	2 cut(s)	538, 745
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EclXI	CGGCCG	2 cut(s)	538, 745
Eco130I	CCWWGG	1 cut(s)	969
Eco32I	GATATC	1 cut(s)	381
Eco52I	CGGCCG	2 cut(s)	538, 745
EcoRII	CCWGG	1 cut(s)	706
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	969
ErhI	CCWWGG	1 cut(s)	969
FaeI	CATG	8 cut(s)	207, 334, 554, 616, 644, 733, 1067, 1174
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	1128
FatI	CATG	8 cut(s)	203, 330, 550, 612, 640, 729, 1063, 1170
FbaI	TGATCA	2 cut(s)	396, 655
FblI	GTMKAC	2 cut(s)	183, 939
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	2 cut(s)	386, 974
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	4 cut(s)	830, 837, 929, 1086
GlaI	GCGC	3 cut(s)	23, 415, 872
GluI	GCNGC	1 cut(s)	31
GsaI	CCCAGC	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	6 cut(s)	234, 267, 540, 634, 747, 954
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	3 cut(s)	24, 416, 873
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	8 cut(s)	207, 334, 554, 616, 644, 733, 1067, 1174
Hin6I	GCGC	3 cut(s)	22, 414, 871
HinP1I	GCGC	3 cut(s)	22, 414, 871
HinfI	GANTC	9 cut(s)	130, 135, 565, 578, 583, 806, 1012, 1034, 1148
HphI	GGTGA	4 cut(s)	157, 217, 391, 1082
Hpy166II	GTNNAC	4 cut(s)	184, 387, 940, 1078
Hpy188I	TCNGA	2 cut(s)	160, 337
Hpy188III	TCNNGA	3 cut(s)	289, 466, 679
Hpy8I	GTNNAC	4 cut(s)	184, 387, 940, 1078
Hpy99I	CGWCG	3 cut(s)	128, 290, 394
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	3 cut(s)	252, 389, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 111
HpyF3I	CTNAG	2 cut(s)	433, 1020
HpySE526I	ACGT	3 cut(s)	252, 389, 408
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	8 cut(s)	207, 334, 554, 616, 644, 733, 1067, 1174
HspAI	GCGC	3 cut(s)	22, 414, 871
Ksp22I	TGATCA	2 cut(s)	396, 655
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
LguI	GCTCTTC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	3 cut(s)	346, 955, 978
MaeI	CTAG	4 cut(s)	830, 837, 929, 1086
MaeII	ACGT	3 cut(s)	252, 389, 408
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	7 cut(s)	323, 398, 470, 657, 701, 738, 946
MboI	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
MboII	GAAGA	8 cut(s)	4, 7, 776, 801, 818, 917, 1021, 1052
MhlI	GDGCHC	1 cut(s)	1080
MluCI	AATT	1 cut(s)	775
MlyI	GAGTC	2 cut(s)	574, 1006
MmeI	TCCRAC	1 cut(s)	1155
MroXI	GAANNNNTTC	3 cut(s)	8, 482, 805
MseI	TTAA	3 cut(s)	779, 1005, 1101
MslI	CAYNNNNRTG	2 cut(s)	1062, 1068
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	4 cut(s)	343, 403, 636, 708
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	3 cut(s)	128, 414, 497
MwoI	GCNNNNNNNGC	2 cut(s)	30, 111
NciI	CCSGG	3 cut(s)	343, 403, 636
NdeII	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
NheI	GCTAGC	1 cut(s)	836
NlaIII	CATG	8 cut(s)	207, 334, 554, 616, 644, 733, 1067, 1174
NmeAIII	GCCGAG	2 cut(s)	516, 723
NspI	RCATGY	3 cut(s)	207, 334, 616
NspV	TTCGAA	2 cut(s)	133, 581
PciI	ACATGT	2 cut(s)	330, 612
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PdmI	GAANNNNTTC	3 cut(s)	8, 482, 805
PfeI	GAWTC	7 cut(s)	130, 135, 578, 583, 806, 1034, 1148
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	2 cut(s)	573, 1006
PpsI	GAGTC	2 cut(s)	573, 1006
PscI	ACATGT	2 cut(s)	330, 612
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	706
PsrI	GAACNNNNNNTAC	2 cut(s)	1036, 1068
PstI	CTGCAG	1 cut(s)	868
RsaI	GTAC	4 cut(s)	311, 407, 527, 850
RsaNI	GTAC	4 cut(s)	310, 406, 526, 849
RseI	CAYNNNNRTG	2 cut(s)	1062, 1068
SacII	CCGCGG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	779, 1005, 1101
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	7 cut(s)	321, 396, 468, 655, 699, 736, 944
SchI	GAGTC	2 cut(s)	574, 1006
ScrFI	CCNGG	4 cut(s)	343, 403, 636, 708
SduI	GDGCHC	1 cut(s)	1080
SfaNI	GCATC	3 cut(s)	346, 955, 978
SfcI	CTRYAG	2 cut(s)	529, 864
Sfr303I	CCGCGG	1 cut(s)	498
SfuI	TTCGAA	2 cut(s)	133, 581
SgrBI	CCGCGG	1 cut(s)	498
SmiMI	CAYNNNNRTG	2 cut(s)	1062, 1068
Sse9I	AATT	1 cut(s)	775
SsiI	CCGC	2 cut(s)	495, 497
SspMI	CTAG	4 cut(s)	830, 837, 929, 1086
StyD4I	CCNGG	4 cut(s)	341, 401, 634, 706
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	3 cut(s)	255, 392, 411
TaqI	TCGA	7 cut(s)	123, 133, 270, 392, 471, 581, 1095
TasI	AATT	1 cut(s)	775
TatI	WGTACW	2 cut(s)	309, 848
TfiI	GAWTC	7 cut(s)	130, 135, 578, 583, 806, 1034, 1148
Tru1I	TTAA	3 cut(s)	779, 1005, 1101
Tru9I	TTAA	3 cut(s)	779, 1005, 1101
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	3 cut(s)	17, 1052, 1139
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	1076
XapI	RAATTY	1 cut(s)	775
XceI	RCATGY	3 cut(s)	207, 334, 616
XmiI	GTMKAC	2 cut(s)	183, 939
XmnI	GAANNNNTTC	3 cut(s)	8, 482, 805
XspI	CTAG	4 cut(s)	830, 837, 929, 1086
ZraI	GACGTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.