Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015986

Physical Location & Seq

Genomic Coordinates Reverse (-)

10264049 .. 10266316

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGAAGCTCTTCTTCTTCAAGCGCCATTGCAGCTCTCTCATATCCTCCAATCTCCACAAAACCCAAAACCCACAACCCAAACAATCCCAAATCCTCCACCTCTGCAAATTCGGCTTACTTTTCGATGCGATTCGAATCCTCAACTCCATAAACCCCTCTGAAATCACCCTCAAACCACTCGTCTACGCTTCACTCTTGCAAACATGTACCAAGGCCGTTTCTCTCACCCACGGCCTCCAAATCCACGCCCACGTCATCAAGTCCGGCCTCGAAACCGACCGGTTCGTCGGGAACAGCTTGCTCTCTCTGTACTTCAAGCTGATCCCCGACATGTCCGAAACCCGGAAAGTGTTTGATGCTCTGTATTTCAGAGATGTGATATCGTGGACGTCAATGATCACCGGATACGTTCGCGCCGGAAAGCCTGCTACCTCAGTTGCATTGTTTTGGGAGATGGTCAGTTTCGGGATTGAGCCGAATGACTTCACTGTATCCGCGGTGGTCAAGGCTTGTTCGCAGGTCGGGTACTACAGGCTCGGCCGGTGCTTGCATGGAGTGGTTGTGAGTCGTGGGTTTGATTCGAATCCGGTCATTATTACTGCTTTGATTGACATGTATGGGAGAAATCATAGGCCGGGGGATGCACGCCATCTATTTGATGAAATGATTGAACCGGGGGCCATATGTTGGACGTCGGTGATTTCAGCGCTGACGCGGAACGATTTGTTTAGGGAAGCATTGGGGTATTTTTATTTGATGCAGAGATGTCATGGGTTGTTCCCGGATGGTTTTACGTTTGGGACTGTATTGACTGCTTGTGGCAATCTGGGGAGGCTGAGGCAAGGTCGAGAAATGCACGCGAAGGTCGTTACGTACGGACTTTGTGGAAATGTGGTTGTGGAGAGTAGCTTGGTTGACATGTATGGGAAATGTGGGAGTGTAGATGATTCTCGGCGTGTTTTTGATAGGATGCCCGTGAAGAACTCTGTTTCGTGGTCTGCGTTGCTTGGGGTGTACTGTCAAGCGGGAGAATTTGAGTCTGTCATTAAGCATTTCAGGGAGATGGAAGGGGCTGACCTGTACTGCTTTGGAACTGTTCTTCGTGCGTGTGCAGGCTTGGCGGCTGTACAACATGGGAAGGAGGTTCATTGCCAGTATGTGAGAAGGTGTGGTTGGAGAGATGTGATTGTTGAGTCGGCTCTAGTTAATCTCTATGCAAAATGTGGTTGCATAGATTTTGCGCGTAGCATTTTCAGCCAGATGCTAGTTAGGAATTTGATTACATGGAACTCGATGATTTGTGGGTATGCTCAAAATGGGCAAGGTGAAGAAGCTCTAGGAATATTTGATGAGATGATTAAAGAGGGGATGAAGCCTGACTATATCAGCTTTATTGGGGTTCTATTTGCTTGTAGTCATGCAGGTTTGGTTGATCAAGGGCGAAGGAACTTTATCTTGATGACAAAAGAGTATGGGATCAAACCTGGGATTGAACATTATTGTTGCATGGTTGATCTCCTCGGCCGTGCTGGGCTACTGGAAGAAGCAGAGAATTTAATAGAGAGTGCAGAGTGTAGAAATGATTCTTCCCTTTGGGCAGTTCTTCTAGGTGCTAGCACAACCTGTACGAACTCTGCTACTGCAGAGCGCATAGCCAAGAAAATGATAAAACTTGAACCTGACTACCATTTGAGTTATGTTCTTCTAGCTAATGTCTACAGATCAGTAGGCCGATGGGATGATGCCATGGAGATTGCCAAGCTGATGCAAGATAGAGGAGTTAAGAAGACTCCGGCTAAGAGCTGGATTGAATCTAATAGTAGATTGGGTTCTCGTCTGCATGTCGGTGATGTGCACATACCTAGAAAAATCGATTTTAATGCCGTTTGGGGACATTGTGTGAAAGCGAGAATAGACGGAAGTGAATCCAAAGTTGAGTATCAACCCCTGTTGGAGGCTGGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

655

Amino Acids

73.17

Weight (kDa)

8.4

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	124 - 172	5e-10	PPR repeat family
PPR	PF01535	127 - 157	6.4e-06	PPR repeat
PPR_1	PF12854	422 - 452	6e-06	PPR repeat
PPR_2	PF13041	425 - 471	4.7e-11	PPR repeat family
PPR	PF01535	427 - 456	7e-11	PPR repeat
E_motif	PF20431	547 - 604	1.4e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03540
fragaria_vesca	FvH4_6g44920
malus_domestica	MD09G1091800.v1.1
prunus_persica	Prupe.3G233200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162111
rosa_laevigata	RLG00000021323
rosa_multiflora	Rmu_co8285235.1_g000001 Rmu_sc0004020.1_g000032 Rmu_sc0004020.1_g000033
rosa_roxburghii	Rroxscaffold_2G00088290
rosa_rugosa	Rorug02G0494700
rosa_samantha	Rh2AG561200 Rh2BG574300 Rh2CG544600
rosa_wichuraiana	Rw2G046470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	2 cut(s)	392, 695
Acc36I	ACCTGC	2 cut(s)	508, 1412
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccI	GTMKAC	2 cut(s)	183, 1716
AccII	CGCG	5 cut(s)	414, 497, 715, 860, 1243
AciI	CCGC	5 cut(s)	495, 497, 715, 1025, 1121
AclWI	GGATC	2 cut(s)	316, 1484
AcoI	YGGCCR	2 cut(s)	538, 1522
AcsI	RAATTY	4 cut(s)	107, 1031, 1273, 1552
AcyI	GRCGYC	2 cut(s)	389, 692
AfaI	GTAC	8 cut(s)	208, 311, 527, 875, 1016, 1082, 1128, 1627
AfeI	AGCGCT	1 cut(s)	708
AfiI	CCNNNNNNNGG	3 cut(s)	342, 687, 1954
AflIII	ACRYGT	4 cut(s)	203, 330, 612, 918
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	6 cut(s)	19, 316, 671, 1493, 1676, 1811
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	1483
AjuI	GAANNNNNNNTTGG	2 cut(s)	1156, 1188
Alw21I	GWGCWC	1 cut(s)	1857
Alw44I	GTGCAC	1 cut(s)	1853
AlwI	GGATC	2 cut(s)	316, 1484
Aor51HI	AGCGCT	1 cut(s)	708
AoxI	GGCC	8 cut(s)	213, 232, 265, 538, 632, 678, 1522, 1729
ApaLI	GTGCAC	1 cut(s)	1853
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	4 cut(s)	107, 1031, 1273, 1552
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	3 cut(s)	8, 482, 1582
AspLEI	GCGC	5 cut(s)	24, 416, 709, 1243, 1650
AspS9I	GGNCC	1 cut(s)	678
AsuC2I	CCSGG	4 cut(s)	343, 636, 675, 782
AsuHPI	GGTGA	6 cut(s)	157, 217, 391, 709, 1337, 1859
AsuII	TTCGAA	2 cut(s)	133, 581
AsuNHI	GCTAGC	1 cut(s)	1613
BaeGI	GKGCMC	1 cut(s)	1857
BbsI	GAAGAC	1 cut(s)	1793
Bbv12I	GWGCWC	1 cut(s)	1857
BbvCI	CCTCAGC	1 cut(s)	836
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	5 cut(s)	448, 657, 779, 1057, 1728
BceAI	ACGGC	4 cut(s)	200, 247, 1509, 1868
BcgI	CGANNNNNNTGC	2 cut(s)	1862, 1896
BciT130I	CCWGG	1 cut(s)	1485
BciVI	GTATCC	2 cut(s)	398, 502
BclI	TGATCA	2 cut(s)	396, 1432
BcnI	CCSGG	4 cut(s)	343, 636, 675, 782
BfaI	CTAG	7 cut(s)	1202, 1265, 1337, 1607, 1614, 1706, 1863
BfmI	CTRYAG	3 cut(s)	529, 1641, 1717
BfoI	RGCGCY	2 cut(s)	25, 710
BfuAI	ACCTGC	2 cut(s)	508, 1412
BfuI	GTATCC	2 cut(s)	398, 502
BisI	GCNGC	2 cut(s)	31, 1122
BlsI	GCNGC	2 cut(s)	32, 1123
Bme1390I	CCNGG	5 cut(s)	343, 636, 675, 782, 1485
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	5 cut(s)	343, 636, 675, 782, 1485
BmsI	GCATC	8 cut(s)	115, 346, 631, 747, 960, 1251, 1732, 1755
BmtI	GCTAGC	1 cut(s)	1617
BpiI	GAAGAC	1 cut(s)	1793
Bpu10I	CCTNAGC	1 cut(s)	836
Bpu14I	TTCGAA	2 cut(s)	133, 581
BpuMI	CCSGG	4 cut(s)	343, 636, 675, 782
Bsa29I	ATCGAT	1 cut(s)	1872
BsaAI	YACGTR	1 cut(s)	873
BsaBI	GATNNNNATC	2 cut(s)	134, 582
BsaHI	GRCGYC	2 cut(s)	389, 692
BsaJI	CCNNGG	8 cut(s)	210, 229, 495, 635, 674, 1484, 1519, 1746
BsaWI	WCCGGW	3 cut(s)	279, 401, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 687, 1954
Bse118I	RCCGGY	2 cut(s)	279, 540
Bse1I	ACTGG	2 cut(s)	1153, 1542
Bse3DI	GCAATG	2 cut(s)	25, 1147
Bse8I	GATNNNNATC	2 cut(s)	134, 582
BseBI	CCWGG	1 cut(s)	1485
BseCI	ATCGAT	1 cut(s)	1872
BseDI	CCNNGG	8 cut(s)	210, 229, 495, 635, 674, 1484, 1519, 1746
BseGI	GGATG	5 cut(s)	646, 790, 975, 1374, 1744
BseJI	GATNNNNATC	2 cut(s)	134, 582
BseLI	CCNNNNNNNGG	3 cut(s)	342, 687, 1954
BseMI	GCAATG	2 cut(s)	25, 1147
BseMII	CTCAG	2 cut(s)	447, 827
BseNI	ACTGG	2 cut(s)	1153, 1542
BseRI	GAGGAG	2 cut(s)	1508, 1791
BseSI	GKGCMC	1 cut(s)	1857
BseX3I	CGGCCG	2 cut(s)	538, 1522
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	1529
BsgI	GTGCAG	2 cut(s)	1131, 1587
Bsh1236I	CGCG	5 cut(s)	414, 497, 715, 860, 1243
Bsh1285I	CGRYCG	3 cut(s)	280, 541, 1525
BshFI	GGCC	8 cut(s)	215, 234, 267, 540, 634, 680, 1524, 1731
BshTI	ACCGGT	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	1872
BsiEI	CGRYCG	3 cut(s)	280, 541, 1525
BsiHKAI	GWGCWC	1 cut(s)	1857
BsiWI	CGTACG	1 cut(s)	873
BslFI	GGGAC	2 cut(s)	814, 1905
BslI	CCNNNNNNNGG	3 cut(s)	342, 687, 1954
BsmFI	GGGAC	2 cut(s)	814, 1905
BsnI	GGCC	8 cut(s)	215, 234, 267, 540, 634, 680, 1524, 1731
Bsp119I	TTCGAA	2 cut(s)	133, 581
Bsp1286I	GDGCHC	1 cut(s)	1857
Bsp1407I	TGTACA	1 cut(s)	1126
Bsp143I	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
Bsp19I	CCATGG	1 cut(s)	1746
BspACI	CCGC	5 cut(s)	495, 497, 715, 1025, 1121
BspANI	GGCC	8 cut(s)	215, 234, 267, 540, 634, 680, 1524, 1731
BspCNI	CTCAG	2 cut(s)	446, 828
BspDI	ATCGAT	1 cut(s)	1872
BspFNI	CGCG	5 cut(s)	414, 497, 715, 860, 1243
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	1645
BspMI	ACCTGC	2 cut(s)	508, 1412
BspOI	GCTAGC	1 cut(s)	1617
BspPI	GGATC	2 cut(s)	316, 1484
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	2 cut(s)	133, 581
BsrDI	GCAATG	2 cut(s)	25, 1147
BsrFI	RCCGGY	2 cut(s)	279, 540
BsrGI	TGTACA	1 cut(s)	1126
BsrI	ACTGG	2 cut(s)	1153, 1542
BssAI	RCCGGY	2 cut(s)	279, 540
BssECI	CCNNGG	8 cut(s)	210, 229, 495, 635, 674, 1484, 1519, 1746
BssMI	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
BssNI	GRCGYC	2 cut(s)	389, 692
BssT1I	CCWWGG	2 cut(s)	210, 1746
Bst2UI	CCWGG	1 cut(s)	1485
Bst4CI	ACNGT	4 cut(s)	490, 805, 1019, 1096
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	2 cut(s)	389, 692
BstAUI	TGTACA	1 cut(s)	1126
BstBAI	YACGTR	1 cut(s)	873
BstBI	TTCGAA	2 cut(s)	133, 581
BstC8I	GCNNGC	7 cut(s)	299, 426, 548, 646, 858, 1114, 1615
BstDEI	CTNAG	3 cut(s)	433, 836, 1797
BstDSI	CCRYGG	3 cut(s)	229, 495, 1746
BstENI	CCTNNNNNAGG	1 cut(s)	1952
BstF5I	GGATG	5 cut(s)	646, 790, 975, 1374, 1744
BstFNI	CGCG	5 cut(s)	414, 497, 715, 860, 1243
BstH2I	RGCGCY	2 cut(s)	25, 710
BstHHI	GCGC	5 cut(s)	24, 416, 709, 1243, 1650
BstKTI	GATC	6 cut(s)	324, 399, 1435, 1479, 1516, 1724
BstMBI	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
BstMCI	CGRYCG	3 cut(s)	280, 541, 1525
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 111, 1118, 1254
BstNI	CCWGG	1 cut(s)	1485
BstNSI	RCATGY	5 cut(s)	207, 334, 616, 922, 1844
BstSCI	CCNGG	5 cut(s)	341, 634, 673, 780, 1483
BstSFI	CTRYAG	3 cut(s)	529, 1641, 1717
BstSLI	GKGCMC	1 cut(s)	1857
BstSNI	TACGTA	1 cut(s)	873
BstUI	CGCG	5 cut(s)	414, 497, 715, 860, 1243
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	1793
BstZI	CGGCCG	2 cut(s)	538, 1522
Bsu15I	ATCGAT	1 cut(s)	1872
BsuI	GTATCC	2 cut(s)	398, 502
BsuRI	GGCC	8 cut(s)	215, 234, 267, 540, 634, 680, 1524, 1731
BsuTUI	ATCGAT	1 cut(s)	1872
BtgI	CCRYGG	3 cut(s)	229, 495, 1746
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	5 cut(s)	646, 790, 975, 1374, 1744
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	2 cut(s)	508, 1412
Cac8I	GCNNGC	7 cut(s)	299, 426, 548, 646, 858, 1114, 1615
CfoI	GCGC	5 cut(s)	24, 416, 709, 1243, 1650
Cfr10I	RCCGGY	2 cut(s)	279, 540
Cfr13I	GGNCC	1 cut(s)	678
Cfr42I	CCGCGG	1 cut(s)	498
ClaI	ATCGAT	1 cut(s)	1872
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	8 cut(s)	207, 310, 526, 874, 1015, 1081, 1127, 1626
CspAI	ACCGGT	1 cut(s)	279
CviQI	GTAC	8 cut(s)	207, 310, 526, 874, 1015, 1081, 1127, 1626
DdeI	CTNAG	3 cut(s)	433, 836, 1797
DpnI	GATC	6 cut(s)	323, 398, 1434, 1478, 1515, 1723
DpnII	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	538, 1522
EagI	CGGCCG	2 cut(s)	538, 1522
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EclXI	CGGCCG	2 cut(s)	538, 1522
Eco105I	TACGTA	1 cut(s)	873
Eco130I	CCWWGG	2 cut(s)	210, 1746
Eco32I	GATATC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	708
Eco52I	CGGCCG	2 cut(s)	538, 1522
EcoNI	CCTNNNNNAGG	1 cut(s)	1952
EcoRII	CCWGG	1 cut(s)	1483
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	210, 1746
ErhI	CCWWGG	2 cut(s)	210, 1746
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	2 cut(s)	814, 1905
FauI	CCCGC	1 cut(s)	1018
FauNDI	CATATG	1 cut(s)	683
FbaI	TGATCA	2 cut(s)	396, 1432
FblI	GTMKAC	2 cut(s)	183, 1716
Fnu4HI	GCNGC	2 cut(s)	31, 1122
FokI	GGATG	5 cut(s)	653, 797, 982, 1381, 1751
Fsp4HI	GCNGC	2 cut(s)	31, 1122
FspBI	CTAG	7 cut(s)	1202, 1265, 1337, 1607, 1614, 1706, 1863
GlaI	GCGC	5 cut(s)	23, 415, 708, 1242, 1649
GluI	GCNGC	2 cut(s)	31, 1122
GsaI	CCCAGC	1 cut(s)	1533
HaeII	RGCGCY	2 cut(s)	25, 710
HaeIII	GGCC	8 cut(s)	215, 234, 267, 540, 634, 680, 1524, 1731
HgaI	GACGC	1 cut(s)	721
HhaI	GCGC	5 cut(s)	24, 416, 709, 1243, 1650
Hin1I	GRCGYC	2 cut(s)	389, 692
Hin6I	GCGC	5 cut(s)	22, 414, 707, 1241, 1648
HinP1I	GCGC	5 cut(s)	22, 414, 707, 1241, 1648
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HphI	GGTGA	6 cut(s)	157, 217, 391, 709, 1337, 1859
Hpy166II	GTNNAC	6 cut(s)	184, 387, 916, 1015, 1717, 1855
Hpy188I	TCNGA	3 cut(s)	160, 337, 371
Hpy188III	TCNNGA	4 cut(s)	289, 466, 848, 1456
Hpy8I	GTNNAC	6 cut(s)	184, 387, 916, 1015, 1717, 1855
Hpy99I	CGWCG	2 cut(s)	290, 697
HpyAV	CCTTC	5 cut(s)	856, 1061, 1132, 1158, 1437
HpyCH4III	ACNGT	4 cut(s)	490, 805, 1019, 1096
HpyCH4IV	ACGT	6 cut(s)	252, 389, 408, 692, 794, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 111, 1118, 1254
HpyF3I	CTNAG	3 cut(s)	433, 836, 1797
HpySE526I	ACGT	6 cut(s)	252, 389, 408, 692, 794, 872
Hsp92I	GRCGYC	2 cut(s)	389, 692
HspAI	GCGC	5 cut(s)	22, 414, 707, 1241, 1648
Ksp22I	TGATCA	2 cut(s)	396, 1432
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
LguI	GCTCTTC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	8 cut(s)	115, 346, 631, 747, 960, 1251, 1732, 1755
MaeI	CTAG	7 cut(s)	1202, 1265, 1337, 1607, 1614, 1706, 1863
MaeII	ACGT	6 cut(s)	252, 389, 408, 692, 794, 872
MaeIII	GTNAC	1 cut(s)	868
MalI	GATC	6 cut(s)	323, 398, 1434, 1478, 1515, 1723
MboI	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
MhlI	GDGCHC	1 cut(s)	1857
MluCI	AATT	4 cut(s)	107, 1031, 1273, 1552
MlyI	GAGTC	4 cut(s)	574, 1046, 1202, 1783
MmeI	TCCRAC	3 cut(s)	668, 1154, 1932
MroXI	GAANNNNTTC	3 cut(s)	8, 482, 1582
MseI	TTAA	6 cut(s)	1047, 1206, 1359, 1556, 1782, 1878
MslI	CAYNNNNRTG	1 cut(s)	1845
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	5 cut(s)	343, 636, 675, 782, 1485
MvaI	CCWGG	1 cut(s)	1485
MvnI	CGCG	5 cut(s)	414, 497, 715, 860, 1243
MwoI	GCNNNNNNNGC	4 cut(s)	30, 111, 1118, 1254
NciI	CCSGG	4 cut(s)	343, 636, 675, 782
NcoI	CCATGG	1 cut(s)	1746
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
NheI	GCTAGC	1 cut(s)	1613
NlaIV	GGNNCC	1 cut(s)	679
NmeAIII	GCCGAG	3 cut(s)	516, 931, 1500
NspI	RCATGY	5 cut(s)	207, 334, 616, 922, 1844
NspV	TTCGAA	2 cut(s)	133, 581
PciI	ACATGT	4 cut(s)	203, 330, 612, 918
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	864, 998
PdmI	GAANNNNTTC	3 cut(s)	8, 482, 1582
PfeI	GAWTC	8 cut(s)	130, 135, 578, 583, 947, 1583, 1811, 1925
Pfl23II	CGTACG	1 cut(s)	873
PflMI	CCANNNNNTGG	1 cut(s)	687
PfoI	TCCNGGA	1 cut(s)	780
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	32, 1123
PleI	GAGTC	4 cut(s)	573, 1045, 1201, 1783
PpsI	GAGTC	4 cut(s)	573, 1045, 1201, 1783
Ppu21I	YACGTR	1 cut(s)	873
PscI	ACATGT	4 cut(s)	203, 330, 612, 918
Psp6I	CCWGG	1 cut(s)	1483
PspFI	CCCAGC	1 cut(s)	1529
PspGI	CCWGG	1 cut(s)	1483
PspLI	CGTACG	1 cut(s)	873
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	678
PsrI	GAACNNNNNNTAC	2 cut(s)	1813, 1845
PstI	CTGCAG	1 cut(s)	1645
RsaI	GTAC	8 cut(s)	208, 311, 527, 875, 1016, 1082, 1128, 1627
RsaNI	GTAC	8 cut(s)	207, 310, 526, 874, 1015, 1081, 1127, 1626
RseI	CAYNNNNRTG	1 cut(s)	1845
SacII	CCGCGG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	6 cut(s)	1047, 1206, 1359, 1556, 1782, 1878
SatI	GCNGC	2 cut(s)	31, 1122
Sau3AI	GATC	6 cut(s)	321, 396, 1432, 1476, 1513, 1721
Sau96I	GGNCC	1 cut(s)	678
SchI	GAGTC	4 cut(s)	574, 1046, 1202, 1783
ScrFI	CCNGG	5 cut(s)	343, 636, 675, 782, 1485
SduI	GDGCHC	1 cut(s)	1857
SfaNI	GCATC	8 cut(s)	115, 346, 631, 747, 960, 1251, 1732, 1755
SfcI	CTRYAG	3 cut(s)	529, 1641, 1717
Sfr303I	CCGCGG	1 cut(s)	498
SfuI	TTCGAA	2 cut(s)	133, 581
SgrBI	CCGCGG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	1845
SnaBI	TACGTA	1 cut(s)	873
Sse9I	AATT	4 cut(s)	107, 1031, 1273, 1552
SsiI	CCGC	5 cut(s)	495, 497, 715, 1025, 1121
SspI	AATATT	1 cut(s)	1344
SspMI	CTAG	7 cut(s)	1202, 1265, 1337, 1607, 1614, 1706, 1863
StyD4I	CCNGG	5 cut(s)	341, 634, 673, 780, 1483
StyI	CCWWGG	2 cut(s)	210, 1746
TaaI	ACNGT	4 cut(s)	490, 805, 1019, 1096
TaiI	ACGT	6 cut(s)	255, 392, 411, 695, 797, 875
TaqI	TCGA	7 cut(s)	123, 133, 270, 581, 847, 1292, 1872
TasI	AATT	4 cut(s)	107, 1031, 1273, 1552
TatI	WGTACW	4 cut(s)	309, 1014, 1080, 1126
TauI	GCSGC	1 cut(s)	1124
TfiI	GAWTC	8 cut(s)	130, 135, 578, 583, 947, 1583, 1811, 1925
Tru1I	TTAA	6 cut(s)	1047, 1206, 1359, 1556, 1782, 1878
Tru9I	TTAA	6 cut(s)	1047, 1206, 1359, 1556, 1782, 1878
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	4 cut(s)	17, 675, 1136, 1385
TspGWI	ACGGA	2 cut(s)	891, 1932
TspRI	CASTG	1 cut(s)	493
Van91I	CCANNNNNTGG	1 cut(s)	687
VneI	GTGCAC	1 cut(s)	1853
XagI	CCTNNNNNAGG	1 cut(s)	1952
XapI	RAATTY	4 cut(s)	107, 1031, 1273, 1552
XceI	RCATGY	5 cut(s)	207, 334, 616, 922, 1844
XmiI	GTMKAC	2 cut(s)	183, 1716
XmnI	GAANNNNTTC	3 cut(s)	8, 482, 1582
XspI	CTAG	7 cut(s)	1202, 1265, 1337, 1607, 1614, 1706, 1863
ZraI	GACGTC	2 cut(s)	390, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.