Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8295021.1

Orthogroup ID

OG0017815

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 657

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8295021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

gtcctccgtgacctacatgccacgtacggcggcatcgtctctgtccccgtccccttctcttaccccgtcatcatgatcgccgaccgctccctcgcccaccaagcccttgtcaacaacggtgccgtttttgccgaccgccctgaggtccaaccatccatcaagttcatcaccagcaaccaacgcatcatcgccaccgctggctacggctctacgtggcgcctcctgcgccggaacctcgtctctgagctcatggttccgtctcggctcaaggccttggccggttcccggaagtgggccctagacagcctcgccagccgtcttaccacgtcgtcgtcatcgggacgtaacatggtgggagttttggatcatttccggatgtccatgacgggtttgtttctgtacatgtgttttggtgagaagatggaggaggagaaggtgagagaaattgtggacgttcagcgtcggcttctgttgggtttggtcggagagtttcagattctcaactttggccctgcatggtttaccaagattttgttttataagcggtggagtcgcttcttccaggttctccagcagcaaataaacctcctgctgcctctgatacaagcacggaagaaggtgacatcttttctatttttgtttttcttagtcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

218

Amino Acids

24.88

Weight (kDa)

10.48

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017815)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035991
rosa_laevigata	RLG00000033658
rosa_multiflora	Rmu_co8295021.1_g000001 Rmu_sc0000084.1_g000043 Rmu_sc0001493.1_g000014
rosa_roxburghii	Rroxscaffold_1G00044750
rosa_rugosa	Rorug05G0152000
rosa_samantha	Rh5AG246000 Rh5BG246400 Rh5CG277200 Rh5DG254900
rosa_wichuraiana	Rw5G022600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	540
AccB1I	GGYRCC	2 cut(s)	119, 216
AccBSI	CCGCTC	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	5 cut(s)	30, 85, 136, 195, 544
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	2 cut(s)	26, 401
AfiI	CCNNNNNNNGG	4 cut(s)	142, 285, 291, 292
AflIII	ACRYGT	1 cut(s)	402
AjiI	CACGTC	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	3 cut(s)	43, 244, 264
AlwI	GGATC	1 cut(s)	372
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	4 cut(s)	270, 276, 294, 508
ApaI	GGGCCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	574, 592
AspLEI	GCGC	2 cut(s)	219, 228
AspS9I	GGNCC	4 cut(s)	145, 294, 295, 509
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	4 cut(s)	160, 425, 448, 631
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	119, 216
BanII	GRGCYC	2 cut(s)	249, 298
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	579, 586
BccI	CCATC	3 cut(s)	160, 164, 415
BceAI	ACGGC	4 cut(s)	43, 107, 220, 300
BciT130I	CCWGG	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	43, 244, 264
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	220
BisI	GCNGC	3 cut(s)	31, 575, 593
BlsI	GCNGC	3 cut(s)	32, 576, 594
Bme1390I	CCNGG	2 cut(s)	286, 563
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	4 cut(s)	145, 294, 295, 509
BmiI	GGNNCC	6 cut(s)	121, 218, 233, 255, 283, 296
BmrFI	CCNGG	2 cut(s)	286, 563
BmsI	GCATC	2 cut(s)	42, 192
BpmI	CTGGAG	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	286
BsaAI	YACGTR	2 cut(s)	24, 213
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 285, 291, 292
Bse118I	RCCGGY	1 cut(s)	278
Bse21I	CCTNAGG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	152, 381
BseLI	CCNNNNNNNGG	4 cut(s)	142, 285, 291, 292
BseMII	CTCAG	2 cut(s)	132, 234
BseRI	GAGGAG	2 cut(s)	440, 443
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	579, 586
Bsh1285I	CGRYCG	2 cut(s)	85, 136
BshFI	GGCC	4 cut(s)	272, 278, 296, 510
BshNI	GGYRCC	2 cut(s)	119, 216
BsiEI	CGRYCG	2 cut(s)	85, 136
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	4 cut(s)	229, 279, 286, 373
BsiWI	CGTACG	1 cut(s)	24
BslFI	GGGAC	3 cut(s)	29, 35, 354
BslI	CCNNNNNNNGG	4 cut(s)	142, 285, 291, 292
BsmAI	GTCTC	3 cut(s)	43, 244, 264
BsmBI	CGTCTC	3 cut(s)	43, 244, 264
BsmFI	GGGAC	3 cut(s)	29, 35, 354
BsnI	GGCC	4 cut(s)	272, 278, 296, 510
Bsp120I	GGGCCC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	249, 298
Bsp13I	TCCGGA	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	75, 364
BspACI	CCGC	5 cut(s)	30, 85, 136, 195, 544
BspANI	GGCC	4 cut(s)	272, 278, 296, 510
BspCNI	CTCAG	2 cut(s)	133, 235
BspEI	TCCGGA	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	6 cut(s)	121, 218, 233, 255, 283, 296
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	2 cut(s)	119, 216
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	75, 364
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	217
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	2 cut(s)	24, 213
BstC8I	GCNNGC	2 cut(s)	199, 313
BstDEI	CTNAG	3 cut(s)	141, 243, 646
BstF5I	GGATG	2 cut(s)	152, 381
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	219, 228
BstKTI	GATC	2 cut(s)	78, 367
BstMAI	GTCTC	3 cut(s)	43, 244, 264
BstMBI	GATC	2 cut(s)	75, 364
BstMCI	CGRYCG	2 cut(s)	85, 136
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 128, 180, 223, 225, 312
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	2 cut(s)	20, 406
BstSCI	CCNGG	2 cut(s)	284, 561
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	579, 586
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	4 cut(s)	272, 278, 296, 510
BtgZI	GCGATG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	152, 381
Cac8I	GCNNGC	2 cut(s)	199, 313
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	2 cut(s)	219, 228
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	4 cut(s)	145, 294, 295, 509
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	25, 400
CviAII	CATG	7 cut(s)	17, 73, 250, 349, 382, 403, 516
CviQI	GTAC	2 cut(s)	25, 400
DdeI	CTNAG	3 cut(s)	141, 243, 646
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	2 cut(s)	77, 366
DpnII	GATC	2 cut(s)	75, 364
EaeI	YGGCCR	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	2 cut(s)	249, 298
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	247
Eco81I	CCTNAGG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	249, 298
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	3 cut(s)	43, 244, 264
FaeI	CATG	7 cut(s)	20, 76, 253, 352, 385, 406, 519
FaiI	YATR	8 cut(s)	18, 74, 251, 350, 383, 404, 517, 540
FaqI	GGGAC	3 cut(s)	29, 35, 354
FatI	CATG	7 cut(s)	16, 72, 249, 348, 381, 402, 515
Fnu4HI	GCNGC	3 cut(s)	31, 575, 593
FokI	GGATG	2 cut(s)	139, 388
FriOI	GRGCYC	2 cut(s)	249, 298
Fsp4HI	GCNGC	3 cut(s)	31, 575, 593
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	2 cut(s)	218, 227
GluI	GCNGC	3 cut(s)	31, 575, 593
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	4 cut(s)	272, 278, 296, 510
HapII	CCGG	4 cut(s)	229, 279, 286, 373
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	219, 228
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	7 cut(s)	20, 76, 253, 352, 385, 406, 519
Hin6I	GCGC	2 cut(s)	217, 226
HinP1I	GCGC	2 cut(s)	217, 226
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	496, 550
HpaII	CCGG	4 cut(s)	229, 279, 286, 373
HphI	GGTGA	4 cut(s)	160, 425, 448, 631
Hpy166II	GTNNAC	3 cut(s)	112, 451, 522
Hpy188I	TCNGA	4 cut(s)	244, 485, 495, 600
Hpy188III	TCNNGA	3 cut(s)	73, 339, 373
Hpy8I	GTNNAC	3 cut(s)	112, 451, 522
Hpy99I	CGWCG	3 cut(s)	331, 334, 465
HpyAV	CCTTC	3 cut(s)	64, 427, 610
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	5 cut(s)	23, 212, 326, 343, 453
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 128, 180, 223, 225, 312
HpyF3I	CTNAG	3 cut(s)	141, 243, 646
HpySE526I	ACGT	5 cut(s)	23, 212, 326, 343, 453
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	7 cut(s)	20, 76, 253, 352, 385, 406, 519
HspAI	GCGC	2 cut(s)	217, 226
KasI	GGCGCC	1 cut(s)	216
Kpn2I	TCCGGA	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	75, 364
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	2 cut(s)	579, 586
LweI	GCATC	2 cut(s)	42, 192
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	5 cut(s)	23, 212, 326, 343, 453
MaeIII	GTNAC	3 cut(s)	8, 344, 619
MalI	GATC	2 cut(s)	77, 366
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	75, 364
MboII	GAAGA	3 cut(s)	430, 550, 625
MhlI	GDGCHC	2 cut(s)	249, 298
MluCI	AATT	2 cut(s)	444, 652
Mly113I	GGCGCC	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	2 cut(s)	172, 463
MroI	TCCGGA	1 cut(s)	372
MseI	TTAA	1 cut(s)	655
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	4 cut(s)	229, 279, 286, 373
MspR9I	CCNGG	2 cut(s)	286, 563
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	6 cut(s)	101, 128, 180, 223, 225, 312
NarI	GGCGCC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	75, 364
NlaIII	CATG	7 cut(s)	20, 76, 253, 352, 385, 406, 519
NlaIV	GGNNCC	6 cut(s)	121, 218, 233, 255, 283, 296
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	8, 619
NspI	RCATGY	2 cut(s)	20, 406
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	272
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	496
Pfl23II	CGTACG	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	32, 576, 594
PleI	GAGTC	1 cut(s)	558
PluTI	GGCGCC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	558
Ppu21I	YACGTR	2 cut(s)	24, 213
PscI	ACATGT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	6 cut(s)	121, 218, 233, 255, 283, 296
PspOMI	GGGCCC	1 cut(s)	294
PspPI	GGNCC	4 cut(s)	145, 294, 295, 509
RsaI	GTAC	2 cut(s)	26, 401
RsaNI	GTAC	2 cut(s)	25, 400
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	655
SatI	GCNGC	3 cut(s)	31, 575, 593
Sau3AI	GATC	2 cut(s)	75, 364
Sau96I	GGNCC	4 cut(s)	145, 294, 295, 509
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	286, 563
SduI	GDGCHC	2 cut(s)	249, 298
SfaNI	GCATC	2 cut(s)	42, 192
SfoI	GGCGCC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	444, 652
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	5 cut(s)	30, 85, 136, 195, 544
SspDI	GGCGCC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	284, 561
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	5 cut(s)	26, 215, 329, 346, 456
TasI	AATT	2 cut(s)	444, 652
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	655
Tru9I	TTAA	1 cut(s)	655
TseFI	GTSAC	2 cut(s)	8, 619
TseI	GCWGC	2 cut(s)	574, 592
Tsp45I	GTSAC	2 cut(s)	8, 619
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	2 cut(s)	246, 625
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	2 cut(s)	20, 406
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.