Rmu_sc0000084.1_g000043

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000084.1
OG0017815
Physical Location & Seq
Reverse (-)
178573 .. 179409
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000084.1_g000043.1.cds

Sequence Viewer

Length: 837 bp
atgggagcctggctccttatacccttctccgtcttcctcactttcaccctaaagttcatcctcttcccctacaaaccctcccacaaactcaacgccccactccctccgggtcccaccaccatacccgtcgtcggtaccttcatatggctcttcaaactcgcctcccgcggcatcgagcccgtcctccgtgacctacatgccacgtacggcggcatcgtctctgtccccgtccccttctcttaccccgtcatcatgatcgccgaccgctccctcgcccaccaagcccttgtcaacaacggtgccgtttttgccgaccgccctgaggtccaaccatccatcaagttcatcaccagcaaccaacgcatcatcgccaccgctggctacggctctacgtggcgcctcctgcgccggaacctcgtctctgagctcatggttccgtctcggctcaaggccttggccggttcccggaagtgggccctagacagcctcgccagccgtcttgccacgtcgtcgtcatcgggacgtaacatggtgggagttttggatcatttccggatgtccatgacgggtttgtttctgtacatgtgttttggtgagaagatggaggaggagaaggtgagagaaattgtggacgttcagcgtcggcttctgttgggtttggtcggagagtttcagattctcaactttggccctgcatggtttaccaagattttgttttataagcggtggagtcgcttcttccaggttctccagcagcaaataaacctcctgctgcctctgatacaagcacggaagaaggtgacatcttttctatttttgtttttcttagtcaattaa

Protein Analysis

278

Amino Acids

31.56

Weight (kDa)

10.5

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017815)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0035991
rosa_laevigata RLG00000033658
rosa_multiflora Rmu_co8295021.1_g000001 Rmu_sc0000084.1_g000043 Rmu_sc0001493.1_g000014
rosa_roxburghii Rroxscaffold_1G00044750
rosa_rugosa Rorug05G0152000
rosa_samantha Rh5AG246000 Rh5BG246400 Rh5CG277200 Rh5DG254900
rosa_wichuraiana Rw5G022600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 3 cut(s) 134, 299, 396
AccBSI CCGCTC 1 cut(s) 267
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 552
AciI CCGC 7 cut(s) 166, 168, 210, 265, 316, 375, 724
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 397
AfaI GTAC 3 cut(s) 136, 206, 581
AfiI CCNNNNNNNGG 6 cut(s) 131, 144, 322, 465, 471, 472
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 1 cut(s) 154
AjiI CACGTC 1 cut(s) 507
AjnI CCWGG 2 cut(s) 8, 741
AluBI AGCT 1 cut(s) 427
AluI AGCT 1 cut(s) 427
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 3 cut(s) 223, 424, 444
AlwI GGATC 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 552
AoxI GGCC 4 cut(s) 450, 456, 474, 688
ApaI GGGCCC 1 cut(s) 478
ApeKI GCWGC 2 cut(s) 754, 772
Asp718I GGTACC 1 cut(s) 134
AspLEI GCGC 2 cut(s) 399, 408
AspS9I GGNCC 5 cut(s) 110, 325, 474, 475, 689
AsuC2I CCSGG 2 cut(s) 108, 466
AsuHPI GGTGA 5 cut(s) 37, 340, 605, 628, 811
AvaII GGWCC 2 cut(s) 110, 325
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 478
BanI GGYRCC 3 cut(s) 134, 299, 396
BanII GRGCYC 3 cut(s) 180, 429, 478
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 759, 766
BccI CCATC 3 cut(s) 340, 344, 595
BceAI ACGGC 4 cut(s) 223, 287, 400, 480
BciT130I CCWGG 2 cut(s) 10, 743
BcnI CCSGG 2 cut(s) 108, 466
BcoDI GTCTC 3 cut(s) 223, 424, 444
BfaI CTAG 1 cut(s) 479
BfoI RGCGCY 1 cut(s) 400
BisI GCNGC 4 cut(s) 169, 211, 755, 773
BlsI GCNGC 4 cut(s) 170, 212, 756, 774
Bme1390I CCNGG 4 cut(s) 10, 108, 466, 743
Bme18I GGWCC 2 cut(s) 110, 325
BmgBI CACGTC 1 cut(s) 507
BmgT120I GGNCC 5 cut(s) 110, 325, 474, 475, 689
BmrFI CCNGG 4 cut(s) 10, 108, 466, 743
BmsI GCATC 3 cut(s) 180, 222, 372
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 734
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 108, 466
BsaAI YACGTR 2 cut(s) 204, 393
BsaHI GRCGYC 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 166, 453
BsaWI WCCGGW 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 144, 322, 465, 471, 472
Bse118I RCCGGY 1 cut(s) 458
Bse21I CCTNAGG 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 552
BseBI CCWGG 2 cut(s) 10, 743
BseDI CCNNGG 2 cut(s) 166, 453
BseGI GGATG 3 cut(s) 57, 332, 561
BseLI CCNNNNNNNGG 6 cut(s) 131, 144, 322, 465, 471, 472
BseMII CTCAG 2 cut(s) 312, 414
BseRI GAGGAG 2 cut(s) 620, 623
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 2 cut(s) 759, 766
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 2 cut(s) 265, 316
BshFI GGCC 4 cut(s) 452, 458, 476, 690
BshNI GGYRCC 3 cut(s) 134, 299, 396
BsiEI CGRYCG 2 cut(s) 265, 316
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 5 cut(s) 107, 409, 459, 466, 553
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 4 cut(s) 96, 209, 215, 534
BslI CCNNNNNNNGG 6 cut(s) 131, 144, 322, 465, 471, 472
BsmAI GTCTC 3 cut(s) 223, 424, 444
BsmBI CGTCTC 3 cut(s) 223, 424, 444
BsmFI GGGAC 4 cut(s) 96, 209, 215, 534
BsnI GGCC 4 cut(s) 452, 458, 476, 690
Bsp120I GGGCCC 1 cut(s) 474
Bsp1286I GDGCHC 3 cut(s) 180, 429, 478
Bsp13I TCCGGA 1 cut(s) 552
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 2 cut(s) 255, 544
BspACI CCGC 7 cut(s) 166, 168, 210, 265, 316, 375, 724
BspANI GGCC 4 cut(s) 452, 458, 476, 690
BspCNI CTCAG 2 cut(s) 313, 415
BspEI TCCGGA 1 cut(s) 552
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 252
BspPI GGATC 1 cut(s) 552
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 3 cut(s) 134, 299, 396
BsrBI CCGCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 579
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 166, 453
BssMI GATC 2 cut(s) 255, 544
BssNI GRCGYC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 10, 743
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 2 cut(s) 68, 155
BstACI GRCGYC 1 cut(s) 397
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 2 cut(s) 204, 393
BstC8I GCNNGC 2 cut(s) 379, 493
BstDEI CTNAG 3 cut(s) 321, 423, 826
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 57, 332, 561
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 2 cut(s) 399, 408
BstKTI GATC 2 cut(s) 258, 547
BstMAI GTCTC 3 cut(s) 223, 424, 444
BstMBI GATC 2 cut(s) 255, 544
BstMCI CGRYCG 2 cut(s) 265, 316
BstMWI GCNNNNNNNGC 6 cut(s) 281, 308, 360, 403, 405, 492
BstNI CCWGG 2 cut(s) 10, 743
BstNSI RCATGY 2 cut(s) 200, 586
BstSCI CCNGG 4 cut(s) 8, 106, 464, 741
BstSLI GKGCMC 1 cut(s) 478
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 759, 766
BstV2I GAAGAC 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 4 cut(s) 452, 458, 476, 690
BtgI CCRYGG 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 352
BtrI CACGTC 1 cut(s) 507
BtsCI GGATG 3 cut(s) 57, 332, 561
Cac8I GCNNGC 2 cut(s) 379, 493
CciI TCATGA 1 cut(s) 252
CfoI GCGC 2 cut(s) 399, 408
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 5 cut(s) 110, 325, 474, 475, 689
Cfr42I CCGCGG 1 cut(s) 169
CseI GACGC 1 cut(s) 629
Csp6I GTAC 3 cut(s) 135, 205, 580
CviAII CATG 7 cut(s) 197, 253, 430, 529, 562, 583, 696
CviQI GTAC 3 cut(s) 135, 205, 580
DdeI CTNAG 3 cut(s) 321, 423, 826
DinI GGCGCC 1 cut(s) 398
DpnI GATC 2 cut(s) 257, 546
DpnII GATC 2 cut(s) 255, 544
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 68, 155
EarI CTCTTC 2 cut(s) 68, 155
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 453
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 3 cut(s) 180, 429, 478
Eco47I GGWCC 2 cut(s) 110, 325
Eco53kI GAGCTC 1 cut(s) 427
Eco81I CCTNAGG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 2 cut(s) 110, 475
EcoRII CCWGG 2 cut(s) 8, 741
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 3 cut(s) 180, 429, 478
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 3 cut(s) 223, 424, 444
FaeI CATG 7 cut(s) 200, 256, 433, 532, 565, 586, 699
FaqI GGGAC 4 cut(s) 96, 209, 215, 534
FatI CATG 7 cut(s) 196, 252, 429, 528, 561, 582, 695
FauI CCCGC 1 cut(s) 173
FauNDI CATATG 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 169, 211, 755, 773
FokI GGATG 3 cut(s) 44, 319, 568
FriOI GRGCYC 3 cut(s) 180, 429, 478
Fsp4HI GCNGC 4 cut(s) 169, 211, 755, 773
FspBI CTAG 1 cut(s) 479
GlaI GCGC 2 cut(s) 398, 407
GluI GCNGC 4 cut(s) 169, 211, 755, 773
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 4 cut(s) 452, 458, 476, 690
HapII CCGG 5 cut(s) 107, 409, 459, 466, 553
HgaI GACGC 1 cut(s) 629
HhaI GCGC 2 cut(s) 399, 408
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 7 cut(s) 200, 256, 433, 532, 565, 586, 699
Hin6I GCGC 2 cut(s) 397, 406
HinP1I GCGC 2 cut(s) 397, 406
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 676, 730
HpaII CCGG 5 cut(s) 107, 409, 459, 466, 553
HphI GGTGA 5 cut(s) 37, 340, 605, 628, 811
Hpy166II GTNNAC 3 cut(s) 292, 631, 702
Hpy188I TCNGA 4 cut(s) 424, 665, 675, 780
Hpy188III TCNNGA 3 cut(s) 253, 519, 553
Hpy8I GTNNAC 3 cut(s) 292, 631, 702
Hpy99I CGWCG 5 cut(s) 131, 134, 511, 514, 645
HpyAV CCTTC 5 cut(s) 34, 148, 244, 607, 790
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 5 cut(s) 203, 392, 506, 523, 633
HpyCH4V TGCA 1 cut(s) 695
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 308, 360, 403, 405, 492
HpyF3I CTNAG 3 cut(s) 321, 423, 826
HpySE526I ACGT 5 cut(s) 203, 392, 506, 523, 633
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 7 cut(s) 200, 256, 433, 532, 565, 586, 699
HspAI GCGC 2 cut(s) 397, 406
KasI GGCGCC 1 cut(s) 396
KflI GGGWCCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 552
KpnI GGTACC 1 cut(s) 138
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 255, 544
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 3 cut(s) 5, 18, 272
Lsp1109I GCAGC 2 cut(s) 759, 766
LweI GCATC 3 cut(s) 180, 222, 372
MaeI CTAG 1 cut(s) 479
MaeII ACGT 5 cut(s) 203, 392, 506, 523, 633
MaeIII GTNAC 3 cut(s) 188, 524, 799
MalI GATC 2 cut(s) 257, 546
MbiI CCGCTC 1 cut(s) 267
MboI GATC 2 cut(s) 255, 544
MboII GAAGA 6 cut(s) 25, 55, 142, 610, 730, 805
MhlI GDGCHC 3 cut(s) 180, 429, 478
MluCI AATT 2 cut(s) 624, 832
Mly113I GGCGCC 1 cut(s) 397
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 2 cut(s) 352, 643
MroI TCCGGA 1 cut(s) 552
MseI TTAA 1 cut(s) 835
MspA1I CMGCKG 2 cut(s) 168, 377
MspI CCGG 5 cut(s) 107, 409, 459, 466, 553
MspR9I CCNGG 4 cut(s) 10, 108, 466, 743
MvaI CCWGG 2 cut(s) 10, 743
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 6 cut(s) 281, 308, 360, 403, 405, 492
NarI GGCGCC 1 cut(s) 397
NciI CCSGG 2 cut(s) 108, 466
NdeI CATATG 1 cut(s) 143
NdeII GATC 2 cut(s) 255, 544
NlaIII CATG 7 cut(s) 200, 256, 433, 532, 565, 586, 699
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 188, 799
NspI RCATGY 2 cut(s) 200, 586
PagI TCATGA 1 cut(s) 252
PceI AGGCCT 1 cut(s) 452
PciI ACATGT 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 1 cut(s) 676
Pfl23II CGTACG 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 464
PkrI GCNGC 4 cut(s) 170, 212, 756, 774
PleI GAGTC 1 cut(s) 738
PluTI GGCGCC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 738
Ppu21I YACGTR 2 cut(s) 204, 393
PpuMI RGGWCCY 1 cut(s) 110
PscI ACATGT 1 cut(s) 582
PsiI TTATAA 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 8, 741
PspGI CCWGG 2 cut(s) 8, 741
PspLI CGTACG 1 cut(s) 204
PspOMI GGGCCC 1 cut(s) 474
PspPI GGNCC 5 cut(s) 110, 325, 474, 475, 689
PspPPI RGGWCCY 1 cut(s) 110
RsaI GTAC 3 cut(s) 136, 206, 581
RsaNI GTAC 3 cut(s) 135, 205, 580
SacI GAGCTC 1 cut(s) 429
SacII CCGCGG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 835
SatI GCNGC 4 cut(s) 169, 211, 755, 773
Sau3AI GATC 2 cut(s) 255, 544
Sau96I GGNCC 5 cut(s) 110, 325, 474, 475, 689
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 4 cut(s) 10, 108, 466, 743
SduI GDGCHC 3 cut(s) 180, 429, 478
SfaNI GCATC 3 cut(s) 180, 222, 372
SfoI GGCGCC 1 cut(s) 398
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SinI GGWCC 2 cut(s) 110, 325
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 2 cut(s) 624, 832
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 7 cut(s) 166, 168, 210, 265, 316, 375, 724
SspDI GGCGCC 1 cut(s) 396
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 4 cut(s) 8, 106, 464, 741
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 5 cut(s) 206, 395, 509, 526, 636
TaqI TCGA 1 cut(s) 174
TasI AATT 2 cut(s) 624, 832
TatI WGTACW 1 cut(s) 579
TauI GCSGC 2 cut(s) 171, 213
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 1 cut(s) 835
Tru9I TTAA 1 cut(s) 835
TseFI GTSAC 2 cut(s) 188, 799
TseI GCWGC 2 cut(s) 754, 772
Tsp45I GTSAC 2 cut(s) 188, 799
TspDTI ATGAA 3 cut(s) 46, 130, 334
TspGWI ACGGA 4 cut(s) 19, 176, 426, 805
VpaK11BI GGWCC 2 cut(s) 110, 325
XceI RCATGY 2 cut(s) 200, 586
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.