Rmu_co8329617.1_g000001

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8329617.1
OG0019934
Physical Location & Seq
Reverse (-)
2 .. 851
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8329617.1_g000001.1.cds

Sequence Viewer

Length: 850 bp
atggagaggaagagcgtccaccacaagatgaattcatcatcagcagaaaccgtagccaacatcgaagaactactacaacagatccttgtgcggctgccagctctatctgtgcttcgtttcaagtgcgtctccaagcactggctctctcttatctcaaccccccaattctgtcaccttcacaccctccaaaacccaaaccctaaaatctccggtttcttcgctagcagtacctactgctccactttcatccctcttcaaaaccaatctgggacgactaatccttttaacgctcttaatgatttcgtccatgctgacgacccagatacgttagggttagatattcttcagtcctgcaatggtctctttctctgccgccatagagttagtctctttctctgccaccatagagttgcagacttgagaaaacgtcatcccgtatatgttgtcaatcccacaaccaaccaattctcggttctttcctccccaagagttgggaaagatccattctttattctctatgctttggcttttgacccttccaaatcgcctcattacaaggtggtctgccttaatgaccaccaaatagacatatattcatctgagactcgagcttgggagcttctggagacttctttcaaaacagaagactggggcagtagtagggaaggcggagtatactgcaatggcgcagttcattggataagagaccacacaaagctggtggataggttggtaagagatgatagtgatgtgttgcactactatgttattggagaagatagtttgcgacttgccgtttctagtcctcctctggttgtaactgctccgtattcggattgcttcttgcgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

283

Amino Acids

32.13

Weight (kDa)

6.93

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019934)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0041051
rosa_laevigata RLG00000034021
rosa_multiflora Rmu_co8329617.1_g000001 Rmu_sc0002531.1_g000065
rosa_roxburghii Rroxscaffold_1G00039680
rosa_samantha Rh5AG275100 Rh5DG288200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 138, 491
AccI GTMKAC 1 cut(s) 675
AciI CCGC 4 cut(s) 91, 373, 669, 847
AclWI GGATC 2 cut(s) 76, 494
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 3 cut(s) 138, 469, 491
AgsI TTSAA 3 cut(s) 121, 257, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 4 cut(s) 101, 611, 619, 718
AluI AGCT 4 cut(s) 101, 611, 619, 718
Alw26I GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
AlwI GGATC 2 cut(s) 76, 494
Ama87I CYCGRG 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 689
AsuHPI GGTGA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 606
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 779
BcoDI GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
BfaI CTAG 2 cut(s) 222, 801
BisI GCNGC 3 cut(s) 92, 95, 373
BlsI GCNGC 3 cut(s) 93, 96, 374
BmeT110I CYCGRG 1 cut(s) 606
BmrI ACTGGG 1 cut(s) 658
BmtI GCTAGC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 439
BsaI GGTCTC 2 cut(s) 365, 699
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 469, 491
Bse1I ACTGG 2 cut(s) 143, 653
Bse3DI GCAATG 2 cut(s) 361, 688
BseGI GGATG 2 cut(s) 246, 430
BseLI CCNNNNNNNGG 3 cut(s) 138, 469, 491
BseMI GCAATG 2 cut(s) 361, 688
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 143, 653
BseRI GAGGAG 1 cut(s) 798
BseXI GCAGC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 138, 469, 491
BsmAI GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 283
Bso31I GGTCTC 2 cut(s) 365, 699
BsoBI CYCGRG 1 cut(s) 606
Bsp143I GATC 2 cut(s) 81, 499
BspACI CCGC 4 cut(s) 91, 373, 669, 847
BspCNI CTCAG 1 cut(s) 592
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 2 cut(s) 76, 494
BspQI GCTCTTC 1 cut(s) 5
BspTNI GGTCTC 2 cut(s) 365, 699
BsrDI GCAATG 2 cut(s) 361, 688
BsrI ACTGG 2 cut(s) 143, 653
BssMI GATC 2 cut(s) 81, 499
BssNAI GTATAC 1 cut(s) 676
Bst1107I GTATAC 1 cut(s) 676
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 5, 258
BstC8I GCNNGC 2 cut(s) 99, 223
BstDEI CTNAG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 246, 430
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 2 cut(s) 84, 502
BstMAI GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
BstMBI GATC 2 cut(s) 81, 499
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 2 cut(s) 81, 499
BstYI RGATCY 2 cut(s) 81, 499
BstZ17I GTATAC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 246, 430
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 99, 223
CfoI GCGC 1 cut(s) 689
CseI GACGC 2 cut(s) 4, 115
Csp6I GTAC 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 702, 737
CviAII CATG 1 cut(s) 308
CviJI RGCY 8 cut(s) 56, 94, 101, 142, 527, 611, 619, 718
CviKI_1 RGCY 8 cut(s) 56, 94, 101, 142, 527, 611, 619, 718
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 600
DpnI GATC 2 cut(s) 83, 501
DpnII GATC 2 cut(s) 81, 499
Eam1104I CTCTTC 2 cut(s) 5, 258
EarI CTCTTC 2 cut(s) 5, 258
EciI GGCGGA 1 cut(s) 684
Eco31I GGTCTC 2 cut(s) 365, 699
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 606
EcoRI GAATTC 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 1 cut(s) 311
FaqI GGGAC 1 cut(s) 283
FatI CATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 92, 95, 373
FokI GGATG 2 cut(s) 233, 417
Fsp4HI GCNGC 3 cut(s) 92, 95, 373
FspBI CTAG 2 cut(s) 222, 801
GlaI GCGC 1 cut(s) 688
GluI GCNGC 3 cut(s) 92, 95, 373
GsuI CTGGAG 1 cut(s) 644
HapII CCGG 1 cut(s) 210
HgaI GACGC 2 cut(s) 4, 115
HhaI GCGC 1 cut(s) 689
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HinfI GANTC 1 cut(s) 604
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 19, 676
Hpy188I TCNGA 2 cut(s) 601, 835
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 2 cut(s) 19, 676
HpyAV CCTTC 3 cut(s) 185, 546, 659
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 326, 427
HpyCH4V TGCA 4 cut(s) 354, 413, 681, 757
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 2 cut(s) 326, 427
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 687
Kzo9I GATC 2 cut(s) 81, 499
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 3 cut(s) 242, 616, 829
Lsp1109I GCAGC 1 cut(s) 81
MaeI CTAG 2 cut(s) 222, 801
MaeII ACGT 2 cut(s) 326, 427
MaeIII GTNAC 2 cut(s) 170, 817
MalI GATC 2 cut(s) 83, 501
MboI GATC 2 cut(s) 81, 499
MboII GAAGA 7 cut(s) 22, 77, 208, 245, 335, 656, 788
MflI RGATCY 2 cut(s) 81, 499
MluCI AATT 3 cut(s) 31, 164, 464
MlyI GAGTC 1 cut(s) 598
MnlI CCTC 6 cut(s) 194, 261, 490, 558, 816, 819
MseI TTAA 3 cut(s) 285, 294, 570
MslI CAYNNNNRTG 1 cut(s) 762
MspI CCGG 1 cut(s) 210
NdeII GATC 2 cut(s) 81, 499
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 5
PflMI CCANNNNNTGG 2 cut(s) 138, 491
PkrI GCNGC 3 cut(s) 93, 96, 374
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PspXI VCTCGAGB 1 cut(s) 606
PsuI RGATCY 2 cut(s) 81, 499
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 3 cut(s) 285, 294, 570
SatI GCNGC 3 cut(s) 92, 95, 373
Sau3AI GATC 2 cut(s) 81, 499
SchI GAGTC 1 cut(s) 598
Sfr274I CTCGAG 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 2 cut(s) 418, 606
SmoI CTYRAG 2 cut(s) 418, 606
Sse9I AATT 3 cut(s) 31, 164, 464
SsiI CCGC 4 cut(s) 91, 373, 669, 847
SspMI CTAG 2 cut(s) 222, 801
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 2 cut(s) 329, 430
TaqI TCGA 2 cut(s) 63, 607
TasI AATT 3 cut(s) 31, 164, 464
TauI GCSGC 2 cut(s) 94, 375
Tru1I TTAA 3 cut(s) 285, 294, 570
Tru9I TTAA 3 cut(s) 285, 294, 570
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 5 cut(s) 24, 44, 235, 585, 683
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 2 cut(s) 138, 491
XapI RAATTY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 2 cut(s) 222, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.