Rroxscaffold_1G00039680

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019934
Physical Location & Seq
Reverse (-)
57332963 .. 57334167
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039680.1

Sequence Viewer

Length: 1101 bp
ATGAATTCATCATCAGCAGCAGAAACCGTAGCCAACATCGAAGAATTGCTACAACAGATCCTTGTGCGGCTGCCAGCTCTATCTGTGCTTCGTTTCAAGACCTACTGCTCCACTTTCATCCCTCTTCAAAACCAATCTGGGACGACTAATCCTTTTAACGCTCTTAATGATTTCGTCCATGCTGACAACCCAGATACGTTAGGGTTAGGTATTCTTCAGTCCTGCAATGGTCTCTTTCTCTGCCACCATAGAGTTGCAGACTTGAGAAAACGTCATCCGGTATATGTTGTCAATCCCACAACCAACCAATTCTCGGTTCTTTCCTCCCCAAGAGTTGGGAAAGATCCATTCTTTATTCGCTATGCTTTGGCTTTTGACCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCCTTAATCACCACCAAATAGACATATATTCATCTGAGACTCGAGCTTGGAAGCTTCTGGAGACTTCTTTCAAAACAGAAGACTGGGGCAGGAGTAGGGGAGGCGGAGTATACTGCAATGGCGCAGTTCATTGGATAAGAAACCACACACAGCTGGTGAATTATAGGAGGGTAAGAGATGATAGTGATGTGTTGCACTACTATGTTATTGGAGAAGATAGTTTGCGACCTGCCGTTTCTAGTCCACCTCTGGTTGTAACTGCTCCGTATTCGGATTGCTTCTTGCGGATTCCAGATCATAGATATTTTGGGGAGTCTGGTGGCCATTTGTATTTGATTGATATTTATTGGGGTAGTAATAGTAATACTCAATTTTATGTGAAGGAGATGAGGAGGGACTACTCTGGCTGGTTTGTCAAGTACCATGTGGATCTTAATCCATTAATCTCATTCTCATGTCGTTTTTGGTTCTTGCTTCTTGGTGTAGTGGAAAATGATGAAGAAGATCAACACCGCCAGAATGAGGAGGAGGGTTCTTCTTCTCTTCTGTTGCATATTCCTGGTAAGGTCATACCTTACAGTCTTCGGAACAAGAGCTATAAGATATCTGTGGATTTACCCGAAGAGGACGAGCACTATTTTCTACCTAAAGAACATTGTCATGGTTACGTGGAGAGTTTAGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

366

Amino Acids

42.04

Weight (kDa)

6.3

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 50 - 184 1.3e-07 F-box associated beta propeller domain
FBA_1 PF07734 66 - 185 4.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019934)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0041051
rosa_laevigata RLG00000034021
rosa_multiflora Rmu_co8329617.1_g000001 Rmu_sc0002531.1_g000065
rosa_roxburghii Rroxscaffold_1G00039680
rosa_samantha Rh5AG275100 Rh5DG288200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB7I CCANNNNNTGG 1 cut(s) 335
AccI GTMKAC 1 cut(s) 519
AciI CCGC 4 cut(s) 67, 513, 694, 922
AclWI GGATC 3 cut(s) 52, 338, 846
AcoI YGGCCR 1 cut(s) 730
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 830
AfiI CCNNNNNNNGG 3 cut(s) 313, 335, 931
AgsI TTSAA 3 cut(s) 97, 128, 481
AjnI CCWGG 1 cut(s) 967
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 6 cut(s) 77, 455, 463, 562, 1005, 1091
AluI AGCT 6 cut(s) 77, 455, 463, 562, 1005, 1091
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 3 cut(s) 236, 440, 464
AlwI GGATC 3 cut(s) 52, 338, 846
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 2 cut(s) 17, 70
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 851
AspLEI GCGC 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 410, 577
AvaI CYCGRG 1 cut(s) 450
BalI TGGCCA 1 cut(s) 732
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbsI GAAGAC 2 cut(s) 495, 983
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 2 cut(s) 29, 57
BceAI ACGGC 1 cut(s) 626
BciT130I CCWGG 1 cut(s) 969
BcoDI GTCTC 3 cut(s) 236, 440, 464
BfaI CTAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 646
BisI GCNGC 3 cut(s) 18, 68, 71
BlsI GCNGC 3 cut(s) 19, 69, 72
Bme1390I CCNGG 1 cut(s) 969
BmeT110I CYCGRG 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 969
BmrI ACTGGG 1 cut(s) 502
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 2 cut(s) 495, 983
BpmI CTGGAG 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 283
BsaAI YACGTR 1 cut(s) 1078
BsaBI GATNNNNATC 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 335, 931
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 2 cut(s) 232, 532
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 1 cut(s) 969
BseGI GGATG 2 cut(s) 117, 274
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 313, 335, 931
BseMI GCAATG 2 cut(s) 232, 532
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 3 cut(s) 814, 947, 950
BseXI GCAGC 2 cut(s) 29, 57
BshFI GGCC 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 1044
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 2 cut(s) 154, 818
BslI CCNNNNNNNGG 3 cut(s) 313, 335, 931
BsmAI GTCTC 3 cut(s) 236, 440, 464
BsmFI GGGAC 2 cut(s) 154, 818
BsnI GGCC 1 cut(s) 732
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp143I GATC 5 cut(s) 57, 343, 703, 838, 913
BspACI CCGC 4 cut(s) 67, 513, 694, 922
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 3 cut(s) 52, 338, 846
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 232, 532
BsrI ACTGG 1 cut(s) 497
BssMI GATC 5 cut(s) 57, 343, 703, 838, 913
BssNAI GTATAC 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 2 cut(s) 28, 989
Bst6I CTCTTC 3 cut(s) 129, 957, 1026
BstBAI YACGTR 1 cut(s) 1078
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 117, 274
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 5 cut(s) 60, 346, 706, 841, 916
BstMAI GTCTC 3 cut(s) 236, 440, 464
BstMBI GATC 5 cut(s) 57, 343, 703, 838, 913
BstNI CCWGG 1 cut(s) 969
BstSCI CCNGG 1 cut(s) 967
BstV1I GCAGC 2 cut(s) 29, 57
BstV2I GAAGAC 2 cut(s) 495, 983
BstX2I RGATCY 3 cut(s) 57, 343, 838
BstYI RGATCY 3 cut(s) 57, 343, 838
BstZ17I GTATAC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 732
BtsCI GGATG 2 cut(s) 117, 274
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 533
Csp6I GTAC 1 cut(s) 829
CviAII CATG 4 cut(s) 179, 833, 864, 1070
CviQI GTAC 1 cut(s) 829
DdeI CTNAG 1 cut(s) 444
DpnI GATC 5 cut(s) 59, 345, 705, 840, 915
DpnII GATC 5 cut(s) 57, 343, 703, 838, 913
EaeI YGGCCR 1 cut(s) 730
Eam1104I CTCTTC 3 cut(s) 129, 957, 1026
EarI CTCTTC 3 cut(s) 129, 957, 1026
EciI GGCGGA 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 236
Eco32I GATATC 1 cut(s) 1014
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 450
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 967
EcoRV GATATC 1 cut(s) 1014
FaeI CATG 4 cut(s) 182, 836, 867, 1073
FaqI GGGAC 2 cut(s) 154, 818
FatI CATG 4 cut(s) 178, 832, 863, 1069
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 3 cut(s) 18, 68, 71
FokI GGATG 2 cut(s) 104, 261
Fsp4HI GCNGC 3 cut(s) 18, 68, 71
FspBI CTAG 1 cut(s) 648
GlaI GCGC 1 cut(s) 532
GluI GCNGC 3 cut(s) 18, 68, 71
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 1 cut(s) 732
HapII CCGG 1 cut(s) 278
HhaI GCGC 1 cut(s) 533
Hin1II CATG 4 cut(s) 182, 836, 867, 1073
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 448, 697, 722
HpaII CCGG 1 cut(s) 278
HphI GGTGA 2 cut(s) 410, 577
Hpy166II GTNNAC 2 cut(s) 520, 653
Hpy188I TCNGA 3 cut(s) 445, 682, 996
Hpy188III TCNNGA 3 cut(s) 97, 467, 701
Hpy8I GTNNAC 2 cut(s) 520, 653
HpyAV CCTTC 2 cut(s) 390, 784
HpyCH4III ACNGT 2 cut(s) 28, 989
HpyCH4IV ACGT 3 cut(s) 197, 271, 1077
HpyCH4V TGCA 5 cut(s) 225, 257, 525, 604, 961
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 3 cut(s) 197, 271, 1077
Hsp92II CATG 4 cut(s) 182, 836, 867, 1073
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 5 cut(s) 57, 343, 703, 838, 913
LmnI GCTCC 2 cut(s) 113, 676
Lsp1109I GCAGC 2 cut(s) 29, 57
MaeI CTAG 1 cut(s) 648
MaeII ACGT 3 cut(s) 197, 271, 1077
MaeIII GTNAC 2 cut(s) 664, 1073
MalI GATC 5 cut(s) 59, 345, 705, 840, 915
MboI GATC 5 cut(s) 57, 343, 703, 838, 913
MflI RGATCY 3 cut(s) 57, 343, 838
MhlI GDGCHC 1 cut(s) 1044
MlsI TGGCCA 1 cut(s) 732
MluCI AATT 5 cut(s) 4, 44, 308, 568, 779
MluNI TGGCCA 1 cut(s) 732
MlyI GAGTC 2 cut(s) 442, 731
Mox20I TGGCCA 1 cut(s) 732
MscI TGGCCA 1 cut(s) 732
MseI TTAA 5 cut(s) 156, 165, 414, 843, 851
MslI CAYNNNNRTG 3 cut(s) 609, 862, 1068
Msp20I TGGCCA 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 562
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 969
MvaI CCWGG 1 cut(s) 969
NdeII GATC 5 cut(s) 57, 343, 703, 838, 913
NlaIII CATG 4 cut(s) 182, 836, 867, 1073
PaeR7I CTCGAG 1 cut(s) 450
PfeI GAWTC 1 cut(s) 697
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 3 cut(s) 19, 69, 72
PleI GAGTC 2 cut(s) 442, 730
PpsI GAGTC 2 cut(s) 442, 730
Ppu21I YACGTR 1 cut(s) 1078
PshBI ATTAAT 1 cut(s) 851
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspXI VCTCGAGB 1 cut(s) 450
PsuI RGATCY 3 cut(s) 57, 343, 838
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 830
RsaNI GTAC 1 cut(s) 829
RseI CAYNNNNRTG 3 cut(s) 609, 862, 1068
SaqAI TTAA 5 cut(s) 156, 165, 414, 843, 851
SatI GCNGC 3 cut(s) 18, 68, 71
Sau3AI GATC 5 cut(s) 57, 343, 703, 838, 913
SchI GAGTC 2 cut(s) 442, 731
ScrFI CCNGG 1 cut(s) 969
SduI GDGCHC 1 cut(s) 1044
Sfr274I CTCGAG 1 cut(s) 450
SlaI CTCGAG 1 cut(s) 450
SmiMI CAYNNNNRTG 3 cut(s) 609, 862, 1068
SmlI CTYRAG 2 cut(s) 262, 450
SmoI CTYRAG 2 cut(s) 262, 450
Sse9I AATT 5 cut(s) 4, 44, 308, 568, 779
SsiI CCGC 4 cut(s) 67, 513, 694, 922
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 1 cut(s) 967
TaaI ACNGT 2 cut(s) 28, 989
TaiI ACGT 3 cut(s) 200, 274, 1080
TaqI TCGA 2 cut(s) 39, 451
TasI AATT 5 cut(s) 4, 44, 308, 568, 779
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 5 cut(s) 156, 165, 414, 843, 851
Tru9I TTAA 5 cut(s) 156, 165, 414, 843, 851
TseI GCWGC 2 cut(s) 17, 70
TspDTI ATGAA 5 cut(s) 17, 106, 429, 527, 921
TspGWI ACGGA 1 cut(s) 663
Van91I CCANNNNNTGG 1 cut(s) 335
VspI ATTAAT 1 cut(s) 851
XapI RAATTY 1 cut(s) 4
XhoI CTCGAG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.