Rmu_sc0002531.1_g000065

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002531.1
OG0019934
Physical Location & Seq
Reverse (-)
317268 .. 318521
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002531.1_g000065.1.cds

Sequence Viewer

Length: 1254 bp
atggagaggaagagcgtccaccacaagatgaattcatcatcagcagaaaccgtagccaacatcgaagaactgctacaacagatccttgtgcggctgccagctctatctgtgcttcgtttcaagtgcgtctccaagcactggctctctcttatctcaaccccccaattctgtcaccttcacaccctccaaaacccaaaccctaaaatctccggtttcttcgctagcagtacctactgctccactttcatccctcttcaaaaccaatctgggacgactaatccttttaacgctcttaatgatttcgtccatgctgacgacccagatacgttagggttagatattcttcagtcctgcaatggtctctttctctgccgccatagagttagtctctttctctgccaccatagagttgcagacttgagaaaacgtcatcccgtatatgttgtcaatcccacaaccaaccaattctcggttctttcctccccaagagttgggaaagatccattctttattctctatgctttggcttttgacccttccaaatcgcctcattacaaggtggtctgccttaatgaccaccaaatagacatatattcatctgagactcgagcttgggagcttctggagacttctttcaaaacagaagactggggcagtagtagggaaggcggagtatactgcaatggcgcagttcattggataagagaccacacaaagctggtggataggttggtaagagatgatagtgatgtgttgcactactatgttattggagaagatagtttgcgacttgccgtttctagtcctcctctggttgtaactgctccgtattcggattgcttcttgcggattccagatcatagatattttggggagtctggtggccatttatgtttgattgatatttattggggtcgtaatagtaatactcaattttatgtgaaggagatgaggagggactactctggctggtttgtcaagtaccatgtggatcttaatccgtttatctcattctcacgtcgtttttggttcttgcttcttggtgtagtggaaaatgatgaagaagatcagcaccaccaaaatgaggaggagggttcttcttctcttgtgttgcatattcctggtaaggtcataccttatagtcttcggaacaagagctataagacatctgtggatttaccagaagaggaccagcactattttctacgtaaagaacattgtcatggttacgtggagagtttagcttgtgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

417

Amino Acids

48.04

Weight (kDa)

6.38

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019934)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0041051
rosa_laevigata RLG00000034021
rosa_multiflora Rmu_co8329617.1_g000001 Rmu_sc0002531.1_g000065
rosa_roxburghii Rroxscaffold_1G00039680
rosa_samantha Rh5AG275100 Rh5DG288200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 138, 491
AccI GTMKAC 1 cut(s) 675
AciI CCGC 4 cut(s) 91, 373, 669, 847
AclWI GGATC 3 cut(s) 76, 494, 999
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 229, 983
AfiI CCNNNNNNNGG 4 cut(s) 138, 469, 491, 1084
AgsI TTSAA 3 cut(s) 121, 257, 637
AjiI CACGTC 1 cut(s) 1019
AjnI CCWGG 1 cut(s) 1120
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 6 cut(s) 101, 611, 619, 718, 1158, 1244
AluI AGCT 6 cut(s) 101, 611, 619, 718, 1158, 1244
Alw26I GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
AlwI GGATC 3 cut(s) 76, 494, 999
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 1 cut(s) 883
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 1189
AsuHPI GGTGA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 1189
BalI TGGCCA 1 cut(s) 885
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 2 cut(s) 651, 1136
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 779
BciT130I CCWGG 1 cut(s) 1122
BcoDI GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
BfaI CTAG 2 cut(s) 222, 801
BisI GCNGC 3 cut(s) 92, 95, 373
BlsI GCNGC 3 cut(s) 93, 96, 374
Bme1390I CCNGG 1 cut(s) 1122
Bme18I GGWCC 1 cut(s) 1189
BmeT110I CYCGRG 1 cut(s) 606
BmgBI CACGTC 1 cut(s) 1019
BmgT120I GGNCC 1 cut(s) 1189
BmrFI CCNGG 1 cut(s) 1122
BmrI ACTGGG 1 cut(s) 658
BmtI GCTAGC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 2 cut(s) 651, 1136
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 439
BsaAI YACGTR 2 cut(s) 1208, 1231
BsaBI GATNNNNATC 1 cut(s) 996
BsaI GGTCTC 2 cut(s) 365, 699
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 469, 491, 1084
Bse1I ACTGG 2 cut(s) 143, 653
Bse3DI GCAATG 2 cut(s) 361, 688
Bse8I GATNNNNATC 1 cut(s) 996
BseBI CCWGG 1 cut(s) 1122
BseGI GGATG 2 cut(s) 246, 430
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 4 cut(s) 138, 469, 491, 1084
BseMI GCAATG 2 cut(s) 361, 688
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 143, 653
BseRI GAGGAG 4 cut(s) 798, 967, 1100, 1103
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 885
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 2 cut(s) 283, 971
BslI CCNNNNNNNGG 4 cut(s) 138, 469, 491, 1084
BsmAI GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 283, 971
BsnI GGCC 1 cut(s) 885
Bso31I GGTCTC 2 cut(s) 365, 699
BsoBI CYCGRG 1 cut(s) 606
Bsp143I GATC 5 cut(s) 81, 499, 856, 991, 1066
BspACI CCGC 4 cut(s) 91, 373, 669, 847
BspANI GGCC 1 cut(s) 885
BspCNI CTCAG 1 cut(s) 592
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 3 cut(s) 76, 494, 999
BspQI GCTCTTC 1 cut(s) 5
BspTNI GGTCTC 2 cut(s) 365, 699
BsrDI GCAATG 2 cut(s) 361, 688
BsrI ACTGG 2 cut(s) 143, 653
BssMI GATC 5 cut(s) 81, 499, 856, 991, 1066
BssNAI GTATAC 1 cut(s) 676
Bst1107I GTATAC 1 cut(s) 676
Bst2UI CCWGG 1 cut(s) 1122
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 3 cut(s) 5, 258, 1179
BstBAI YACGTR 2 cut(s) 1208, 1231
BstC8I GCNNGC 2 cut(s) 99, 223
BstDEI CTNAG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 246, 430
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 5 cut(s) 84, 502, 859, 994, 1069
BstMAI GTCTC 6 cut(s) 133, 365, 392, 596, 620, 699
BstMBI GATC 5 cut(s) 81, 499, 856, 991, 1066
BstNI CCWGG 1 cut(s) 1122
BstSCI CCNGG 1 cut(s) 1120
BstSNI TACGTA 1 cut(s) 1208
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 2 cut(s) 651, 1136
BstX2I RGATCY 3 cut(s) 81, 499, 991
BstYI RGATCY 3 cut(s) 81, 499, 991
BstZ17I GTATAC 1 cut(s) 676
BsuRI GGCC 1 cut(s) 885
BtrI CACGTC 1 cut(s) 1019
BtsCI GGATG 2 cut(s) 246, 430
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 99, 223
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 1189
CseI GACGC 2 cut(s) 4, 115
Csp6I GTAC 2 cut(s) 228, 982
CspCI CAANNNNNGTGG 2 cut(s) 702, 737
CviAII CATG 3 cut(s) 308, 986, 1223
CviQI GTAC 2 cut(s) 228, 982
DdeI CTNAG 1 cut(s) 600
DpnI GATC 5 cut(s) 83, 501, 858, 993, 1068
DpnII GATC 5 cut(s) 81, 499, 856, 991, 1066
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 3 cut(s) 5, 258, 1179
EarI CTCTTC 3 cut(s) 5, 258, 1179
EciI GGCGGA 1 cut(s) 684
Eco105I TACGTA 1 cut(s) 1208
Eco31I GGTCTC 2 cut(s) 365, 699
Eco47I GGWCC 1 cut(s) 1189
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 606
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 1120
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 3 cut(s) 311, 989, 1226
FaqI GGGAC 2 cut(s) 283, 971
FatI CATG 3 cut(s) 307, 985, 1222
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 92, 95, 373
FokI GGATG 2 cut(s) 233, 417
Fsp4HI GCNGC 3 cut(s) 92, 95, 373
FspBI CTAG 2 cut(s) 222, 801
GlaI GCGC 1 cut(s) 688
GluI GCNGC 3 cut(s) 92, 95, 373
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 1 cut(s) 885
HapII CCGG 1 cut(s) 210
HgaI GACGC 2 cut(s) 4, 115
HhaI GCGC 1 cut(s) 689
Hin1II CATG 3 cut(s) 311, 989, 1226
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HinfI GANTC 3 cut(s) 604, 850, 875
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 19, 676
Hpy188I TCNGA 3 cut(s) 601, 835, 1149
Hpy188III TCNNGA 2 cut(s) 623, 854
Hpy8I GTNNAC 2 cut(s) 19, 676
Hpy99I CGWCG 1 cut(s) 1023
HpyAV CCTTC 4 cut(s) 185, 546, 659, 937
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 5 cut(s) 326, 427, 1018, 1207, 1230
HpyCH4V TGCA 5 cut(s) 354, 413, 681, 757, 1114
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 5 cut(s) 326, 427, 1018, 1207, 1230
Hsp92II CATG 3 cut(s) 311, 989, 1226
HspAI GCGC 1 cut(s) 687
Kzo9I GATC 5 cut(s) 81, 499, 856, 991, 1066
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 3 cut(s) 242, 616, 829
Lsp1109I GCAGC 1 cut(s) 81
MaeI CTAG 2 cut(s) 222, 801
MaeII ACGT 5 cut(s) 326, 427, 1018, 1207, 1230
MaeIII GTNAC 3 cut(s) 170, 817, 1226
MalI GATC 5 cut(s) 83, 501, 858, 993, 1068
MboI GATC 5 cut(s) 81, 499, 856, 991, 1066
MflI RGATCY 3 cut(s) 81, 499, 991
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 4 cut(s) 31, 164, 464, 932
MluNI TGGCCA 1 cut(s) 885
MlyI GAGTC 2 cut(s) 598, 884
Mox20I TGGCCA 1 cut(s) 885
MscI TGGCCA 1 cut(s) 885
MseI TTAA 4 cut(s) 285, 294, 570, 996
MslI CAYNNNNRTG 3 cut(s) 762, 1080, 1221
Msp20I TGGCCA 1 cut(s) 885
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 1122
MvaI CCWGG 1 cut(s) 1122
NdeII GATC 5 cut(s) 81, 499, 856, 991, 1066
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 311, 989, 1226
NmuCI GTSAC 1 cut(s) 170
PaeR7I CTCGAG 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 850
PflMI CCANNNNNTGG 2 cut(s) 138, 491
PkrI GCNGC 3 cut(s) 93, 96, 374
PleI GAGTC 2 cut(s) 598, 883
PpsI GAGTC 2 cut(s) 598, 883
Ppu21I YACGTR 2 cut(s) 1208, 1231
Psp6I CCWGG 1 cut(s) 1120
PspGI CCWGG 1 cut(s) 1120
PspPI GGNCC 1 cut(s) 1189
PspXI VCTCGAGB 1 cut(s) 606
PsuI RGATCY 3 cut(s) 81, 499, 991
RsaI GTAC 2 cut(s) 229, 983
RsaNI GTAC 2 cut(s) 228, 982
RseI CAYNNNNRTG 3 cut(s) 762, 1080, 1221
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 4 cut(s) 285, 294, 570, 996
SatI GCNGC 3 cut(s) 92, 95, 373
Sau3AI GATC 5 cut(s) 81, 499, 856, 991, 1066
Sau96I GGNCC 1 cut(s) 1189
SchI GAGTC 2 cut(s) 598, 884
ScrFI CCNGG 1 cut(s) 1122
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 1 cut(s) 1189
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 3 cut(s) 762, 1080, 1221
SmlI CTYRAG 2 cut(s) 418, 606
SmoI CTYRAG 2 cut(s) 418, 606
SnaBI TACGTA 1 cut(s) 1208
Sse9I AATT 4 cut(s) 31, 164, 464, 932
SsiI CCGC 4 cut(s) 91, 373, 669, 847
SspMI CTAG 2 cut(s) 222, 801
StyD4I CCNGG 1 cut(s) 1120
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 5 cut(s) 329, 430, 1021, 1210, 1233
TaqI TCGA 2 cut(s) 63, 607
TasI AATT 4 cut(s) 31, 164, 464, 932
TauI GCSGC 2 cut(s) 94, 375
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 4 cut(s) 285, 294, 570, 996
Tru9I TTAA 4 cut(s) 285, 294, 570, 996
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 6 cut(s) 24, 44, 235, 585, 683, 1074
TspGWI ACGGA 2 cut(s) 816, 990
TspRI CASTG 1 cut(s) 143
Van91I CCANNNNNTGG 2 cut(s) 138, 491
VpaK11BI GGWCC 1 cut(s) 1189
XapI RAATTY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 2 cut(s) 222, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.