Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338923.1

Orthogroup ID

OG0008299

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1001

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1000 bp

gtcaataggtcctgtggttctgatagggttactgcccttcactgtgccactgctggcggttcctcttcttcgcttgaggttgtcaagctcttgcttgatgcatctgctgatgctaattgtgtcaccgctaatggaaacaagcctgttgacttgattgcccctgctttgaagtctccttgcaactcaagaagaaaggccatggagatgttgttgaaaggcgatatgtcacttttgggaagtgatattgatgatcaagaggttccaagccttcagttgctgaaagagggaagcgagaagaaagaatatcctattgatattgcattgccagatatcaacaatgggatttatggttcagatgagttcagaatgtacactttcaaggtgaagccgtgctccagggcctactctcatgactggaccgagtgcccttttgttcaccccggtgagaatgcaaggaggagagacccaaggaagtatccatacagctgtgtcccctgccctgagttccgcaaaggctcatgccagaagggagatgtctgtgaatatgctcatggtgttttcgagtcctggcttcatcctgctcaataccgcactcgcctttgcaaggacgaaactggatgcacaaggaaggtgtgcttctttgctcacaaacctgaagagttgcgcccagtgtatgtttccacgggttcagccatgccttcacctaggtctatgtcagccagcgctggagatatgacaaccatgagcccattagctcttggttcaccatctctgtctatgcctaccgcatcaacaccacccatgtctccaattgcagcctcttctcctaagaatggaggtctgtggcagaacaaggttaacctcaccccacctgccttgcagcttccaggtagcaggctaaagagtgcttcaagcgctcgtgatttggacttggagatggaatttctagggcgtgataatcatgctaaccaacaacagcagcaacagcaacagcaacagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 zf-CCCH

Protein Analysis

333

Amino Acids

36.42

Weight (kDa)

7.95

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40140 AT2G40140 AT3G55980 AT3G55980
fragaria_vesca	FvH4_7g24560
malus_domestica	MD01G1154000.v1.1 MD07G1222900.v1.1
prunus_persica	Prupe.2G251000_v2.0.a1 Prupe.2G251000_v2.0.a1
pyrus_communis	pycom01g17130 pycom07g20150
rosa_chinensis	RchiOBHm_Chr1g0370401
rosa_laevigata	RLG00000027051
rosa_multiflora	Rmu_co8338923.1_g000001 Rmu_sc0005656.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286610
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364600 Rh1BG327800 Rh1CG340800 Rh1DG358100
rosa_wichuraiana	Rw1G032080 Rw1G032130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	880
Acc36I	ACCTGC	1 cut(s)	880
AciI	CCGC	5 cut(s)	57, 126, 508, 589, 786
AcsI	RAATTY	1 cut(s)	941
AcuI	CTGAAG	2 cut(s)	254, 675
AfaI	GTAC	1 cut(s)	371
AfeI	AGCGCT	2 cut(s)	724, 916
AfiI	CCNNNNNNNGG	2 cut(s)	604, 833
AgsI	TTSAA	4 cut(s)	169, 214, 379, 912
AjnI	CCWGG	3 cut(s)	395, 566, 886
AleI	CACNNNNGTG	1 cut(s)	441
AloI	GAACNNNNNNTCC	2 cut(s)	334, 366
AluBI	AGCT	4 cut(s)	88, 486, 755, 883
AluI	AGCT	4 cut(s)	88, 486, 755, 883
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	3 cut(s)	177, 456, 810
AlwNI	CAGNNNCTG	1 cut(s)	277
Aor51HI	AGCGCT	2 cut(s)	724, 916
AoxI	GGCC	2 cut(s)	195, 399
ApeKI	GCWGC	3 cut(s)	815, 880, 979
ApoI	RAATTY	1 cut(s)	941
AspA2I	CCTAGG	1 cut(s)	704
AspLEI	GCGC	3 cut(s)	666, 725, 917
AspS9I	GGNCC	3 cut(s)	9, 399, 417
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	7 cut(s)	115, 394, 428, 455, 693, 756, 856
AvaII	GGWCC	2 cut(s)	9, 417
AvrII	CCTAGG	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	749
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
BauI	CACGAG	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	827, 892, 991
BccI	CCATC	2 cut(s)	775, 931
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	3 cut(s)	397, 568, 888
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	177, 456, 810
BfaI	CTAG	2 cut(s)	705, 947
BfoI	RGCGCY	2 cut(s)	726, 918
BfuAI	ACCTGC	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	486
BisI	GCNGC	3 cut(s)	816, 881, 980
BlnI	CCTAGG	1 cut(s)	704
BlsI	GCNGC	3 cut(s)	817, 882, 981
Bme1390I	CCNGG	4 cut(s)	397, 441, 568, 888
Bme18I	GGWCC	2 cut(s)	9, 417
BmgT120I	GGNCC	3 cut(s)	9, 399, 417
BmiI	GGNNCC	2 cut(s)	61, 261
BmrFI	CCNGG	4 cut(s)	397, 441, 568, 888
BmrI	ACTGGG	1 cut(s)	662
BmsI	GCATC	5 cut(s)	88, 100, 110, 608, 797
BmuI	ACTGGG	1 cut(s)	662
BpmI	CTGGAG	2 cut(s)	379, 747
BpuEI	CTTGAG	2 cut(s)	95, 169
BpuMI	CCSGG	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	6 cut(s)	198, 396, 439, 467, 681, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 833
Bse1I	ACTGG	3 cut(s)	419, 619, 668
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	397, 568, 888
BseDI	CCNNGG	6 cut(s)	198, 396, 439, 467, 681, 704
BseGI	GGATG	2 cut(s)	574, 623
BseLI	CCNNNNNNNGG	2 cut(s)	604, 833
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	3 cut(s)	419, 619, 668
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	3 cut(s)	827, 892, 991
BshFI	GGCC	2 cut(s)	197, 401
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	604, 833
BsmAI	GTCTC	3 cut(s)	177, 456, 810
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	197, 401
Bso31I	GGTCTC	1 cut(s)	456
Bsp1286I	GDGCHC	3 cut(s)	395, 428, 749
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	5 cut(s)	57, 126, 508, 589, 786
BspANI	GGCC	2 cut(s)	197, 401
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	61, 261
BspMI	ACCTGC	1 cut(s)	880
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	419, 619, 668
BssECI	CCNNGG	6 cut(s)	198, 396, 439, 467, 681, 704
BssMI	GATC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	3 cut(s)	198, 467, 704
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	3 cut(s)	397, 568, 888
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	3 cut(s)	70, 651, 826
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	55, 721, 896
BstDEI	CTNAG	2 cut(s)	501, 828
BstDSI	CCRYGG	2 cut(s)	198, 681
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	574, 623
BstH2I	RGCGCY	2 cut(s)	726, 918
BstHHI	GCGC	3 cut(s)	666, 725, 917
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	3 cut(s)	177, 456, 810
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	914, 985
BstNI	CCWGG	3 cut(s)	397, 568, 888
BstSCI	CCNGG	4 cut(s)	395, 439, 566, 886
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	3 cut(s)	827, 892, 991
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	197, 401
BtgI	CCRYGG	2 cut(s)	198, 681
BtsCI	GGATG	2 cut(s)	574, 623
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	40, 48, 675
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	55, 721, 896
CaiI	CAGNNNCTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	3 cut(s)	666, 725, 917
Cfr13I	GGNCC	3 cut(s)	9, 399, 417
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	858, 893
CviAII	CATG	8 cut(s)	199, 410, 519, 551, 694, 742, 802, 962
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	501, 828
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	3 cut(s)	70, 651, 826
EarI	CTCTTC	3 cut(s)	70, 651, 826
Eco130I	CCWWGG	3 cut(s)	198, 467, 704
Eco24I	GRGCYC	1 cut(s)	749
Eco31I	GGTCTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	9, 417
Eco47III	AGCGCT	2 cut(s)	724, 916
Eco57I	CTGAAG	2 cut(s)	254, 675
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoO109I	RGGNCCY	2 cut(s)	9, 399
EcoRII	CCWGG	3 cut(s)	395, 566, 886
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	3 cut(s)	198, 467, 704
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	749
ErhI	CCWWGG	3 cut(s)	198, 467, 704
FaeI	CATG	8 cut(s)	202, 413, 522, 554, 697, 745, 805, 965
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	8 cut(s)	198, 409, 518, 550, 693, 741, 801, 961
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	816, 881, 980
FokI	GGATG	2 cut(s)	561, 630
FriOI	GRGCYC	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	816, 881, 980
FspBI	CTAG	2 cut(s)	705, 947
GlaI	GCGC	3 cut(s)	665, 724, 916
GluI	GCNGC	3 cut(s)	816, 881, 980
GsuI	CTGGAG	2 cut(s)	379, 747
HaeII	RGCGCY	2 cut(s)	726, 918
HaeIII	GGCC	2 cut(s)	197, 401
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	3 cut(s)	666, 725, 917
Hin1II	CATG	8 cut(s)	202, 413, 522, 554, 697, 745, 805, 965
Hin6I	GCGC	3 cut(s)	664, 723, 915
HinP1I	GCGC	3 cut(s)	664, 723, 915
HincII	GTYRAC	2 cut(s)	148, 859
HindII	GTYRAC	2 cut(s)	148, 859
HinfI	GANTC	1 cut(s)	563
HpaI	GTTAAC	1 cut(s)	859
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	7 cut(s)	115, 394, 428, 455, 693, 756, 856
Hpy166II	GTNNAC	5 cut(s)	148, 372, 436, 764, 859
Hpy188I	TCNGA	3 cut(s)	22, 355, 365
Hpy188III	TCNNGA	4 cut(s)	186, 254, 410, 920
Hpy8I	GTNNAC	5 cut(s)	148, 372, 436, 764, 859
HpyAV	CCTTC	5 cut(s)	47, 278, 520, 622, 708
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	8 cut(s)	101, 180, 320, 452, 603, 621, 815, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	914, 985
HpyF3I	CTNAG	2 cut(s)	501, 828
Hsp92II	CATG	8 cut(s)	202, 413, 522, 554, 697, 745, 805, 965
HspAI	GCGC	3 cut(s)	664, 723, 915
Ksp22I	TGATCA	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	859
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	3 cut(s)	827, 892, 991
LweI	GCATC	5 cut(s)	88, 100, 110, 608, 797
MaeI	CTAG	2 cut(s)	705, 947
MaeIII	GTNAC	3 cut(s)	28, 121, 225
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	6 cut(s)	57, 60, 201, 307, 668, 813
MfeI	CAATTG	1 cut(s)	810
MhlI	GDGCHC	3 cut(s)	395, 428, 749
MluCI	AATT	3 cut(s)	115, 810, 941
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	8 cut(s)	70, 73, 250, 277, 450, 829, 830, 872
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	1 cut(s)	858
MslI	CAYNNNNRTG	2 cut(s)	203, 441
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	4 cut(s)	397, 441, 568, 888
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	3 cut(s)	397, 568, 888
MwoI	GCNNNNNNNGC	2 cut(s)	914, 985
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	8 cut(s)	202, 413, 522, 554, 697, 745, 805, 965
NlaIV	GGNNCC	2 cut(s)	61, 261
NmuCI	GTSAC	2 cut(s)	121, 225
NsiI	ATGCAT	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	441
PagI	TCATGA	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	880
PctI	GAATGC	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	817, 882, 981
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	395, 566, 886
PspGI	CCWGG	3 cut(s)	395, 566, 886
PspN4I	GGNNCC	2 cut(s)	61, 261
PspPI	GGNCC	3 cut(s)	9, 399, 417
PspPPI	RGGWCCY	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	203, 441
SaqAI	TTAA	1 cut(s)	858
SatI	GCNGC	3 cut(s)	816, 881, 980
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	3 cut(s)	9, 399, 417
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	397, 441, 568, 888
SduI	GDGCHC	3 cut(s)	395, 428, 749
SfaNI	GCATC	5 cut(s)	88, 100, 110, 608, 797
SinI	GGWCC	2 cut(s)	9, 417
SmiMI	CAYNNNNRTG	2 cut(s)	203, 441
SmlI	CTYRAG	2 cut(s)	74, 184
SmoI	CTYRAG	2 cut(s)	74, 184
Sse9I	AATT	3 cut(s)	115, 810, 941
SsiI	CCGC	5 cut(s)	57, 126, 508, 589, 786
SspMI	CTAG	2 cut(s)	705, 947
StyD4I	CCNGG	4 cut(s)	395, 439, 566, 886
StyI	CCWWGG	3 cut(s)	198, 467, 704
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	561
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	115, 810, 941
TatI	WGTACW	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	3 cut(s)	47, 55, 675
TseFI	GTSAC	2 cut(s)	121, 225
TseI	GCWGC	3 cut(s)	815, 880, 979
Tsp45I	GTSAC	2 cut(s)	121, 225
TspDTI	ATGAA	1 cut(s)	563
TspRI	CASTG	3 cut(s)	47, 55, 675
VpaK11BI	GGWCC	2 cut(s)	9, 417
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	1 cut(s)	941
XmaJI	CCTAGG	1 cut(s)	704
XspI	CTAG	2 cut(s)	705, 947
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.