Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347013.1

Orthogroup ID

OG0008328

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1028

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347013.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 596 bp

aagatttttaccgagtatgtgtccaccagaaaagcgaaaaaaccgtgccgtgaagaggacggcagtgaaggtaggtgctctgccagaagtgaggacggtgagtacaactatccatttgactctgattcacttgacgattgtgaagaaggtgaatcagatgatgtcaaagatgattccagtgtcaggaagtcattcagttatggcacactggcccatgcaaattatgctggaagaacaatatactccaatatgagaatcaatggcgaaggtgaggattgggtttattacagcaatcgcaaatcagatgtggggtgctcacaggccgaggactcatctgtatcagtctctgagccatctgctagttcaaagcggggcttactaccctggaggaagagaaagctgagcttcattcggtctcctaaagctaaaggagaaccattgttaaagaaggcttatggtgaagaaggtggtgatgacattgattttgatcgtcggcagcttagctctgatgaatgtctatctctcgggtggcagaagacagaggaggattcatctgctaatcggtcatcagtttcagaatttggggatgataattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

198

Amino Acids

22.15

Weight (kDa)

4.76

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11760
fragaria_vesca	FvH4_6g20670 FvH4_6g20670 FvH4_6g20670 FvH4_6g20670 FvH4_6g20670
malus_domestica	MD12G1043000.v1.1 MD14G1041900.v1.1
prunus_persica	Prupe.7G091900_v2.0.a1 Prupe.7G091900_v2.0.a1
pyrus_communis	pycom12g03710
rosa_chinensis	RchiOBHm_Chr3g0476551
rosa_laevigata	RLG00000023762
rosa_multiflora	Rmu_co8347013.1_g000001 Rmu_sc0004556.1_g000001 Rmu_sc0033898.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405230
rosa_rugosa	Rorug03G0154800
rosa_samantha	Rh3AG205900 Rh3BG238300 Rh3CG232100 Rh3DG232000
rosa_wichuraiana	Rw3G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	55, 183
AgsI	TTSAA	1 cut(s)	366
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	5 cut(s)	400, 405, 425, 499, 504
AluI	AGCT	5 cut(s)	400, 405, 425, 499, 504
Alw21I	GWGCWC	2 cut(s)	80, 317
Alw26I	GTCTC	2 cut(s)	349, 420
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	210, 321
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	578
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	5 cut(s)	110, 161, 281, 470, 482
AvaI	CYCGRG	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	80, 317
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	2 cut(s)	33, 76
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	349, 420
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	1 cut(s)	497
BlpI	GCTNAGC	2 cut(s)	401, 500
BlsI	GCNGC	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	1 cut(s)	406
Bpu1102I	GCTNAGC	2 cut(s)	401, 500
BsaBI	GATNNNNATC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	324, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 183
Bse1I	ACTGG	2 cut(s)	177, 213
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	324, 383
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	55, 183
BseMII	CTCAG	2 cut(s)	339, 392
BseNI	ACTGG	2 cut(s)	177, 213
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	508
BshFI	GGCC	2 cut(s)	212, 323
BsiHKAI	GWGCWC	2 cut(s)	80, 317
BsiHKCI	CYCGRG	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	55, 183
BsmAI	GTCTC	2 cut(s)	349, 420
BsnI	GGCC	2 cut(s)	212, 323
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	80, 317
Bsp143I	GATC	1 cut(s)	487
Bsp1720I	GCTNAGC	2 cut(s)	401, 500
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	2 cut(s)	212, 323
BspCNI	CTCAG	2 cut(s)	340, 393
BspTNI	GGTCTC	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	177, 213
BssECI	CCNNGG	2 cut(s)	324, 383
BssMI	GATC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	45, 98
Bst6I	CTCTTC	2 cut(s)	48, 386
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	348, 401, 500
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	2 cut(s)	349, 420
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	212, 323
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	70, 184, 206
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	215
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	348, 401, 500
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	48, 386
EarI	CTCTTC	2 cut(s)	48, 386
Eco31I	GGTCTC	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	383
FaeI	CATG	1 cut(s)	218
FaiI	YATR	7 cut(s)	18, 201, 216, 225, 241, 251, 456
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 389, 421
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	497
Fsp4HI	GCNGC	1 cut(s)	497
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	497
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	212, 323
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	7 cut(s)	119, 125, 152, 173, 255, 329, 548
HphI	GGTGA	5 cut(s)	110, 161, 281, 470, 482
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	6 cut(s)	124, 157, 304, 349, 508, 577
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	5 cut(s)	62, 140, 260, 442, 458
HpyCH4III	ACNGT	2 cut(s)	45, 98
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	3 cut(s)	348, 401, 500
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	487
LpnPI	CCDG	9 cut(s)	40, 97, 169, 190, 194, 213, 305, 370, 397
Lsp1109I	GCAGC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	360
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	6 cut(s)	65, 155, 243, 403, 473, 547
MhlI	GDGCHC	2 cut(s)	80, 317
MluCI	AATT	3 cut(s)	220, 578, 592
MlyI	GAGTC	2 cut(s)	113, 323
MnlI	CCTC	7 cut(s)	49, 85, 265, 319, 381, 535, 538
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	5 cut(s)	125, 152, 173, 255, 548
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	2 cut(s)	113, 323
PpsI	GAGTC	2 cut(s)	113, 323
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	113, 323
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	2 cut(s)	80, 317
Sse9I	AATT	3 cut(s)	220, 578, 592
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	45, 98
TaqII	GACCGA	2 cut(s)	402, 552
TasI	AATT	3 cut(s)	220, 578, 592
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	5 cut(s)	125, 152, 173, 255, 548
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	3 cut(s)	70, 184, 213
TseI	GCWGC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	397, 525, 540
TspRI	CASTG	3 cut(s)	70, 184, 213
XapI	RAATTY	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.