Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004556.1

Orthogroup ID

OG0008328

Physical Location & Seq

Genomic Coordinates Forward (+)

6847 .. 8932

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004556.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atggtggtgaagatgatgaagtggcggccgtggccgccgctgaatacgaggaagtacgaggtgaggctggtggtgcggcggctggaggggtgggatccggtgcgggaggaggaggaggaggattccggcgagagtaagctggccgttgaggttaggtggaaggggaccagtagggggaaagtggggcccctgagctcgctacggcgggcggtggtgaagaggaactttacgaaggaggtggaggcgggtcaagacggcgtcgttcagtgggacgaggagtttcacagcgcttgcgcttttaattcgtacaaggacaatgtgtttcatccctgggagatcgccttcactgtgtttgatggtctgaatcaagggccaaaaattaaagctcctgttgtgggaacagcatcggtgaaccttgctgaatttgttgccgcagctgaagaaaatgagcttcagttgaacattcccctcaccacatctggcggtgctgctgagccctgtccctcactttgtatatcgcttggtttattggaattgagaacggcgcaagaaatgacagagccggtgcagggatcaattattcctgctccatcaccagcccaatcaagagaaactgtatctgcagaaaaggatgagctttctgctcttaaagccggtcttaggaaagttaagatttttaccgagtatgtgtccaccagaaaagcgaaaaaaccgtgccgtgaagaggacggcagtgaaggtaggtgctctgccagaagtgaggacggtgagtacaactatccatttgactctgattcacttgacgattgtgaagaaggtgaatcagatgatgtcaaagatgattccagtgtcaggaagtcattcagttatggcacactggcccatgcaaattatgctggaagaacaatatactccaatatgagaatcaatggcgaaggtgaggattgggtttattacagcaatcgcaaatcagatgtggggtgctcacaggccgaggactcatctgtatcagtctctgagccatctgctagttcaaagcggggcttactaccctggaggaagagaaagctgagcttcattcggtctcctaaagctaaaggagaaccattgttaaagaaggcttatggtgaagaaggtggtgatgacattgattttgatcgtcggcagcttagctctgatgaatgtctatctctcggggtaagatcctgtactgatagctctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

408

Amino Acids

45.28

Weight (kDa)

5.18

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11760
fragaria_vesca	FvH4_6g20670 FvH4_6g20670 FvH4_6g20670 FvH4_6g20670 FvH4_6g20670
malus_domestica	MD12G1043000.v1.1 MD14G1041900.v1.1
prunus_persica	Prupe.7G091900_v2.0.a1 Prupe.7G091900_v2.0.a1
pyrus_communis	pycom12g03710
rosa_chinensis	RchiOBHm_Chr3g0476551
rosa_laevigata	RLG00000023762
rosa_multiflora	Rmu_co8347013.1_g000001 Rmu_sc0004556.1_g000001 Rmu_sc0033898.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405230
rosa_rugosa	Rorug03G0154800
rosa_samantha	Rh3AG205900 Rh3BG238300 Rh3CG232100 Rh3DG232000
rosa_wichuraiana	Rw3G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	89, 102, 580, 1197
AcoI	YGGCCR	3 cut(s)	26, 32, 141
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	437, 459
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	4 cut(s)	56, 308, 773, 1210
AfeI	AGCGCT	1 cut(s)	289
AfiI	CCNNNNNNNGG	6 cut(s)	174, 395, 569, 660, 724, 852
AgsI	TTSAA	2 cut(s)	460, 1035
AjnI	CCWGG	2 cut(s)	329, 1052
Alw21I	GWGCWC	3 cut(s)	197, 749, 986
Alw26I	GTCTC	2 cut(s)	1018, 1089
AlwI	GGATC	4 cut(s)	89, 102, 580, 1197
AlwNI	CAGNNNCTG	1 cut(s)	1016
Ama87I	CYCGRG	1 cut(s)	1193
Aor51HI	AGCGCT	1 cut(s)	289
AoxI	GGCC	7 cut(s)	26, 32, 141, 185, 371, 879, 990
ApaI	GGGCCC	1 cut(s)	189
ApeKI	GCWGC	3 cut(s)	434, 488, 1165
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	3 cut(s)	290, 296, 547
AspS9I	GGNCC	5 cut(s)	165, 185, 186, 371, 880
AvaI	CYCGRG	1 cut(s)	1193
AvaII	GGWCC	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	3 cut(s)	189, 197, 498
Bbv12I	GWGCWC	3 cut(s)	197, 749, 986
BbvI	GCAGC	3 cut(s)	446, 475, 1177
BccI	CCATC	3 cut(s)	350, 598, 1030
BceAI	ACGGC	7 cut(s)	13, 128, 218, 271, 558, 702, 745
BciT130I	CCWGG	2 cut(s)	331, 1054
BcoDI	GTCTC	2 cut(s)	1018, 1089
BfaI	CTAG	1 cut(s)	1029
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 432, 435, 489, 1166
BlpI	GCTNAGC	3 cut(s)	492, 1070, 1169
BlsI	GCNGC	9 cut(s)	27, 36, 39, 78, 81, 433, 436, 490, 1167
Bme1390I	CCNGG	2 cut(s)	331, 1054
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	1193
BmgT120I	GGNCC	5 cut(s)	165, 185, 186, 371, 880
BmiI	GGNNCC	5 cut(s)	96, 166, 186, 187, 188
BmrFI	CCNGG	2 cut(s)	331, 1054
BmsI	GCATC	1 cut(s)	413
BpmI	CTGGAG	2 cut(s)	104, 1075
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu1102I	GCTNAGC	3 cut(s)	492, 1070, 1169
BsaBI	GATNNNNATC	1 cut(s)	1155
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	1089
BsaJI	CCNNGG	5 cut(s)	29, 329, 330, 993, 1052
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	6 cut(s)	174, 395, 569, 660, 724, 852
Bse118I	RCCGGY	2 cut(s)	562, 653
Bse1I	ACTGG	3 cut(s)	168, 846, 882
Bse8I	GATNNNNATC	1 cut(s)	1155
BseBI	CCWGG	2 cut(s)	331, 1054
BseDI	CCNNGG	5 cut(s)	29, 329, 330, 993, 1052
BseGI	GGATG	2 cut(s)	325, 637
BseJI	GATNNNNATC	1 cut(s)	1155
BseLI	CCNNNNNNNGG	6 cut(s)	174, 395, 569, 660, 724, 852
BseMII	CTCAG	4 cut(s)	182, 483, 1008, 1061
BseNI	ACTGG	3 cut(s)	168, 846, 882
BseRI	GAGGAG	5 cut(s)	122, 125, 128, 131, 290
BseSI	GKGCMC	1 cut(s)	189
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	446, 475, 1177
BsgI	GTGCAG	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	7 cut(s)	28, 34, 143, 187, 373, 881, 992
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	3 cut(s)	197, 749, 986
BsiHKCI	CYCGRG	1 cut(s)	1193
BsiSI	CCGG	4 cut(s)	98, 126, 563, 654
BslFI	GGGAC	3 cut(s)	178, 284, 486
BslI	CCNNNNNNNGG	6 cut(s)	174, 395, 569, 660, 724, 852
BsmAI	GTCTC	2 cut(s)	1018, 1089
BsmFI	GGGAC	3 cut(s)	178, 284, 486
BsnI	GGCC	7 cut(s)	28, 34, 143, 187, 373, 881, 992
Bso31I	GGTCTC	1 cut(s)	1089
BsoBI	CYCGRG	1 cut(s)	1193
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	5 cut(s)	189, 197, 498, 749, 986
Bsp143I	GATC	5 cut(s)	94, 336, 572, 1156, 1202
Bsp1720I	GCTNAGC	3 cut(s)	492, 1070, 1169
BspANI	GGCC	7 cut(s)	28, 34, 143, 187, 373, 881, 992
BspCNI	CTCAG	4 cut(s)	183, 484, 1009, 1062
BspLI	GGNNCC	5 cut(s)	96, 166, 186, 187, 188
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	4 cut(s)	89, 102, 580, 1197
BspTNI	GGTCTC	1 cut(s)	1089
BsrFI	RCCGGY	2 cut(s)	562, 653
BsrI	ACTGG	3 cut(s)	168, 846, 882
BssAI	RCCGGY	2 cut(s)	562, 653
BssECI	CCNNGG	5 cut(s)	29, 329, 330, 993, 1052
BssMI	GATC	5 cut(s)	94, 336, 572, 1156, 1202
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	331, 1054
Bst4CI	ACNGT	4 cut(s)	349, 616, 714, 767
Bst6I	CTCTTC	3 cut(s)	212, 717, 1055
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	4 cut(s)	141, 197, 207, 292
BstDEI	CTNAG	6 cut(s)	191, 492, 659, 1017, 1070, 1169
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	325, 637
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	3 cut(s)	290, 296, 547
BstKTI	GATC	5 cut(s)	97, 339, 575, 1159, 1205
BstMAI	GTCTC	2 cut(s)	1018, 1089
BstMBI	GATC	5 cut(s)	94, 336, 572, 1156, 1202
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 34, 73, 650, 893
BstNI	CCWGG	2 cut(s)	331, 1054
BstSCI	CCNGG	2 cut(s)	329, 1052
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	446, 475, 1177
BstX2I	RGATCY	2 cut(s)	94, 1202
BstYI	RGATCY	2 cut(s)	94, 1202
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	7 cut(s)	28, 34, 143, 187, 373, 881, 992
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	325, 637
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	5 cut(s)	272, 345, 739, 853, 875
Cac8I	GCNNGC	4 cut(s)	141, 197, 207, 292
CaiI	CAGNNNCTG	1 cut(s)	1016
CfoI	GCGC	3 cut(s)	290, 296, 547
Cfr10I	RCCGGY	2 cut(s)	562, 653
Cfr13I	GGNCC	5 cut(s)	165, 185, 186, 371, 880
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	4 cut(s)	55, 307, 772, 1209
CviAII	CATG	1 cut(s)	884
CviQI	GTAC	4 cut(s)	55, 307, 772, 1209
DdeI	CTNAG	6 cut(s)	191, 492, 659, 1017, 1070, 1169
DpnI	GATC	5 cut(s)	96, 338, 574, 1158, 1204
DpnII	GATC	5 cut(s)	94, 336, 572, 1156, 1202
EaeI	YGGCCR	3 cut(s)	26, 32, 141
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	212, 717, 1055
EarI	CTCTTC	3 cut(s)	212, 717, 1055
Ecl136II	GAGCTC	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	26
Eco24I	GRGCYC	3 cut(s)	189, 197, 498
Eco31I	GGTCTC	1 cut(s)	1089
Eco47I	GGWCC	1 cut(s)	165
Eco47III	AGCGCT	1 cut(s)	289
Eco52I	CGGCCG	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	437, 459
Eco88I	CYCGRG	1 cut(s)	1193
EcoICRI	GAGCTC	1 cut(s)	195
EcoO109I	RGGNCCY	2 cut(s)	185, 186
EcoRII	CCWGG	2 cut(s)	329, 1052
EcoT38I	GRGCYC	3 cut(s)	189, 197, 498
FaeI	CATG	1 cut(s)	887
FaiI	YATR	9 cut(s)	515, 687, 870, 885, 894, 910, 920, 1125, 1225
FalI	AAGNNNNNCTT	8 cut(s)	209, 241, 642, 674, 1028, 1060, 1058, 1090
FaqI	GGGAC	3 cut(s)	178, 284, 486
FatI	CATG	1 cut(s)	883
FauI	CCCGC	4 cut(s)	96, 198, 238, 1032
Fnu4HI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 432, 435, 489, 1166
FokI	GGATG	2 cut(s)	312, 644
FriOI	GRGCYC	3 cut(s)	189, 197, 498
Fsp4HI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 432, 435, 489, 1166
FspBI	CTAG	1 cut(s)	1029
GlaI	GCGC	3 cut(s)	289, 295, 546
GluI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 432, 435, 489, 1166
GsuI	CTGGAG	2 cut(s)	104, 1075
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	7 cut(s)	28, 34, 143, 187, 373, 881, 992
HapII	CCGG	4 cut(s)	98, 126, 563, 654
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	3 cut(s)	290, 296, 547
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	887
Hin6I	GCGC	3 cut(s)	288, 294, 545
HinP1I	GCGC	3 cut(s)	288, 294, 545
HinfI	GANTC	8 cut(s)	122, 364, 788, 794, 821, 842, 924, 998
HpaII	CCGG	4 cut(s)	98, 126, 563, 654
Hpy166II	GTNNAC	2 cut(s)	412, 693
Hpy188I	TCNGA	6 cut(s)	363, 793, 826, 973, 1018, 1177
Hpy188III	TCNNGA	3 cut(s)	251, 606, 853
Hpy8I	GTNNAC	2 cut(s)	412, 693
Hpy99I	CGWCG	2 cut(s)	263, 1164
HpyAV	CCTTC	8 cut(s)	154, 226, 352, 731, 809, 929, 1111, 1127
HpyCH4III	ACNGT	4 cut(s)	349, 616, 714, 767
HpyCH4V	TGCA	3 cut(s)	568, 623, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 34, 73, 650, 893
HpyF3I	CTNAG	6 cut(s)	191, 492, 659, 1017, 1070, 1169
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	887
HspAI	GCGC	3 cut(s)	288, 294, 545
Kzo9I	GATC	5 cut(s)	94, 336, 572, 1156, 1202
LmnI	GCTCC	2 cut(s)	391, 592
Lsp1109I	GCAGC	3 cut(s)	446, 475, 1177
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	1029
MalI	GATC	5 cut(s)	96, 338, 574, 1158, 1204
MboI	GATC	5 cut(s)	94, 336, 572, 1156, 1202
MboII	GAAGA	8 cut(s)	22, 229, 452, 734, 824, 912, 1072, 1142
MflI	RGATCY	2 cut(s)	94, 1202
MhlI	GDGCHC	5 cut(s)	189, 197, 498, 749, 986
MluCI	AATT	6 cut(s)	301, 378, 422, 533, 576, 889
MlyI	GAGTC	2 cut(s)	782, 992
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	5 cut(s)	300, 381, 648, 669, 1112
MspA1I	CMGCKG	2 cut(s)	40, 437
MspI	CCGG	4 cut(s)	98, 126, 563, 654
MspR9I	CCNGG	2 cut(s)	331, 1054
MvaI	CCWGG	2 cut(s)	331, 1054
MwoI	GCNNNNNNNGC	5 cut(s)	31, 34, 73, 650, 893
NdeII	GATC	5 cut(s)	94, 336, 572, 1156, 1202
NlaIII	CATG	1 cut(s)	887
NlaIV	GGNNCC	5 cut(s)	96, 166, 186, 187, 188
NmeAIII	GCCGAG	1 cut(s)	1018
PasI	CCCWGGG	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	6 cut(s)	122, 364, 794, 821, 842, 924
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	9 cut(s)	27, 36, 39, 78, 81, 433, 436, 490, 1167
PleI	GAGTC	2 cut(s)	782, 992
PpsI	GAGTC	2 cut(s)	782, 992
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	329, 1052
PspGI	CCWGG	2 cut(s)	329, 1052
PspN4I	GGNNCC	5 cut(s)	96, 166, 186, 187, 188
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	5 cut(s)	165, 185, 186, 371, 880
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	1016
PsuI	RGATCY	2 cut(s)	94, 1202
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	4 cut(s)	56, 308, 773, 1210
RsaNI	GTAC	4 cut(s)	55, 307, 772, 1209
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	5 cut(s)	300, 381, 648, 669, 1112
SatI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 432, 435, 489, 1166
Sau3AI	GATC	5 cut(s)	94, 336, 572, 1156, 1202
Sau96I	GGNCC	5 cut(s)	165, 185, 186, 371, 880
SchI	GAGTC	2 cut(s)	782, 992
ScrFI	CCNGG	2 cut(s)	331, 1054
SduI	GDGCHC	5 cut(s)	189, 197, 498, 749, 986
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	165
Sse9I	AATT	6 cut(s)	301, 378, 422, 533, 576, 889
SspMI	CTAG	1 cut(s)	1029
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	329, 1052
TaaI	ACNGT	4 cut(s)	349, 616, 714, 767
TaqII	GACCGA	1 cut(s)	1071
TasI	AATT	6 cut(s)	301, 378, 422, 533, 576, 889
TatI	WGTACW	2 cut(s)	771, 1208
TauI	GCSGC	6 cut(s)	28, 37, 40, 79, 82, 434
TfiI	GAWTC	6 cut(s)	122, 364, 794, 821, 842, 924
Tru1I	TTAA	5 cut(s)	300, 381, 648, 669, 1112
Tru9I	TTAA	5 cut(s)	300, 381, 648, 669, 1112
TscAI	CASTG	5 cut(s)	272, 352, 739, 853, 882
TseI	GCWGC	3 cut(s)	434, 488, 1165
TspDTI	ATGAA	4 cut(s)	32, 314, 1066, 1194
TspRI	CASTG	5 cut(s)	272, 352, 739, 853, 882
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	1 cut(s)	1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.