Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033898.1

Orthogroup ID

OG0008328

Physical Location & Seq

Genomic Coordinates Forward (+)

10820 .. 12902

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033898.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggtggtgaagatgatgaagtggcggccgtggccgccgctgaatacgaggaagtacgaggtgaggctggtggtgcggcggctggaggggtgggatccggtgcgggaggaggaggatgattccggcgagagtaagctgaccgttgaggttaggtggaaggggaccagtagggggaaagtggggcccctgagctcgctacggcgggcggtggtgaagaggaactttacgaaggaggtggaagcgggtcaagacggcgtcgttcagtgggacgaggagtttcacagcgcttgcgcttttaattcgtacaaggacaatgtgtttcatccttgggagatcgccttcactgtgtttgatggtctgaatcaagggccaaaaattaaagctcctgttgtgggaacagcatcggtgaaccttgctgaatttgttgccgcagctgaagaaaatgagcttcagttgaacattcccctcaccacatctggcggtgctgctgagccctgtccctcactttgtatatcgcttggtttattggaattgagaacggcgcaagaaatgacagagccggtgcagggatcaattattcctgctccatcaccttcccaatcaagagaaactgtatctgcagaaaaggatgagctttctgctcttaaagccggtcttaggaaagtaaagatttttaccgagtatgtgtccaccagaaaagcgaaaaaaccgtgccgtgaagaggacggcagtgaaggtaggtgctctgccagaagtgaggacggtgagtacaactatccatttgactctgattcacttgacgattgtgaagaaggtgaatcagatgatgtcaaagatgattccagtgtcaggaagtcattcagttatggcacactggcccatgcaaattatgctggaagaacaatatactccaatatgagaatcaatggcgaaggtgaggattgggtttattacagcaatcgcaaatcagatgtggggtgctcacaggccgaggactcatctgtatcagtctctgagccatctgctagttcaaagcggggcttactaccctggaggaagagaaagctgagcttcattcggtctcctaaagctaaaggagaaccattgttaaagaaggcttatggtgaagaaggtggtgatgacattgattttgatcgtcggcagcttagctctgatgaatgtctatctctcggggtaagatcctgtactgatagctctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

407

Amino Acids

45.18

Weight (kDa)

5.22

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11760
fragaria_vesca	FvH4_6g20670 FvH4_6g20670 FvH4_6g20670 FvH4_6g20670 FvH4_6g20670
malus_domestica	MD12G1043000.v1.1 MD14G1041900.v1.1
prunus_persica	Prupe.7G091900_v2.0.a1 Prupe.7G091900_v2.0.a1
pyrus_communis	pycom12g03710
rosa_chinensis	RchiOBHm_Chr3g0476551
rosa_laevigata	RLG00000023762
rosa_multiflora	Rmu_co8347013.1_g000001 Rmu_sc0004556.1_g000001 Rmu_sc0033898.1_g000002
rosa_roxburghii	Rroxscaffold_6G00405230
rosa_rugosa	Rorug03G0154800
rosa_samantha	Rh3AG205900 Rh3BG238300 Rh3CG232100 Rh3DG232000
rosa_wichuraiana	Rw3G018740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	89, 102, 577, 1194
AcoI	YGGCCR	2 cut(s)	26, 32
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	434, 456
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	4 cut(s)	56, 305, 770, 1207
AfeI	AGCGCT	1 cut(s)	286
AfiI	CCNNNNNNNGG	6 cut(s)	171, 392, 566, 657, 721, 849
AgsI	TTSAA	2 cut(s)	457, 1032
AjnI	CCWGG	1 cut(s)	1049
Alw21I	GWGCWC	3 cut(s)	194, 746, 983
Alw26I	GTCTC	2 cut(s)	1015, 1086
AlwI	GGATC	4 cut(s)	89, 102, 577, 1194
AlwNI	CAGNNNCTG	1 cut(s)	1013
Ama87I	CYCGRG	1 cut(s)	1190
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	6 cut(s)	26, 32, 182, 368, 876, 987
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	431, 485, 1162
ApoI	RAATTY	1 cut(s)	419
ArsI	GACNNNNNNTTYG	2 cut(s)	1133, 1165
Asp700I	GAANNNNTTC	1 cut(s)	857
AspLEI	GCGC	3 cut(s)	287, 293, 544
AspS9I	GGNCC	5 cut(s)	162, 182, 183, 368, 877
AvaI	CYCGRG	1 cut(s)	1190
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	3 cut(s)	186, 194, 495
Bbv12I	GWGCWC	3 cut(s)	194, 746, 983
BbvI	GCAGC	3 cut(s)	443, 472, 1174
BccI	CCATC	3 cut(s)	347, 595, 1027
BceAI	ACGGC	6 cut(s)	13, 215, 268, 555, 699, 742
BciT130I	CCWGG	1 cut(s)	1051
BcoDI	GTCTC	2 cut(s)	1015, 1086
BfaI	CTAG	1 cut(s)	1026
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 429, 432, 486, 1163
BlpI	GCTNAGC	3 cut(s)	489, 1067, 1166
BlsI	GCNGC	9 cut(s)	27, 36, 39, 78, 81, 430, 433, 487, 1164
Bme1390I	CCNGG	1 cut(s)	1051
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	1190
BmgT120I	GGNCC	5 cut(s)	162, 182, 183, 368, 877
BmiI	GGNNCC	5 cut(s)	96, 163, 183, 184, 185
BmrFI	CCNGG	1 cut(s)	1051
BmsI	GCATC	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	104, 1072
Bpu10I	CCTNAGC	1 cut(s)	188
Bpu1102I	GCTNAGC	3 cut(s)	489, 1067, 1166
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	1086
BsaJI	CCNNGG	4 cut(s)	29, 326, 990, 1049
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 392, 566, 657, 721, 849
Bse118I	RCCGGY	2 cut(s)	559, 650
Bse1I	ACTGG	3 cut(s)	165, 843, 879
Bse8I	GATNNNNATC	1 cut(s)	1152
BseBI	CCWGG	1 cut(s)	1051
BseDI	CCNNGG	4 cut(s)	29, 326, 990, 1049
BseGI	GGATG	3 cut(s)	121, 322, 634
BseJI	GATNNNNATC	1 cut(s)	1152
BseLI	CCNNNNNNNGG	6 cut(s)	171, 392, 566, 657, 721, 849
BseMII	CTCAG	4 cut(s)	179, 480, 1005, 1058
BseNI	ACTGG	3 cut(s)	165, 843, 879
BseRI	GAGGAG	3 cut(s)	122, 125, 287
BseSI	GKGCMC	1 cut(s)	186
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	443, 472, 1174
BsgI	GTGCAG	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	6 cut(s)	28, 34, 184, 370, 878, 989
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	3 cut(s)	194, 746, 983
BsiHKCI	CYCGRG	1 cut(s)	1190
BsiSI	CCGG	4 cut(s)	98, 123, 560, 651
BslFI	GGGAC	3 cut(s)	175, 281, 483
BslI	CCNNNNNNNGG	6 cut(s)	171, 392, 566, 657, 721, 849
BsmAI	GTCTC	2 cut(s)	1015, 1086
BsmFI	GGGAC	3 cut(s)	175, 281, 483
BsnI	GGCC	6 cut(s)	28, 34, 184, 370, 878, 989
Bso31I	GGTCTC	1 cut(s)	1086
BsoBI	CYCGRG	1 cut(s)	1190
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	5 cut(s)	186, 194, 495, 746, 983
Bsp143I	GATC	5 cut(s)	94, 333, 569, 1153, 1199
Bsp1720I	GCTNAGC	3 cut(s)	489, 1067, 1166
BspANI	GGCC	6 cut(s)	28, 34, 184, 370, 878, 989
BspCNI	CTCAG	4 cut(s)	180, 481, 1006, 1059
BspLI	GGNNCC	5 cut(s)	96, 163, 183, 184, 185
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	4 cut(s)	89, 102, 577, 1194
BspTNI	GGTCTC	1 cut(s)	1086
BsrFI	RCCGGY	2 cut(s)	559, 650
BsrI	ACTGG	3 cut(s)	165, 843, 879
BssAI	RCCGGY	2 cut(s)	559, 650
BssECI	CCNNGG	4 cut(s)	29, 326, 990, 1049
BssMI	GATC	5 cut(s)	94, 333, 569, 1153, 1199
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	1051
Bst4CI	ACNGT	5 cut(s)	142, 346, 613, 711, 764
Bst6I	CTCTTC	3 cut(s)	209, 714, 1052
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	3 cut(s)	194, 204, 289
BstDEI	CTNAG	6 cut(s)	188, 489, 656, 1014, 1067, 1166
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	121, 322, 634
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	287, 293, 544
BstKTI	GATC	5 cut(s)	97, 336, 572, 1156, 1202
BstMAI	GTCTC	2 cut(s)	1015, 1086
BstMBI	GATC	5 cut(s)	94, 333, 569, 1153, 1199
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 34, 73, 647, 890
BstNI	CCWGG	1 cut(s)	1051
BstSCI	CCNGG	1 cut(s)	1049
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	443, 472, 1174
BstX2I	RGATCY	2 cut(s)	94, 1199
BstYI	RGATCY	2 cut(s)	94, 1199
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	6 cut(s)	28, 34, 184, 370, 878, 989
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	121, 322, 634
BtsI	GCAGTG	1 cut(s)	736
BtsIMutI	CAGTG	5 cut(s)	269, 342, 736, 850, 872
Cac8I	GCNNGC	3 cut(s)	194, 204, 289
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	3 cut(s)	287, 293, 544
Cfr10I	RCCGGY	2 cut(s)	559, 650
Cfr13I	GGNCC	5 cut(s)	162, 182, 183, 368, 877
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	4 cut(s)	55, 304, 769, 1206
CviAII	CATG	1 cut(s)	881
CviQI	GTAC	4 cut(s)	55, 304, 769, 1206
DdeI	CTNAG	6 cut(s)	188, 489, 656, 1014, 1067, 1166
DpnI	GATC	5 cut(s)	96, 335, 571, 1155, 1201
DpnII	GATC	5 cut(s)	94, 333, 569, 1153, 1199
EaeI	YGGCCR	2 cut(s)	26, 32
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	209, 714, 1052
EarI	CTCTTC	3 cut(s)	209, 714, 1052
Ecl136II	GAGCTC	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	326
Eco24I	GRGCYC	3 cut(s)	186, 194, 495
Eco31I	GGTCTC	1 cut(s)	1086
Eco47I	GGWCC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	286
Eco52I	CGGCCG	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	434, 456
Eco88I	CYCGRG	1 cut(s)	1190
EcoICRI	GAGCTC	1 cut(s)	192
EcoO109I	RGGNCCY	2 cut(s)	182, 183
EcoRII	CCWGG	1 cut(s)	1049
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	3 cut(s)	186, 194, 495
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	1 cut(s)	884
FaiI	YATR	9 cut(s)	512, 684, 867, 882, 891, 907, 917, 1122, 1222
FalI	AAGNNNNNCTT	8 cut(s)	206, 238, 639, 671, 1025, 1057, 1055, 1087
FaqI	GGGAC	3 cut(s)	175, 281, 483
FatI	CATG	1 cut(s)	880
FauI	CCCGC	4 cut(s)	96, 195, 235, 1029
Fnu4HI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 429, 432, 486, 1163
FokI	GGATG	3 cut(s)	128, 309, 641
FriOI	GRGCYC	3 cut(s)	186, 194, 495
Fsp4HI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 429, 432, 486, 1163
FspBI	CTAG	1 cut(s)	1026
GlaI	GCGC	3 cut(s)	286, 292, 543
GluI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 429, 432, 486, 1163
GsuI	CTGGAG	2 cut(s)	104, 1072
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	6 cut(s)	28, 34, 184, 370, 878, 989
HapII	CCGG	4 cut(s)	98, 123, 560, 651
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	3 cut(s)	287, 293, 544
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	884
Hin6I	GCGC	3 cut(s)	285, 291, 542
HinP1I	GCGC	3 cut(s)	285, 291, 542
HinfI	GANTC	8 cut(s)	119, 361, 785, 791, 818, 839, 921, 995
HpaII	CCGG	4 cut(s)	98, 123, 560, 651
Hpy166II	GTNNAC	2 cut(s)	409, 690
Hpy188I	TCNGA	6 cut(s)	360, 790, 823, 970, 1015, 1174
Hpy188III	TCNNGA	3 cut(s)	248, 603, 850
Hpy8I	GTNNAC	2 cut(s)	409, 690
Hpy99I	CGWCG	2 cut(s)	260, 1161
HpyAV	CCTTC	9 cut(s)	151, 223, 349, 603, 728, 806, 926, 1108, 1124
HpyCH4III	ACNGT	5 cut(s)	142, 346, 613, 711, 764
HpyCH4V	TGCA	3 cut(s)	565, 620, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 34, 73, 647, 890
HpyF3I	CTNAG	6 cut(s)	188, 489, 656, 1014, 1067, 1166
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	884
HspAI	GCGC	3 cut(s)	285, 291, 542
Kzo9I	GATC	5 cut(s)	94, 333, 569, 1153, 1199
LmnI	GCTCC	2 cut(s)	388, 589
Lsp1109I	GCAGC	3 cut(s)	443, 472, 1174
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	1026
MalI	GATC	5 cut(s)	96, 335, 571, 1155, 1201
MboI	GATC	5 cut(s)	94, 333, 569, 1153, 1199
MboII	GAAGA	8 cut(s)	22, 226, 449, 731, 821, 909, 1069, 1139
MflI	RGATCY	2 cut(s)	94, 1199
MhlI	GDGCHC	5 cut(s)	186, 194, 495, 746, 983
MluCI	AATT	6 cut(s)	298, 375, 419, 530, 573, 886
MlyI	GAGTC	2 cut(s)	779, 989
MroXI	GAANNNNTTC	1 cut(s)	857
MseI	TTAA	4 cut(s)	297, 378, 645, 1109
MspA1I	CMGCKG	2 cut(s)	40, 434
MspI	CCGG	4 cut(s)	98, 123, 560, 651
MspR9I	CCNGG	1 cut(s)	1051
MvaI	CCWGG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	5 cut(s)	31, 34, 73, 647, 890
NdeII	GATC	5 cut(s)	94, 333, 569, 1153, 1199
NlaIII	CATG	1 cut(s)	884
NlaIV	GGNNCC	5 cut(s)	96, 163, 183, 184, 185
NmeAIII	GCCGAG	1 cut(s)	1015
PdmI	GAANNNNTTC	1 cut(s)	857
PfeI	GAWTC	6 cut(s)	119, 361, 791, 818, 839, 921
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	9 cut(s)	27, 36, 39, 78, 81, 430, 433, 487, 1164
PleI	GAGTC	2 cut(s)	779, 989
PpsI	GAGTC	2 cut(s)	779, 989
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	1049
PspGI	CCWGG	1 cut(s)	1049
PspN4I	GGNNCC	5 cut(s)	96, 163, 183, 184, 185
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	5 cut(s)	162, 182, 183, 368, 877
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	2 cut(s)	94, 1199
PsyI	GACNNNGTC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	4 cut(s)	56, 305, 770, 1207
RsaNI	GTAC	4 cut(s)	55, 304, 769, 1206
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	4 cut(s)	297, 378, 645, 1109
SatI	GCNGC	9 cut(s)	26, 35, 38, 77, 80, 429, 432, 486, 1163
Sau3AI	GATC	5 cut(s)	94, 333, 569, 1153, 1199
Sau96I	GGNCC	5 cut(s)	162, 182, 183, 368, 877
SchI	GAGTC	2 cut(s)	779, 989
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	5 cut(s)	186, 194, 495, 746, 983
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	6 cut(s)	298, 375, 419, 530, 573, 886
SspMI	CTAG	1 cut(s)	1026
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	1049
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	5 cut(s)	142, 346, 613, 711, 764
TaqII	GACCGA	1 cut(s)	1068
TasI	AATT	6 cut(s)	298, 375, 419, 530, 573, 886
TatI	WGTACW	2 cut(s)	768, 1205
TauI	GCSGC	6 cut(s)	28, 37, 40, 79, 82, 431
TfiI	GAWTC	6 cut(s)	119, 361, 791, 818, 839, 921
Tru1I	TTAA	4 cut(s)	297, 378, 645, 1109
Tru9I	TTAA	4 cut(s)	297, 378, 645, 1109
TscAI	CASTG	5 cut(s)	269, 349, 736, 850, 879
TseI	GCWGC	3 cut(s)	431, 485, 1162
TspDTI	ATGAA	4 cut(s)	32, 311, 1063, 1191
TspRI	CASTG	5 cut(s)	269, 349, 736, 850, 879
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	857
XspI	CTAG	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.