Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8356951.1

Orthogroup ID

OG0020445

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 876

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8356951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

atgaaaacttcaatccgaaactctctgattttggtctagcaaagcttggtccaactggggataagagtcatgtgtcgaccagggttatgggaacctatggatattgtgctcctgaatatgctctcacgggccaattgacaacaaaatccgacatttatagctttggagttgtgtttttggagataatcactgggaggagagttatagacaacaacagaccaactgaagagcagaatttggttacttgggcacaaccattgtttaaagacagaagaaaatttgtattgatggcagacccattgctacaagggaaataccccataaaaggactttaccaagcacttgcagttgcagctatgtgtctccaagaggaagctgcaactcggcctctgatcagcgatgttgtaacagctttagaatttttatcagtagataaccttggtgaagggggtaatgaaaatatggagaatgacggtgcagatgaaggtactaaagaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

166

Amino Acids

18.27

Weight (kDa)

4.73

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020445)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g20860
rosa_multiflora	Rmu_co8356951.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042670
rosa_samantha	Rh3AG141900 Rh3CG163400 Rh5BG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AcsI	RAATTY	3 cut(s)	234, 277, 418
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	5 cut(s)	45, 161, 355, 376, 412
AluI	AGCT	5 cut(s)	45, 161, 355, 376, 412
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	2 cut(s)	129, 385
ApeKI	GCWGC	2 cut(s)	352, 376
ApoI	RAATTY	3 cut(s)	234, 277, 418
AspS9I	GGNCC	2 cut(s)	49, 129
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	363, 364
BccI	CCATC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	37
BisI	GCNGC	2 cut(s)	353, 377
BlsI	GCNGC	2 cut(s)	354, 378
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 129
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	2 cut(s)	65, 200
BmuI	ACTGGG	2 cut(s)	65, 200
BsaJI	CCNNGG	2 cut(s)	80, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	60, 195
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	80, 438
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	298
BseNI	ACTGG	2 cut(s)	60, 195
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	363, 364
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	131, 387
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	131, 387
Bsp1286I	GDGCHC	2 cut(s)	111, 252
Bsp143I	GATC	1 cut(s)	392
BspANI	GGCC	2 cut(s)	131, 387
BspLI	GGNNCC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	60, 195
BssECI	CCNNGG	2 cut(s)	80, 438
BssMI	GATC	1 cut(s)	392
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	363, 364
BstXI	CCANNNNNNTGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	131, 387
BtgZI	GCGATG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	49, 129
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	7 cut(s)	45, 131, 161, 355, 376, 387, 412
CviKI_1	RGCY	7 cut(s)	45, 131, 161, 355, 376, 387, 412
CviQI	GTAC	1 cut(s)	488
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
DraI	TTTAAA	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	1 cut(s)	73
FaiI	YATR	9 cut(s)	71, 88, 98, 119, 158, 205, 322, 358, 463
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	392
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	353, 377
Fsp4HI	GCNGC	2 cut(s)	353, 377
FspBI	CTAG	1 cut(s)	37
GluI	GCNGC	2 cut(s)	353, 377
HaeIII	GGCC	2 cut(s)	131, 387
Hin1II	CATG	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	4 cut(s)	17, 27, 150, 392
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	439, 478
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	346, 352, 379, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	392
Kzo9I	GATC	1 cut(s)	392
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	41, 66, 93, 125, 176
Lsp1109I	GCAGC	2 cut(s)	363, 364
MaeI	CTAG	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	240, 405
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	238, 284
MfeI	CAATTG	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	111, 252
MluCI	AATT	4 cut(s)	133, 234, 277, 418
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	76, 173
MnlI	CCTC	3 cut(s)	188, 363, 398
MseI	TTAA	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	354, 378
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	49, 129
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SalI	GTCGAC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	353, 377
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	2 cut(s)	49, 129
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	111, 252
SetI	ASST	8 cut(s)	47, 97, 163, 357, 378, 414, 440, 489
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	4 cut(s)	133, 234, 277, 418
SspMI	CTAG	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	76
TasI	AATT	4 cut(s)	133, 234, 277, 418
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	352, 376
TspDTI	ATGAA	3 cut(s)	17, 470, 497
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	3 cut(s)	234, 277, 418
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.