Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0020445

Physical Location & Seq

Genomic Coordinates Reverse (-)

13762506 .. 13762811

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG163400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTTCTTATTTTCAGGCAAGACCTTTGTTCAAGGACCGGAAAAAATTTTCACAAATGGCAGACCCAGCGTTACAAGGTCAGTATCCCGCAAGAGGATTATACCAGGCTCTGGCTGTTGCGGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCGGTTATAGCTGATGTTGTCACAGCTTTGACATACCTTGCTGCACAAAAGTATGATCCTGAAACACAGCCTCCCCAAAGCTCCCGTCTTGCCCCTTGTACTCCCCCTAGAACCAAGCGGGACAGCGAAAGGAAAGCTCAATGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.47

Weight (kDa)

9.64

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020445)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g20860
rosa_multiflora	Rmu_co8356951.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042670
rosa_samantha	Rh3AG141900 Rh3CG163400 Rh5BG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AciI	CCGC	4 cut(s)	90, 122, 154, 274
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	95, 112
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	4 cut(s)	167, 182, 237, 293
AluI	AGCT	4 cut(s)	167, 182, 237, 293
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	142, 197
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	154, 184
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	96
BisI	GCNGC	4 cut(s)	123, 143, 155, 198
BlsI	GCNGC	4 cut(s)	124, 144, 156, 199
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 112
Bse118I	RCCGGY	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	95, 112
BseMI	GCAATG	1 cut(s)	132
BseX3I	CGGCCG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	154, 184
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	40, 158
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	95, 112
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	4 cut(s)	90, 122, 154, 274
BspANI	GGCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 122, 151
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	154, 184
BstZI	CGGCCG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	255
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	155
EagI	CGGCCG	1 cut(s)	155
EclXI	CGGCCG	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	37
Eco52I	CGGCCG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	105
FaiI	YATR	5 cut(s)	103, 152, 164, 190, 210
FaqI	GGGAC	1 cut(s)	290
FauI	CCCGC	2 cut(s)	97, 267
Fnu4HI	GCNGC	4 cut(s)	123, 143, 155, 198
Fsp4HI	GCNGC	4 cut(s)	123, 143, 155, 198
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	4 cut(s)	123, 143, 155, 198
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	2 cut(s)	40, 158
HpaII	CCGG	2 cut(s)	40, 158
Hpy188III	TCNNGA	2 cut(s)	137, 215
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 122, 151
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	139, 242
LpnPI	CCDG	9 cut(s)	2, 53, 81, 92, 98, 119, 122, 171, 228
Lsp1109I	GCAGC	2 cut(s)	154, 184
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	72, 175
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MluCI	AATT	1 cut(s)	47
MnlI	CCTC	2 cut(s)	89, 237
MspI	CCGG	2 cut(s)	40, 158
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	68, 122, 151
NdeII	GATC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	124, 144, 156, 199
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SatI	GCNGC	4 cut(s)	123, 143, 155, 198
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	7 cut(s)	28, 82, 169, 184, 195, 239, 295
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	90, 122, 154, 274
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	105
TasI	AATT	1 cut(s)	47
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	2 cut(s)	125, 157
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	142, 197
Tsp45I	GTSAC	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	47
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.