Rh5BG263200
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
32950039 .. 32952040
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG263200.1

Sequence Viewer

Length: 564 bp
ATGATGAGTTGTTTCCGATGTTGCATGTCTGAAGAGAAAATCGCTAGGAAGTCATTGAAAAAGAGCATAAAGGAATACCATGACACAAAAACCTTGAACTCATTTGCTAACATCTCCTTCAAAACTGATAGCAGCAGGAGAAAGTATATTACCGATGAAATAGCAAAGATTGGCAAAGGAAATATTTCTGCTCGGATTTTTACTTACCGTGAACTATGTGTTGCAACTCAAAATTTTCATCCTGAATATTTGCTTGGCGAAGGTGGTTTTGGAAGAGTTTACAAAGGCCACCTTGAATGCACAAACCAAGCACAACCATTGTTTAAAGACAGAAGAAAATTTGTATTGATGGCAGACCCATTGCTACAAGGGAAATACCCCATAAAAGGACTTTACCAAGCACTTGCAGTTGCAGCTATGTGTCTCCAAGAGGAAGCTGCAACTCGGCCTCTGATCAGCGATGTTGTAACAGCTTTAGAATTTTTATCAGTAGATAACCTTGGTGAAGGGGGTAATGAAAATATGGAGAATGACGGTGCAGATGAAGGTACTAAAGAAGAATGA

Protein Analysis

187

Amino Acids

21.01

Weight (kDa)

6.83

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020445)

Species Orthologous Gene IDs
pyrus_communis pycom12g20860
rosa_multiflora Rmu_co8356951.1_g000001
rosa_roxburghii Rroxscaffold_1G00042670
rosa_samantha Rh3AG141900 Rh3CG163400 Rh5BG263200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 232, 338, 479
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 4 cut(s) 58, 97, 121, 296
AjuI GAANNNNNNNTTGG 4 cut(s) 237, 252, 269, 284
AluBI AGCT 3 cut(s) 416, 437, 473
AluI AGCT 3 cut(s) 416, 437, 473
Alw26I GTCTC 1 cut(s) 428
AoxI GGCC 2 cut(s) 286, 446
ApeKI GCWGC 3 cut(s) 132, 413, 437
ApoI RAATTY 3 cut(s) 232, 338, 479
Asp700I GAANNNNTTC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 515
BbvI GCAGC 3 cut(s) 144, 424, 425
BccI CCATC 1 cut(s) 343
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 133, 414, 438
BlsI GCNGC 3 cut(s) 134, 415, 439
BsaJI CCNNGG 1 cut(s) 499
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 359
BseXI GCAGC 3 cut(s) 144, 424, 425
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 2 cut(s) 288, 448
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 288, 448
Bsp143I GATC 1 cut(s) 453
BspANI GGCC 2 cut(s) 288, 448
BsrDI GCAATG 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 209, 536
Bst6I CTCTTC 2 cut(s) 27, 268
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 144, 424, 425
BsuRI GGCC 2 cut(s) 288, 448
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 1 cut(s) 238
Csp6I GTAC 1 cut(s) 549
CviAII CATG 2 cut(s) 25, 80
CviJI RGCY 5 cut(s) 288, 416, 437, 448, 473
CviKI_1 RGCY 5 cut(s) 288, 416, 437, 448, 473
CviQI GTAC 1 cut(s) 549
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 27, 268
EarI CTCTTC 2 cut(s) 27, 268
Eco130I CCWWGG 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 2 cut(s) 28, 83
FaiI YATR 8 cut(s) 26, 68, 81, 147, 217, 383, 419, 524
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 2 cut(s) 24, 79
FbaI TGATCA 1 cut(s) 453
Fnu4HI GCNGC 3 cut(s) 133, 414, 438
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 133, 414, 438
FspBI CTAG 1 cut(s) 45
GluI GCNGC 3 cut(s) 133, 414, 438
HaeIII GGCC 2 cut(s) 288, 448
Hin1II CATG 2 cut(s) 28, 83
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 212, 280
Hpy188I TCNGA 4 cut(s) 17, 31, 195, 453
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 2 cut(s) 212, 280
HpyAV CCTTC 4 cut(s) 127, 254, 500, 539
HpyCH4III ACNGT 2 cut(s) 209, 536
HpyCH4V TGCA 7 cut(s) 24, 224, 300, 407, 413, 440, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
Hsp92II CATG 2 cut(s) 28, 83
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 1 cut(s) 453
LpnPI CCDG 2 cut(s) 121, 255
Lsp1109I GCAGC 3 cut(s) 144, 424, 425
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 466
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 3 cut(s) 44, 285, 345
MluCI AATT 3 cut(s) 232, 338, 479
MnlI CCTC 2 cut(s) 424, 459
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 1 cut(s) 453
NlaIII CATG 2 cut(s) 28, 83
NmeAIII GCCGAG 1 cut(s) 424
NspI RCATGY 1 cut(s) 28
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 134, 415, 439
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 3 cut(s) 133, 414, 438
Sau3AI GATC 1 cut(s) 453
SetI ASST 8 cut(s) 95, 265, 294, 418, 439, 475, 501, 550
Sse9I AATT 3 cut(s) 232, 338, 479
SspI AATATT 2 cut(s) 184, 248
SspMI CTAG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 2 cut(s) 209, 536
TasI AATT 3 cut(s) 232, 338, 479
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseI GCWGC 3 cut(s) 132, 413, 437
TspDTI ATGAA 4 cut(s) 171, 227, 531, 558
XapI RAATTY 3 cut(s) 232, 338, 479
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.