Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0020445

Physical Location & Seq

Genomic Coordinates Reverse (-)

12468240 .. 12470520

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG141900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGTTGGATTCCCTGTTCTGGTAATTCCAACAGTAAAGCAAAGAAGAACAAGAAGAAAAGGAAGAATTCAACAGAGTTAGAGGAGAGGCCATTTGATCAGATCAAACCCACTTCAGAATTATTAAACTCAAACTCCTCTTTGAGTGTCAAAGAGTCTTCGAAAGATGGGGAACACATAGCAGCACAGACTTTTGTGTTCCGTGATTTGGCAGTTGCAACTAGAAATTTCAGAGCAGAATGTCTTTTGGGGGAGGGTGGCTTTGGTCGAGTATATAAAGGACATTTGGAAAGTATAAATCAGGCGAGACCTTTGTTCAAGGACCGGAAAAAATTTTCACAAATGGCAGACCCATCGTTACAAGGTCAGTATCCCGCAAGAGGATTATACCAAGCTCTGGCTGTTGCGGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCGGTTATAGCTGATGTTGTCACAGCTTTGACATACCTTGCTGCACAAAAGTATGATCCTGAAACACAGCCTCCCCAAAGCTCCCGTCTTGCCCCTTGTACTCCCCCTAGAACCAAGCGGGACAGCGAAAGGAAAGCTCAATGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

196

Amino Acids

21.99

Weight (kDa)

9.64

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020445)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g20860
rosa_multiflora	Rmu_co8356951.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042670
rosa_samantha	Rh3AG141900 Rh3CG163400 Rh5BG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	4 cut(s)	375, 407, 439, 559
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	3 cut(s)	67, 226, 332
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	4 cut(s)	20, 208, 380, 397
AgsI	TTSAA	2 cut(s)	72, 319
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	5 cut(s)	395, 452, 467, 522, 578
AluI	AGCT	5 cut(s)	395, 452, 467, 522, 578
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	89, 440
ApeKI	GCWGC	3 cut(s)	182, 427, 482
ApoI	RAATTY	3 cut(s)	67, 226, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspS9I	GGNCC	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	194, 439, 469
BccI	CCATC	2 cut(s)	161, 361
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	222, 549
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	5 cut(s)	183, 408, 428, 440, 483
BlsI	GCNGC	5 cut(s)	184, 409, 429, 441, 484
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 496, 526
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 208, 380, 397
Bse118I	RCCGGY	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	4 cut(s)	20, 208, 380, 397
BseMI	GCAATG	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	98, 127
BseX3I	CGGCCG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	194, 439, 469
BsgI	GTGCAG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	91, 442
BsiEI	CGRYCG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	325, 443
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	20, 208, 380, 397
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	91, 442
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	97, 102, 496
BspACI	CCGC	4 cut(s)	375, 407, 439, 559
BspANI	GGCC	2 cut(s)	91, 442
BspPI	GGATC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	442
BssAI	RCCGGY	1 cut(s)	442
BssMI	GATC	3 cut(s)	97, 102, 496
Bst4CI	ACNGT	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	161
BstKTI	GATC	3 cut(s)	100, 105, 499
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	97, 102, 496
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 436
BstV1I	GCAGC	3 cut(s)	194, 439, 469
BstV2I	GAAGAC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	91, 442
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	540
CviQI	GTAC	1 cut(s)	540
DpnI	GATC	3 cut(s)	99, 104, 498
DpnII	GATC	3 cut(s)	97, 102, 496
EaeI	YGGCCR	1 cut(s)	440
EagI	CGGCCG	1 cut(s)	440
EclXI	CGGCCG	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	322
Eco52I	CGGCCG	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	67
FaiI	YATR	9 cut(s)	179, 274, 276, 296, 388, 437, 449, 475, 495
FaqI	GGGAC	1 cut(s)	575
FauI	CCCGC	2 cut(s)	382, 552
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	183, 408, 428, 440, 483
Fsp4HI	GCNGC	5 cut(s)	183, 408, 428, 440, 483
FspBI	CTAG	2 cut(s)	222, 549
GluI	GCNGC	5 cut(s)	183, 408, 428, 440, 483
HaeIII	GGCC	2 cut(s)	91, 442
HapII	CCGG	2 cut(s)	325, 443
HinfI	GANTC	2 cut(s)	10, 155
HpaII	CCGG	2 cut(s)	325, 443
Hpy188I	TCNGA	3 cut(s)	102, 118, 233
Hpy188III	TCNNGA	2 cut(s)	422, 500
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	218, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 436
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	97, 102, 496
LmnI	GCTCC	2 cut(s)	424, 527
LpnPI	CCDG	8 cut(s)	6, 28, 287, 338, 383, 407, 456, 513
Lsp1109I	GCAGC	3 cut(s)	194, 439, 469
MaeI	CTAG	2 cut(s)	222, 549
MaeIII	GTNAC	2 cut(s)	357, 460
MalI	GATC	3 cut(s)	99, 104, 498
MboI	GATC	3 cut(s)	97, 102, 496
MboII	GAAGA	4 cut(s)	58, 67, 76, 150
MluCI	AATT	5 cut(s)	25, 67, 119, 226, 332
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	76, 81, 148, 247, 374, 522
MseI	TTAA	1 cut(s)	125
MspI	CCGG	2 cut(s)	325, 443
MwoI	GCNNNNNNNGC	2 cut(s)	407, 436
NdeII	GATC	3 cut(s)	97, 102, 496
NmuCI	GTSAC	1 cut(s)	460
NspV	TTCGAA	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	184, 409, 429, 441, 484
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	322
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	5 cut(s)	183, 408, 428, 440, 483
Sau3AI	GATC	3 cut(s)	97, 102, 496
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	164
SetI	ASST	8 cut(s)	313, 367, 397, 454, 469, 480, 524, 580
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	5 cut(s)	25, 67, 119, 226, 332
SsiI	CCGC	4 cut(s)	375, 407, 439, 559
SspMI	CTAG	2 cut(s)	222, 549
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	161, 268
TasI	AATT	5 cut(s)	25, 67, 119, 226, 332
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	2 cut(s)	410, 442
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	3 cut(s)	182, 427, 482
Tsp45I	GTSAC	1 cut(s)	460
TspGWI	ACGGA	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	3 cut(s)	67, 226, 332
XspI	CTAG	2 cut(s)	222, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.