Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367439.1

Orthogroup ID

OG0007126

Physical Location & Seq

Genomic Coordinates Reverse (-)

612 .. 1107

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 496 bp

tctcttctgtgacgagtggaagcatgcacttgaccgtgtccctgacacagtggcttcagaggctatcaagagcttcatcaatgttgtccacgtaatctccataaaacaaagtgaagagctgaagatcaaaaaaagaactgaagctgcatccaaggagcttgaaaagaaggcttcttctgtccggaacattgaaaagaagttctataattcctactccatggttggtattggacttcccgattcagggcctgataacgggcagggtttggatgctcgcgacccgcttgctgaaaagaaatctgaactcgcaacctcccagaggcgggttgaagaagaaatgagtaggcattcaaaggcagtggaggtgactagagcaatgactctaaacaaccttcaaacagggttgccaggggtttttcaagcactgaccagtttttctgggttatttacagaggcactcaattcagtttgtactagttcctactccatcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

164

Amino Acids

18.14

Weight (kDa)

7.93

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02110 AT3G60320
fragaria_vesca	FvH4_7g10170
malus_domestica	MD02G1212400.v1.1 MD07G1108500.v1.1 MD07G1108600.v1.1
prunus_persica	Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1
pyrus_communis	pycom02g17630 pycom07g09310
rosa_chinensis	RchiOBHm_Chr1g0347891
rosa_laevigata	RLG00000028706
rosa_multiflora	Rmu_co8367439.1_g000001 Rmu_ssc0000342.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307400
rosa_rugosa	Rorug01G0190300 Rorug01G0190400
rosa_samantha	Rh1AG208500 Rh1BG173100 Rh1CG192800 Rh1DG203000
rosa_wichuraiana	Rw1G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	2 cut(s)	282, 323
AcuI	CTGAAG	3 cut(s)	40, 141, 160
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	6 cut(s)	243, 244, 255, 319, 322, 323
AgsI	TTSAA	6 cut(s)	162, 192, 330, 352, 396, 420
AhlI	ACTAGT	1 cut(s)	474
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	4 cut(s)	73, 119, 144, 158
AluI	AGCT	4 cut(s)	73, 119, 144, 158
AlwNI	CAGNNNCTG	1 cut(s)	249
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	495
BcgI	CGANNNNNNTGC	2 cut(s)	267, 301
BciT130I	CCWGG	1 cut(s)	409
BcuI	ACTAGT	1 cut(s)	474
BfaI	CTAG	2 cut(s)	370, 475
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	156, 260
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	151, 217, 408
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	6 cut(s)	243, 244, 255, 319, 322, 323
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	382
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	3 cut(s)	151, 217, 408
BseGI	GGATG	2 cut(s)	147, 275
BseLI	CCNNNNNNNGG	6 cut(s)	243, 244, 255, 319, 322, 323
BseMI	GCAATG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	6 cut(s)	243, 244, 255, 319, 322, 323
BsmFI	GGGAC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	248
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	217
Bsp68I	TCGCGA	1 cut(s)	277
BspACI	CCGC	2 cut(s)	282, 323
BspANI	GGCC	1 cut(s)	248
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	151, 217, 408
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	151, 217
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	36, 50
Bst6I	CTCTTC	2 cut(s)	9, 109
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	25, 275, 286
BstDSI	CCRYGG	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	147, 275
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	147, 275
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	3 cut(s)	55, 364, 423
BtuMI	TCGCGA	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	25, 275, 286
CaiI	CAGNNNCTG	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	2 cut(s)	24, 218
CviJI	RGCY	8 cut(s)	54, 63, 73, 119, 144, 158, 171, 248
CviKI_1	RGCY	8 cut(s)	54, 63, 73, 119, 144, 158, 171, 248
CviQI	GTAC	1 cut(s)	472
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	9, 109
EarI	CTCTTC	2 cut(s)	9, 109
Eco130I	CCWWGG	2 cut(s)	151, 217
Eco57I	CTGAAG	3 cut(s)	40, 141, 160
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	151, 217
ErhI	CCWWGG	2 cut(s)	151, 217
FaeI	CATG	2 cut(s)	27, 221
FaiI	YATR	4 cut(s)	25, 102, 205, 219
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	23, 217
FauI	CCCGC	2 cut(s)	289, 316
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	134, 282
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	370, 475
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	27, 221
HinfI	GANTC	2 cut(s)	240, 380
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	59, 302
Hpy188III	TCNNGA	4 cut(s)	68, 182, 237, 276
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	161, 402
HpyCH4III	ACNGT	2 cut(s)	36, 50
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	27, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	27, 221
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	124
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	156, 260
MaeI	CTAG	2 cut(s)	370, 475
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	9, 365
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	5 cut(s)	126, 134, 166, 342, 345
MluCI	AATT	2 cut(s)	206, 461
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	5 cut(s)	53, 313, 323, 356, 446
MroI	TCCGGA	1 cut(s)	181
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	27, 221
NmuCI	GTSAC	2 cut(s)	9, 365
NruI	TCGCGA	1 cut(s)	277
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	36
RruI	TCGCGA	1 cut(s)	277
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SapI	GCTCTTC	1 cut(s)	109
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	409
SetI	ASST	8 cut(s)	75, 94, 121, 146, 160, 315, 367, 394
SfaNI	GCATC	2 cut(s)	156, 260
SpeI	ACTAGT	1 cut(s)	474
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	206, 461
SsiI	CCGC	2 cut(s)	282, 323
SspMI	CTAG	2 cut(s)	370, 475
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	2 cut(s)	151, 217
TaaI	ACNGT	2 cut(s)	36, 50
TaiI	ACGT	1 cut(s)	94
TasI	AATT	2 cut(s)	206, 461
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	240
TscAI	CASTG	3 cut(s)	55, 364, 430
TseFI	GTSAC	2 cut(s)	9, 365
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	9, 365
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	3 cut(s)	55, 364, 430
Tth111I	GACNNNGTC	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	317
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	370, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.