Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

26296710 .. 26298390

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGAGATCCTGCAAGCCAATCCTCCTCATCAGATCCCACGATTGAATTGTGTGGCGATGAATTCTGGCCACTTTCAGGGAAACCTTTCTTTGACATCATCCTCGCAAAATCACATGTCAACCCCAAATGTCAAATGTCGATCCCATCCAAACTACATCCACTACTACTGTCCTGTTCAGTCCCTGTGGTTCTCACTTTTGGGGGCAAGACTTGGGAAATGACATGCAATACAGCAAACAACGCTCAGAAGTTCTTTGATAGACCGTCGTGGAAAGCATTCGTTGACGACAACAATCTGAAGGTCGGAGATGGGTGTGTGTTCGAACTTATGGAGTGCAGCAGCACAAAGCTGGTATTTAGAGTCCAAATTCTCAGAGGTGAAATCCCAGCTCAACTTCTAGACAAGGTCAGCGGTGAAAATGCAGAGAAACCCCTTGTGATTCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0061458 GO:0070085 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990714

KEGG Pathways

Metabolic & Signaling

ko00532 ko00534 ko01100 map00532 map00534 map01100

Pfam Domains

Protein Families

Galactosyl_T

Protein Analysis

150

Amino Acids

16.51

Weight (kDa)

5.15

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	31 - 122	5.7e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	3 cut(s)	2, 29, 136
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	62, 369
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	2 cut(s)	352, 392
AluI	AGCT	2 cut(s)	352, 392
AlwI	GGATC	3 cut(s)	2, 29, 136
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	339, 342
ApoI	RAATTY	2 cut(s)	62, 369
Asp700I	GAANNNNTTC	2 cut(s)	86, 278
AsuHPI	GGTGA	2 cut(s)	392, 428
AsuII	TTCGAA	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	351, 354
BccI	CCATC	2 cut(s)	154, 305
BfaI	CTAG	1 cut(s)	401
BisI	GCNGC	2 cut(s)	340, 343
BlsI	GCNGC	2 cut(s)	341, 344
Bpu14I	TTCGAA	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	99, 146, 157
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	260, 388
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	351, 354
BseYI	CCCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	7, 34, 141
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	259, 387
BspPI	GGATC	3 cut(s)	2, 29, 136
BspT104I	TTCGAA	1 cut(s)	324
BssMI	GATC	3 cut(s)	7, 34, 141
Bst4CI	ACNGT	2 cut(s)	171, 267
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	246, 374
BstF5I	GGATG	3 cut(s)	99, 146, 157
BstKTI	GATC	3 cut(s)	10, 37, 144
BstMBI	GATC	3 cut(s)	7, 34, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	119, 228
BstV1I	GCAGC	2 cut(s)	351, 354
BstX2I	RGATCY	2 cut(s)	7, 34
BstYI	RGATCY	2 cut(s)	7, 34
BsuRI	GGCC	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	99, 146, 157
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	185
CviAII	CATG	2 cut(s)	116, 225
CviJI	RGCY	4 cut(s)	18, 70, 352, 392
CviKI_1	RGCY	4 cut(s)	18, 70, 352, 392
DdeI	CTNAG	2 cut(s)	246, 374
DpnI	GATC	3 cut(s)	9, 36, 143
DpnII	GATC	3 cut(s)	7, 34, 141
EaeI	YGGCCR	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	62
FaeI	CATG	2 cut(s)	119, 228
FaiI	YATR	3 cut(s)	117, 226, 332
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	115, 224
Fnu4HI	GCNGC	2 cut(s)	340, 343
FokI	GGATG	3 cut(s)	86, 133, 144
Fsp4HI	GCNGC	2 cut(s)	340, 343
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	340, 343
GsaI	CCCAGC	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	119, 228
HincII	GTYRAC	2 cut(s)	121, 286
HindII	GTYRAC	2 cut(s)	121, 286
HinfI	GANTC	2 cut(s)	363, 442
HphI	GGTGA	2 cut(s)	392, 428
Hpy166II	GTNNAC	2 cut(s)	121, 286
Hpy188I	TCNGA	5 cut(s)	34, 249, 300, 308, 377
Hpy188III	TCNNGA	2 cut(s)	401, 446
Hpy8I	GTNNAC	2 cut(s)	121, 286
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	171, 267
HpyCH4V	TGCA	4 cut(s)	14, 228, 339, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	246, 374
Hsp92II	CATG	2 cut(s)	119, 228
Kzo9I	GATC	3 cut(s)	7, 34, 141
LpnPI	CCDG	7 cut(s)	24, 52, 63, 187, 198, 338, 402
Lsp1109I	GCAGC	2 cut(s)	351, 354
MaeI	CTAG	1 cut(s)	401
MalI	GATC	3 cut(s)	9, 36, 143
MboI	GATC	3 cut(s)	7, 34, 141
MflI	RGATCY	2 cut(s)	7, 34
MlsI	TGGCCA	1 cut(s)	70
MluCI	AATT	3 cut(s)	47, 62, 369
MluNI	TGGCCA	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	34, 37, 113, 371
Mox20I	TGGCCA	1 cut(s)	70
MroXI	GAANNNNTTC	2 cut(s)	86, 278
MscI	TGGCCA	1 cut(s)	70
Msp20I	TGGCCA	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	3 cut(s)	7, 34, 141
NlaIII	CATG	2 cut(s)	119, 228
NspI	RCATGY	2 cut(s)	119, 228
NspV	TTCGAA	1 cut(s)	324
PciI	ACATGT	1 cut(s)	115
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	2 cut(s)	86, 278
PfeI	GAWTC	1 cut(s)	442
PflFI	GACNNNGTC	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	341, 344
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PscI	ACATGT	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	7, 34
PsyI	GACNNNGTC	1 cut(s)	407
SatI	GCNGC	2 cut(s)	340, 343
Sau3AI	GATC	3 cut(s)	7, 34, 141
SchI	GAGTC	1 cut(s)	372
SetI	ASST	6 cut(s)	88, 306, 354, 382, 394, 411
SfuI	TTCGAA	1 cut(s)	324
Sse9I	AATT	3 cut(s)	47, 62, 369
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	171, 267
TaqI	TCGA	2 cut(s)	140, 324
TasI	AATT	3 cut(s)	47, 62, 369
TfiI	GAWTC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	339, 342
TspDTI	ATGAA	1 cut(s)	75
Tth111I	GACNNNGTC	1 cut(s)	407
XapI	RAATTY	2 cut(s)	62, 369
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	2 cut(s)	119, 228
XmnI	GAANNNNTTC	2 cut(s)	86, 278
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.