Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8098638.1

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 392

Gene Structure 392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8098638.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

caggaatcaatcactgagactaaaaaccaagagaatggagtcgtaattgaaaaagtggagagctccaattgcttagttaatgaattggattctactgaaaggaacactgatactcaaatttcaaaggattctgagctcccacccaaagtcgaagacgattctgtgttgacatcgcttccagagcccaaaggtgttatcgaagaggatatagaaccagttctgaatggtgaaccttcatcttcaagagataccttgatatggaaggaagaagattctgatgccccaaacggtacgtttagtctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

101

Amino Acids

11.12

Weight (kDa)

4.05

Isoelectric Point (pI)

72.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	50, 123, 243
AluBI	AGCT	2 cut(s)	63, 136
AluI	AGCT	2 cut(s)	63, 136
Alw21I	GWGCWC	2 cut(s)	65, 138
Alw26I	GTCTC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	239
BanII	GRGCYC	3 cut(s)	65, 138, 186
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	65, 138
BcoDI	GTCTC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	6, 123
BseNI	ACTGG	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	65, 138
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	65, 138, 186
BspCNI	CTCAG	2 cut(s)	7, 124
BsrI	ACTGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	3 cut(s)	15, 73, 132
BstMAI	GTCTC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 181
BstSFI	CTRYAG	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	35
BtgZI	GCGATG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	12, 105
Csp6I	GTAC	1 cut(s)	291
CviJI	RGCY	3 cut(s)	63, 136, 184
CviKI_1	RGCY	3 cut(s)	63, 136, 184
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	3 cut(s)	15, 73, 132
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	2 cut(s)	63, 136
Eco24I	GRGCYC	3 cut(s)	65, 138, 186
Eco53kI	GAGCTC	2 cut(s)	63, 136
EcoICRI	GAGCTC	2 cut(s)	63, 136
EcoT38I	GRGCYC	3 cut(s)	65, 138, 186
FaiI	YATR	2 cut(s)	209, 259
FriOI	GRGCYC	3 cut(s)	65, 138, 186
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	6 cut(s)	5, 39, 89, 128, 158, 272
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	168, 230
Hpy188I	TCNGA	3 cut(s)	133, 222, 277
Hpy188III	TCNNGA	2 cut(s)	179, 243
Hpy8I	GTNNAC	2 cut(s)	168, 230
HpyAV	CCTTC	2 cut(s)	243, 256
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 181
HpyF3I	CTNAG	3 cut(s)	15, 73, 132
HpySE526I	ACGT	1 cut(s)	293
LmnI	GCTCC	2 cut(s)	68, 141
LpnPI	CCDG	2 cut(s)	192, 228
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	293
MboII	GAAGA	5 cut(s)	164, 212, 231, 278, 281
MfeI	CAATTG	1 cut(s)	67
MhlI	GDGCHC	3 cut(s)	65, 138, 186
MluCI	AATT	4 cut(s)	45, 67, 83, 117
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	78
MunI	CAATTG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	69, 181
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	5 cut(s)	5, 89, 128, 158, 272
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp124BI	GAGCTC	2 cut(s)	65, 138
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SacI	GAGCTC	2 cut(s)	65, 138
SaqAI	TTAA	1 cut(s)	78
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	3 cut(s)	65, 138, 186
SetI	ASST	6 cut(s)	65, 138, 193, 235, 254, 296
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	302
SgeI	CNNG	6 cut(s)	14, 41, 191, 227, 255, 265
Sse9I	AATT	4 cut(s)	45, 67, 83, 117
SstI	GAGCTC	2 cut(s)	65, 138
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	150, 198
TasI	AATT	4 cut(s)	45, 67, 83, 117
TfiI	GAWTC	5 cut(s)	5, 89, 128, 158, 272
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	19, 112
TspDTI	ATGAA	2 cut(s)	96, 225
TspRI	CASTG	2 cut(s)	19, 112
XapI	RAATTY	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.