Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

64528703 .. 64537009

Gene Structure 8307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCATGGCTGTGGCCTCCTCCTCCCTGGACAGGATCGAAGTCACGCCGCAGCACCTCGTCATCGAGCCCTCGCCGTCCAGATCCTCCACCGACTTCGACGCCACCTCGTCCTCACTGTTCGTCTCCTGCTCCGCCGACACATCTGTTTGCTTCTCCCAACGCCAATCAGATCCTCCCCGCCTCGTCTTCACTGTTCGTCAGCTCAGGGCACTCATCAGATGCAAGGAAGGCGCTCTGGATGTGAAGCCATTTGTAGATGCAAGGCCAGCAGTACAGATGGCCACAGAGAGTGACCACTGGCTCGTGTGCAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

6.05

Isoelectric Point (pI)

66.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 135, 181
AclWI	GGATC	3 cut(s)	44, 78, 167
AcoI	YGGCCR	2 cut(s)	3, 282
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	44, 78, 167
AoxI	GGCC	4 cut(s)	3, 15, 266, 282
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	214
BalI	TGGCCA	2 cut(s)	5, 284
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	2 cut(s)	50, 53
BlsI	GCNGC	2 cut(s)	51, 54
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	212, 250
BpiI	GAAGAC	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	6, 27
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	6, 27
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	10, 13
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	4 cut(s)	5, 17, 268, 284
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsnI	GGCC	4 cut(s)	5, 17, 268, 284
Bsp1286I	GDGCHC	2 cut(s)	72, 214
Bsp143I	GATC	3 cut(s)	36, 83, 172
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	50, 135, 181
BspANI	GGCC	4 cut(s)	5, 17, 268, 284
BspCNI	CTCAG	1 cut(s)	219
BspPI	GGATC	3 cut(s)	44, 78, 167
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	6, 27
BssMI	GATC	3 cut(s)	36, 83, 172
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	120, 196
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	39, 86, 175
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	36, 83, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 269
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	83, 172
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	2 cut(s)	83, 172
BsuRI	GGCC	4 cut(s)	5, 17, 268, 284
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	3 cut(s)	116, 192, 298
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	236
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	5, 11, 17, 70, 205, 250, 268, 284, 304
CviKI_1	RGCY	9 cut(s)	5, 11, 17, 70, 205, 250, 268, 284, 304
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	3 cut(s)	38, 85, 174
DpnII	GATC	3 cut(s)	36, 83, 172
EaeI	YGGCCR	2 cut(s)	3, 282
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	1 cut(s)	10
FaiI	YATR	1 cut(s)	8
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	50, 53
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	50, 53
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	50, 53
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	5, 17, 268, 284
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
Hpy188I	TCNGA	3 cut(s)	172, 221, 320
Hpy188III	TCNNGA	2 cut(s)	81, 239
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	120, 196
HpyCH4V	TGCA	3 cut(s)	225, 263, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 269
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	36, 83, 172
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	9 cut(s)	14, 19, 41, 94, 142, 193, 224, 282, 286
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	212, 250
MaeIII	GTNAC	2 cut(s)	43, 293
MalI	GATC	3 cut(s)	38, 85, 174
MboI	GATC	3 cut(s)	36, 83, 172
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	2 cut(s)	83, 172
MhlI	GDGCHC	2 cut(s)	72, 214
MlsI	TGGCCA	2 cut(s)	5, 284
MluNI	TGGCCA	2 cut(s)	5, 284
Mox20I	TGGCCA	2 cut(s)	5, 284
MscI	TGGCCA	2 cut(s)	5, 284
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	2 cut(s)	5, 284
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	231, 269
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	36, 83, 172
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	2 cut(s)	43, 293
PkrI	GCNGC	2 cut(s)	51, 54
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	83, 172
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	2 cut(s)	50, 53
Sau3AI	GATC	3 cut(s)	36, 83, 172
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	72, 214
SetI	ASST	3 cut(s)	60, 110, 207
SfaNI	GCATC	2 cut(s)	212, 250
SmiMI	CAYNNNNRTG	1 cut(s)	11
SsiI	CCGC	3 cut(s)	50, 135, 181
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	120, 196
TaqI	TCGA	3 cut(s)	39, 66, 99
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	52
TscAI	CASTG	3 cut(s)	123, 199, 305
TseFI	GTSAC	2 cut(s)	43, 293
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	2 cut(s)	43, 293
TspRI	CASTG	3 cut(s)	123, 199, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.