Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000342.1

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Reverse (-)

98774 .. 100178

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000342.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgaccgacgacgaaggaatgaagctcaaaggctacaatggaaagatagtgcagtctaccttggaagaatgtcgggaggtttttgctacctggataaacatggcacatgaattgttgaagacaaagaaccttgagaaacaagcagagagtattcgcatggttagcatggttcagaaatgtgaagttcatcctacagaggaagcagagacggttcagtcttctgaaaagttttacgagcctagtgataggatacaacagatatctgcatccataaaccctaagcacaaagttagcagtctatttcaagaaagtccgagtatttactccctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

110

Amino Acids

12.6

Weight (kDa)

5.38

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	118, 305
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	200
BbsI	GAAGAC	2 cut(s)	125, 210
BciT130I	CCWGG	1 cut(s)	91
BciVI	GTATCC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	275
BpiI	GAAGAC	2 cut(s)	125, 210
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	187, 266
BsgI	GTGCAG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	200
BsmBI	CGTCTC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	187, 266
BstMAI	GTCTC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	192
BstV2I	GAAGAC	2 cut(s)	125, 210
BsuI	GTATCC	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	187, 266
CviAII	CATG	4 cut(s)	100, 107, 157, 166
CviJI	RGCY	3 cut(s)	25, 33, 238
CviKI_1	RGCY	3 cut(s)	25, 33, 238
DdeI	CTNAG	1 cut(s)	279
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	4 cut(s)	103, 110, 160, 169
FaiI	YATR	5 cut(s)	101, 108, 158, 167, 272
FatI	CATG	4 cut(s)	99, 106, 156, 165
FblI	GTMKAC	1 cut(s)	56
FokI	GGATG	2 cut(s)	174, 253
FspBI	CTAG	1 cut(s)	240
Hin1II	CATG	4 cut(s)	103, 110, 160, 169
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	174, 223, 315
Hpy188III	TCNNGA	2 cut(s)	74, 305
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	52, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	103, 110, 160, 169
LpnPI	CCDG	2 cut(s)	76, 103
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	240
MboII	GAAGA	3 cut(s)	77, 130, 210
MluCI	AATT	1 cut(s)	110
MnlI	CCTC	2 cut(s)	70, 190
MseI	TTAA	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	162
NlaIII	CATG	4 cut(s)	103, 110, 160, 169
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	5 cut(s)	27, 62, 81, 92, 132
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	110
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	211
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	35, 123, 176
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.