Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000342.1

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

96197 .. 98697

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000342.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgaaaaataatgtttgtgttgtcataaaggtgcaaaatttggtagctgtaaggagctccagaaatttcgatcatttagttattgagacatcacaagagatcaacgatgtgccttatggagattatttccgggttgaggggctttggaaggtggtgagagatactgatggatcaaaggaatgctgcaatttgaagatttacttgaatgtggcattttcaaaaagaactgtttggaaaggaaagatagtgcagtctaccttggaagaatgtcgggaggtttttgctacctggataaacatggcacatgaattgttgaagacaaagaaccttgagaaacaagcagagagtattcgcacggttagcatggttcagaaatgtgaagttcatcctacagaggaagcagagacggttcagtcttctgaaaagttttacgagcctagtgataggatacaacagatatctgcatccataaaccctaagcacaaagttagcagtctattccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

168

Amino Acids

19.37

Weight (kDa)

7.63

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	37, 64
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	193, 205, 219, 316
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	47, 57
AluI	AGCT	2 cut(s)	47, 57
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	80, 398
AlwI	GGATC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	2 cut(s)	37, 64
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	323, 408
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	80, 398
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	131, 289
BmrFI	CCNGG	2 cut(s)	131, 289
BmsI	GCATC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	323, 408
BpmI	CTGGAG	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	385, 464
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	80, 398
BsmBI	CGTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	70, 99, 170
BspPI	GGATC	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	70, 99, 170
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	229, 358, 409
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	385, 464
BstKTI	GATC	3 cut(s)	73, 102, 173
BstMAI	GTCTC	2 cut(s)	80, 398
BstMBI	GATC	3 cut(s)	70, 99, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	129, 287
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	2 cut(s)	323, 408
BsuI	GTATCC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	385, 464
CviAII	CATG	3 cut(s)	298, 305, 364
CviJI	RGCY	4 cut(s)	47, 57, 142, 436
CviKI_1	RGCY	4 cut(s)	47, 57, 142, 436
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	3 cut(s)	72, 101, 172
DpnII	GATC	3 cut(s)	70, 99, 170
DrdI	GACNNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	301, 308, 367
FaiI	YATR	6 cut(s)	26, 117, 299, 306, 365, 470
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	3 cut(s)	297, 304, 363
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	184
FokI	GGATG	2 cut(s)	372, 451
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	1 cut(s)	184
GsuI	CTGGAG	1 cut(s)	43
HapII	CCGG	1 cut(s)	130
Hin1II	CATG	3 cut(s)	301, 308, 367
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	372, 421
Hpy188III	TCNNGA	2 cut(s)	60, 272
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	229, 358, 409
HpyCH4V	TGCA	4 cut(s)	34, 186, 250, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	301, 308, 367
Kzo9I	GATC	3 cut(s)	70, 99, 170
LmnI	GCTCC	2 cut(s)	54, 62
LpnPI	CCDG	4 cut(s)	73, 143, 274, 301
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	1 cut(s)	438
MalI	GATC	3 cut(s)	72, 101, 172
MboI	GATC	3 cut(s)	70, 99, 170
MboII	GAAGA	4 cut(s)	205, 275, 328, 408
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	4 cut(s)	37, 64, 187, 308
MnlI	CCTC	3 cut(s)	130, 268, 388
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	131, 289
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	70, 99, 170
NlaIII	CATG	3 cut(s)	301, 308, 367
PctI	GAATGC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	59
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	3 cut(s)	70, 99, 170
ScrFI	CCNGG	2 cut(s)	131, 289
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	8 cut(s)	33, 49, 59, 153, 260, 279, 290, 330
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	37, 64, 187, 308
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	129, 287
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	229, 358, 409
TaqI	TCGA	1 cut(s)	69
TasI	AATT	4 cut(s)	37, 64, 187, 308
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	17, 321, 374
XapI	RAATTY	2 cut(s)	37, 64
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.