Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

39632548 .. 39640726

Gene Structure 8179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG208900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCCGTGGCCTCCGCCTCCCCCGACAGGATCCCAGTCACGCCCCAGCAGCAGCAGCACCCCGTCATCGAGCCCTCGCCGTCCAGATTCTCCACCGACTCCGACGCCGCCTCGTCCTCACCGCTCGTCTCCTGCTCCGCCGACACACCTGATCGCACCGATCCTTCCTTTGCTTCTCCCAACGCCGATCAGTCTGCTGCAAGATTGAAGAGTGAAGAGTATCGGCAGTTGTTTCGGCTTCCAGCTGAAGAAATAAAGGTTGAAGATTTCTTTAGTTTCTTTTACTCAGATGATGTGTTCATCGAATCATTCCATAACAGTTGTGGAGATAAAGAGTTCAGCTGCACTTCATGGCAGCCTCATGAAAAGTTTGGACATACCCGCGATGTTTCATTTCAGCATCCAATTAAAATCTACTTTGGTGCAAAATTTGGTAGCTGTAAGGAGCTCCAGAAATTTCGAGTACACAGAAACAGTCATTTAGTTATTGAGACATCACAAGAGATCAACGATGTGCCTTATGGAGATTATTTCCGGGTTGAGGGGCTTTGGATGGTGGTGAGAGATACTGATGGATCAAAGGAATGCTGCAATTTGAAGATTTACTTGAATGTGGCATTTTCAAAAAGAACTGTTTGGAAAGGAAAGATAGTGCAGTCTACATTGGAAGAATGTCGAGAGGTTTTTGCTACCTGGATAAACATGGCACATGAATTGTTGAAGACAAAGAACCTTGAGAAACAAGCAGAGAGTATTCGCACGGTTAGCATGGTTCAGAAATGTGAAGTTCATCCTACAGAGGAAGCAGAGACGGTTCAGTCTTCTGAAAAGTTTTACGAGCCTAGTGATAGGATACAACAGATATCTGCATCCATAAACCCTAAGCACAAAGTTAGCAGTCTATTTCAAGAAAGTCCGAGTGATACTTACGCTCTTACCTCATGGTTGAGAGATTATATGATGAAATTTGGTTCATCCTTGAGGAATCAAAGCCATCTTCCATTGATCATAGTTATCATTGTTGCCGTGGTTTTCATAATGCAGTTGAGCATACTTGCACTACTAGCTAGACCCCAACACATCCATGTGCACTCTCCTGTGGACTATACCAGTGTCGTGGGCAGTGGTGTTGGTGGGAGATCTTCTGAAGTTATTACTTGGCTGGAGAAGCGAGTTCACAACCTTAAAGACGAGATGAACTTGGTTGAAGCTCGGCTTGAGAGCATGCGACATGAACATGCTCTCCTAAAAGCTCAACTTGAAGATTTCAAGCATCTTATTAAGCGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

430

Amino Acids

49.09

Weight (kDa)

6.32

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VASt	PF16016	85 - 223	1.1e-32	VAD1 Analog of StAR-related lipid transfer domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	659
AccII	CGCG	1 cut(s)	384
AciI	CCGC	5 cut(s)	15, 108, 122, 138, 382
AclWI	GGATC	4 cut(s)	25, 38, 155, 583
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	428, 455, 965
AcuI	CTGAAG	2 cut(s)	267, 1167
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	27, 541
AjnI	CCWGG	1 cut(s)	692
AloI	GAACNNNNNNTCC	2 cut(s)	1227, 1259
AluBI	AGCT	7 cut(s)	245, 342, 438, 448, 1067, 1211, 1253
AluI	AGCT	7 cut(s)	245, 342, 438, 448, 1067, 1211, 1253
Alw21I	GWGCWC	2 cut(s)	450, 1092
Alw26I	GTCTC	3 cut(s)	133, 485, 803
Alw44I	GTGCAC	1 cut(s)	1088
AlwI	GGATC	4 cut(s)	25, 38, 155, 583
AoxI	GGCC	2 cut(s)	3, 9
ApaLI	GTGCAC	1 cut(s)	1088
ApeKI	GCWGC	7 cut(s)	49, 52, 55, 197, 342, 355, 588
ApoI	RAATTY	3 cut(s)	428, 455, 965
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	111, 571
BaeGI	GKGCMC	1 cut(s)	1092
BamHI	GGATCC	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	75, 450
BbsI	GAAGAC	2 cut(s)	728, 813
Bbv12I	GWGCWC	2 cut(s)	450, 1092
BbvI	GCAGC	7 cut(s)	61, 64, 67, 184, 329, 367, 575
BccI	CCATC	3 cut(s)	547, 566, 1002
BceAI	ACGGC	2 cut(s)	64, 1010
BcgI	CGANNNNNNTGC	4 cut(s)	176, 210, 215, 249
BciT130I	CCWGG	1 cut(s)	694
BciVI	GTATCC	1 cut(s)	846
BclI	TGATCA	1 cut(s)	1005
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	133, 485, 803
BfaI	CTAG	3 cut(s)	843, 1064, 1068
BfmI	CTRYAG	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	846
BglII	AGATCT	1 cut(s)	1139
BisI	GCNGC	8 cut(s)	50, 53, 56, 108, 198, 343, 356, 589
BlsI	GCNGC	8 cut(s)	51, 54, 57, 109, 199, 344, 357, 590
Bme1390I	CCNGG	2 cut(s)	536, 694
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	536, 694
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	409, 878, 1282
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	2 cut(s)	728, 813
BpmI	CTGGAG	2 cut(s)	434, 1184
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	3 cut(s)	755, 1000, 1238
BpuMI	CCSGG	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	6, 1026
BsaXI	ACNNNNNCTCC	2 cut(s)	1227, 1257
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 541
Bse1I	ACTGG	2 cut(s)	35, 1110
BseBI	CCWGG	1 cut(s)	694
BseDI	CCNNGG	2 cut(s)	6, 1026
BseGI	GGATG	6 cut(s)	400, 558, 790, 869, 974, 1080
BseLI	CCNNNNNNNGG	2 cut(s)	27, 541
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	35, 1110
BseSI	GKGCMC	1 cut(s)	1092
BseXI	GCAGC	7 cut(s)	61, 64, 67, 184, 329, 367, 575
BseYI	CCCAGC	1 cut(s)	45
BsgI	GTGCAG	2 cut(s)	328, 674
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	5, 11
BsiHKAI	GWGCWC	2 cut(s)	450, 1092
BsiSI	CCGG	1 cut(s)	535
BslI	CCNNNNNNNGG	2 cut(s)	27, 541
BsmAI	GTCTC	3 cut(s)	133, 485, 803
BsmBI	CGTCTC	2 cut(s)	133, 803
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	5, 11
Bsp1286I	GDGCHC	3 cut(s)	75, 450, 1092
Bsp143I	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
BspACI	CCGC	5 cut(s)	15, 108, 122, 138, 382
BspANI	GGCC	2 cut(s)	5, 11
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	4 cut(s)	25, 38, 155, 583
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	35, 1110
BssECI	CCNNGG	2 cut(s)	6, 1026
BssMI	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	694
Bst4CI	ACNGT	5 cut(s)	320, 476, 634, 763, 814
Bst6I	CTCTTC	2 cut(s)	203, 210
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	1226
BstDEI	CTNAG	2 cut(s)	286, 882
BstDSI	CCRYGG	2 cut(s)	6, 1026
BstF5I	GGATG	6 cut(s)	400, 558, 790, 869, 974, 1080
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	8 cut(s)	33, 154, 163, 190, 507, 578, 1008, 1142
BstMAI	GTCTC	3 cut(s)	133, 485, 803
BstMBI	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 55, 765, 1064, 1168
BstNI	CCWGG	1 cut(s)	694
BstNSI	RCATGY	2 cut(s)	1228, 1241
BstSCI	CCNGG	2 cut(s)	534, 692
BstSFI	CTRYAG	1 cut(s)	795
BstSLI	GKGCMC	1 cut(s)	1092
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	7 cut(s)	61, 64, 67, 184, 329, 367, 575
BstV2I	GAAGAC	2 cut(s)	728, 813
BstX2I	RGATCY	2 cut(s)	30, 1139
BstXI	CCANNNNNNTGG	1 cut(s)	1117
BstYI	RGATCY	2 cut(s)	30, 1139
BsuI	GTATCC	1 cut(s)	846
BsuRI	GGCC	2 cut(s)	5, 11
BtgI	CCRYGG	2 cut(s)	6, 1026
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	6 cut(s)	400, 558, 790, 869, 974, 1080
BtsI	GCAGTG	1 cut(s)	1129
BtsIMutI	CAGTG	2 cut(s)	1117, 1129
Cac8I	GCNNGC	1 cut(s)	1226
CciI	TCATGA	1 cut(s)	361
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	464
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	2 cut(s)	286, 882
DpnI	GATC	8 cut(s)	32, 153, 162, 189, 506, 577, 1007, 1141
DpnII	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
DrdI	GACNNNNNNGTC	1 cut(s)	817
DseDI	GACNNNNNNGTC	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	203, 210
EarI	CTCTTC	2 cut(s)	203, 210
EciI	GGCGGA	2 cut(s)	4, 127
Ecl136II	GAGCTC	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	75, 450
Eco32I	GATATC	1 cut(s)	864
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	267, 1167
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	692
EcoRV	GATATC	1 cut(s)	864
EcoT38I	GRGCYC	2 cut(s)	75, 450
Esp3I	CGTCTC	2 cut(s)	133, 803
FalI	AAGNNNNNCTT	6 cut(s)	590, 622, 1200, 1232, 1242, 1274
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	1005
FblI	GTMKAC	1 cut(s)	659
Fnu4HI	GCNGC	8 cut(s)	50, 53, 56, 108, 198, 343, 356, 589
FokI	GGATG	6 cut(s)	387, 565, 777, 856, 961, 1067
FriOI	GRGCYC	2 cut(s)	75, 450
Fsp4HI	GCNGC	8 cut(s)	50, 53, 56, 108, 198, 343, 356, 589
FspBI	CTAG	3 cut(s)	843, 1064, 1068
GluI	GCNGC	8 cut(s)	50, 53, 56, 108, 198, 343, 356, 589
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	2 cut(s)	434, 1184
HaeIII	GGCC	2 cut(s)	5, 11
HapII	CCGG	1 cut(s)	535
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	105
HinfI	GANTC	4 cut(s)	87, 98, 305, 985
HpaII	CCGG	1 cut(s)	535
HphI	GGTGA	2 cut(s)	111, 571
Hpy166II	GTNNAC	5 cut(s)	466, 660, 1090, 1102, 1177
Hpy188I	TCNGA	6 cut(s)	103, 289, 777, 826, 918, 1147
Hpy188III	TCNNGA	5 cut(s)	84, 362, 451, 677, 908
Hpy8I	GTNNAC	5 cut(s)	466, 660, 1090, 1102, 1177
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	5 cut(s)	320, 476, 634, 763, 814
HpyCH4V	TGCA	9 cut(s)	200, 345, 425, 591, 655, 869, 1042, 1058, 1090
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 55, 765, 1064, 1168
HpyF3I	CTNAG	2 cut(s)	286, 882
Hsp92I	GRCGYC	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	1005
Kzo9I	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
LmnI	GCTCC	3 cut(s)	140, 445, 453
Lsp1109I	GCAGC	7 cut(s)	61, 64, 67, 184, 329, 367, 575
LweI	GCATC	3 cut(s)	409, 878, 1282
MaeI	CTAG	3 cut(s)	843, 1064, 1068
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	8 cut(s)	32, 153, 162, 189, 506, 577, 1007, 1141
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
MflI	RGATCY	2 cut(s)	30, 1139
MhlI	GDGCHC	3 cut(s)	75, 450, 1092
MluCI	AATT	6 cut(s)	405, 428, 455, 592, 713, 965
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	126
MseI	TTAA	3 cut(s)	408, 1185, 1281
MslI	CAYNNNNRTG	3 cut(s)	1083, 1085, 1236
MspA1I	CMGCKG	2 cut(s)	245, 342
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	536, 694
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	694
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	5 cut(s)	49, 55, 765, 1064, 1168
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	2 cut(s)	1228, 1241
PaeI	GCATGC	1 cut(s)	1228
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	87, 305, 985
PkrI	GCNGC	8 cut(s)	51, 54, 57, 109, 199, 344, 357, 590
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	692
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	692
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	30, 1139
PvuII	CAGCTG	2 cut(s)	245, 342
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	3 cut(s)	1083, 1085, 1236
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	408, 1185, 1281
SatI	GCNGC	8 cut(s)	50, 53, 56, 108, 198, 343, 356, 589
Sau3AI	GATC	8 cut(s)	30, 151, 160, 187, 504, 575, 1005, 1139
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	536, 694
SduI	GDGCHC	3 cut(s)	75, 450, 1092
SfaNI	GCATC	3 cut(s)	409, 878, 1282
SfcI	CTRYAG	1 cut(s)	795
SmiMI	CAYNNNNRTG	3 cut(s)	1083, 1085, 1236
SmlI	CTYRAG	3 cut(s)	734, 979, 1217
SmoI	CTYRAG	3 cut(s)	734, 979, 1217
SphI	GCATGC	1 cut(s)	1228
Sse9I	AATT	6 cut(s)	405, 428, 455, 592, 713, 965
SsiI	CCGC	5 cut(s)	15, 108, 122, 138, 382
SspMI	CTAG	3 cut(s)	843, 1064, 1068
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	534, 692
TaaI	ACNGT	5 cut(s)	320, 476, 634, 763, 814
TaqI	TCGA	4 cut(s)	69, 303, 460, 676
TasI	AATT	6 cut(s)	405, 428, 455, 592, 713, 965
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	87, 305, 985
Tru1I	TTAA	3 cut(s)	408, 1185, 1281
Tru9I	TTAA	3 cut(s)	408, 1185, 1281
TscAI	CASTG	2 cut(s)	1117, 1129
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	7 cut(s)	49, 52, 55, 197, 342, 355, 588
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	2 cut(s)	1117, 1129
VneI	GTGCAC	1 cut(s)	1088
XapI	RAATTY	3 cut(s)	428, 455, 965
XceI	RCATGY	2 cut(s)	1228, 1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	659
XspI	CTAG	3 cut(s)	843, 1064, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.