Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000342.1

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

79449 .. 80812

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000342.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggccgtggcctccgcctcccccgacaggatcccagtcacgccccagcagcagcagcagcagcagcaccccgtcatcgagccctcgccgtccagattctccaccgactccgacgccgcctcgtcctcaccgctcgtctcctgctccgccgacacacctgatcgcaccgatccttcctttgcttctcccaacaccgatcagtctgctgcaagattgaagagtgaagagtatcggcagttgtttcggcttccagctgaagaagccctcatcgaagatttcaattgtgcattccaggagaatatacttattcaggtgaatttaatatatctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

4.31

Isoelectric Point (pI)

83.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	133
AciI	CCGC	4 cut(s)	15, 117, 131, 147
AclWI	GGATC	3 cut(s)	25, 38, 164
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	217, 280
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	3 cut(s)	25, 38, 164
AoxI	GGCC	2 cut(s)	3, 9
ApeKI	GCWGC	7 cut(s)	49, 52, 55, 58, 61, 64, 206
ApoI	RAATTY	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	120, 325
BamHI	GGATCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	84
BbvI	GCAGC	7 cut(s)	61, 64, 67, 70, 73, 76, 193
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	4 cut(s)	185, 219, 224, 258
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	8 cut(s)	50, 53, 56, 59, 62, 65, 117, 207
BlsI	GCNGC	8 cut(s)	51, 54, 57, 60, 63, 66, 118, 208
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	7 cut(s)	61, 64, 67, 70, 73, 76, 193
BseYI	CCCAGC	1 cut(s)	45
BshFI	GGCC	2 cut(s)	5, 11
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	5, 11
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	30, 160, 169, 196
BspACI	CCGC	4 cut(s)	15, 117, 131, 147
BspANI	GGCC	2 cut(s)	5, 11
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	25, 38, 164
BsrBI	CCGCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	4 cut(s)	30, 160, 169, 196
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	212, 219
BstACI	GRCGYC	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	4 cut(s)	33, 163, 172, 199
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	30, 160, 169, 196
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 55, 58, 61, 64, 260
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	7 cut(s)	61, 64, 67, 70, 73, 76, 193
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	5, 11
BtgI	CCRYGG	1 cut(s)	6
CseI	GACGC	1 cut(s)	122
CviJI	RGCY	6 cut(s)	5, 11, 82, 247, 254, 263
CviKI_1	RGCY	6 cut(s)	5, 11, 82, 247, 254, 263
DpnI	GATC	4 cut(s)	32, 162, 171, 198
DpnII	GATC	4 cut(s)	30, 160, 169, 196
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	212, 219
EarI	CTCTTC	2 cut(s)	212, 219
EciI	GGCGGA	2 cut(s)	4, 136
Eco24I	GRGCYC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	142
FaiI	YATR	3 cut(s)	302, 325, 331
Fnu4HI	GCNGC	8 cut(s)	50, 53, 56, 59, 62, 65, 117, 207
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	8 cut(s)	50, 53, 56, 59, 62, 65, 117, 207
GluI	GCNGC	8 cut(s)	50, 53, 56, 59, 62, 65, 117, 207
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	5, 11
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	96, 107
HphI	GGTGA	2 cut(s)	120, 325
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	209, 287
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 55, 58, 61, 64, 260
Hsp92I	GRCGYC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	30, 160, 169, 196
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	7 cut(s)	61, 64, 67, 70, 73, 76, 193
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	32, 162, 171, 198
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	4 cut(s)	30, 160, 169, 196
MboII	GAAGA	4 cut(s)	229, 236, 269, 284
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	2 cut(s)	280, 316
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	22, 28, 94, 130, 136, 275
MseI	TTAA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	6 cut(s)	49, 55, 58, 61, 64, 260
NdeII	GATC	4 cut(s)	30, 160, 169, 196
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	96
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	8 cut(s)	51, 54, 57, 60, 63, 66, 118, 208
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	8 cut(s)	50, 53, 56, 59, 62, 65, 117, 207
Sau3AI	GATC	4 cut(s)	30, 160, 169, 196
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	3 cut(s)	160, 256, 315
SfcI	CTRYAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	280, 316
SsiI	CCGC	4 cut(s)	15, 117, 131, 147
StyD4I	CCNGG	1 cut(s)	291
TaqI	TCGA	2 cut(s)	78, 270
TasI	AATT	2 cut(s)	280, 316
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	7 cut(s)	49, 52, 55, 58, 61, 64, 206
Tsp45I	GTSAC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.