Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Forward (+)

64618898 .. 64623255

Gene Structure 4358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCAAGGTATTGGCCTCCTCCTCCCCGGACAGAATCGAAGTCACGCCGCAACAGCAGCAACACCCAGTCATCGAGCCCTCGCCGTCCAGATTCTCCACCGATTCTGACTCCGCCTTGTCCTCATCGCTCATCTCCTGCTCCGCCGACACACCTGATCGCACTAATCCTTCGTTTGCCTCTTACAATGCCAATCAAGTCCTCTCAATCTTCTTCTTCTTCTTAATTCACAGTGTTCTTATTTTGGAAACTTCGTGTTTAGAAATTTATGCTGTCCAATCCAATTGGATTTTTCACACTCTCGGGGCCGTCGACGAAGTGGTAGAGGCTAGGGCCGTCGAAGTGGCATCGCAGGCTTTGGACATAGTGAAGAGGAACCGGAGCCGGAGATGTCTGCAGCAGAGCACGCAGAACCCGACCACAGAGACGGCGATGGCGCGTGGTTTGGTGGGTTTGTCGAGGGAGTCGCCGAAGATCCCAGCAATGGAGTCGACGGAGCCGGACGTACTACTTCGCGGCGGTGTTCCGGGCCAAGTTTGGGTCGGTCTCGTCCTGCCTAGGGGAATGAAGGGGAGGAGAGAGGAGGCGGTGAGGATAGGATCGTGGACTCGGCGCACGATAGCGCTGAGGCGGCGGTGGGCGTGGCGGAGAAGCTGGGGGAGAGGAAGTGGAAGGGTGAGGTTCAGCAGTGGGGCTGGGATTGTTGTGTTGGGAAGAAGAAGAAGAGTGGTGGAGTCGGGTTTAGGTTTTGCGAGCTGGGATTGGTGCTCCGGCCACTGGATTCAGGGCTCCTCCGGCGTGGCGCCGATCTCCTCTACACCGCCTCCCACCAATGGACGAGTTCCGGCGATTGAGAGAGCTTTCTCTTTGATCTGGAGCTTTCTCTTTGAACTCTTCTTCCACAATTTTAGTTTCAAGATTTACATTGCTCGATTCAGTGGCTGGGTCCAAGAAGAGTTCTATCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

324

Amino Acids

36.05

Weight (kDa)

10.08

Isoelectric Point (pI)

65.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	802
AccI	GTMKAC	2 cut(s)	312, 491
AccII	CGCG	2 cut(s)	439, 516
AclWI	GGATC	2 cut(s)	469, 607
AcoI	YGGCCR	2 cut(s)	3, 772
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	803
AfaI	GTAC	1 cut(s)	507
AfeI	AGCGCT	1 cut(s)	624
AfiI	CCNNNNNNNGG	5 cut(s)	484, 538, 559, 777, 833
AgsI	TTSAA	2 cut(s)	890, 916
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
AluBI	AGCT	4 cut(s)	654, 756, 860, 879
AluI	AGCT	4 cut(s)	654, 756, 860, 879
Alw21I	GWGCWC	2 cut(s)	407, 770
Alw26I	GTCTC	2 cut(s)	419, 551
AlwI	GGATC	2 cut(s)	469, 607
AlwNI	CAGNNNCTG	1 cut(s)	942
Ama87I	CYCGRG	1 cut(s)	302
Aor51HI	AGCGCT	1 cut(s)	624
AoxI	GGCC	6 cut(s)	3, 15, 306, 333, 529, 772
ApeKI	GCWGC	2 cut(s)	58, 397
ApoI	RAATTY	1 cut(s)	264
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	4 cut(s)	439, 615, 625, 805
AspS9I	GGNCC	4 cut(s)	306, 333, 529, 946
AsuC2I	CCSGG	2 cut(s)	29, 528
AsuHPI	GGTGA	2 cut(s)	601, 688
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	946
AvrII	CCTAGG	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	2 cut(s)	81, 791
Bbv12I	GWGCWC	2 cut(s)	407, 770
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	70, 409
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	4 cut(s)	70, 293, 320, 444
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BcnI	CCSGG	2 cut(s)	29, 528
BcoDI	GTCTC	2 cut(s)	419, 551
BfaI	CTAG	2 cut(s)	330, 558
BfmI	CTRYAG	1 cut(s)	395
BfoI	RGCGCY	2 cut(s)	626, 806
BisI	GCNGC	5 cut(s)	50, 59, 398, 517, 632
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	5 cut(s)	51, 60, 399, 518, 633
Bme1390I	CCNGG	2 cut(s)	29, 528
Bme18I	GGWCC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	306, 333, 529, 946
BmiI	GGNNCC	7 cut(s)	307, 377, 383, 498, 790, 804, 947
BmrFI	CCNGG	2 cut(s)	29, 528
BmrI	ACTGGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	895
Bpu10I	CCTNAGC	1 cut(s)	626
BpuMI	CCSGG	2 cut(s)	29, 528
BsaHI	GRCGYC	1 cut(s)	803
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	6, 27, 557
BsaWI	WCCGGW	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	652, 682, 808, 838
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 538, 559, 777, 833
Bse1I	ACTGG	2 cut(s)	68, 782
Bse3DI	GCAATG	2 cut(s)	489, 924
BseDI	CCNNGG	3 cut(s)	6, 27, 557
BseLI	CCNNNNNNNGG	5 cut(s)	484, 538, 559, 777, 833
BseMI	GCAATG	2 cut(s)	489, 924
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	2 cut(s)	68, 782
BseRI	GAGGAG	6 cut(s)	10, 13, 589, 596, 781, 802
BseXI	GCAGC	2 cut(s)	70, 409
BseYI	CCCAGC	5 cut(s)	478, 654, 695, 756, 942
Bsh1236I	CGCG	2 cut(s)	439, 516
BshFI	GGCC	6 cut(s)	5, 17, 308, 335, 531, 774
BshNI	GGYRCC	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	407, 770
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	8 cut(s)	29, 379, 385, 500, 527, 771, 795, 845
BslI	CCNNNNNNNGG	5 cut(s)	484, 538, 559, 777, 833
BsmAI	GTCTC	2 cut(s)	419, 551
BsmBI	CGTCTC	1 cut(s)	419
BsnI	GGCC	6 cut(s)	5, 17, 308, 335, 531, 774
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	4 cut(s)	81, 407, 770, 791
Bsp143I	GATC	5 cut(s)	157, 474, 599, 807, 870
BspANI	GGCC	6 cut(s)	5, 17, 308, 335, 531, 774
BspCNI	CTCAG	1 cut(s)	618
BspFNI	CGCG	2 cut(s)	439, 516
BspLI	GGNNCC	7 cut(s)	307, 377, 383, 498, 790, 804, 947
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	2 cut(s)	469, 607
BspT107I	GGYRCC	1 cut(s)	802
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	489, 924
BsrI	ACTGG	2 cut(s)	68, 782
BssECI	CCNNGG	3 cut(s)	6, 27, 557
BssMI	GATC	5 cut(s)	157, 474, 599, 807, 870
BssNI	GRCGYC	1 cut(s)	803
BssT1I	CCWWGG	2 cut(s)	6, 557
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	4 cut(s)	365, 718, 899, 948
BstACI	GRCGYC	1 cut(s)	803
BstC8I	GCNNGC	3 cut(s)	354, 407, 754
BstDEI	CTNAG	1 cut(s)	626
BstFNI	CGCG	2 cut(s)	439, 516
BstH2I	RGCGCY	2 cut(s)	626, 806
BstHHI	GCGC	4 cut(s)	439, 615, 625, 805
BstKTI	GATC	5 cut(s)	160, 477, 602, 810, 873
BstMAI	GTCTC	2 cut(s)	419, 551
BstMBI	GATC	5 cut(s)	157, 474, 599, 807, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 58, 353, 406, 631, 795
BstSCI	CCNGG	2 cut(s)	27, 526
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	2 cut(s)	439, 516
BstV1I	GCAGC	2 cut(s)	70, 409
BstX2I	RGATCY	1 cut(s)	474
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	6 cut(s)	5, 17, 308, 335, 531, 774
BtgZI	GCGATG	3 cut(s)	111, 333, 446
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	4 cut(s)	238, 694, 775, 943
Cac8I	GCNNGC	3 cut(s)	354, 407, 754
CaiI	CAGNNNCTG	1 cut(s)	942
CfoI	GCGC	4 cut(s)	439, 615, 625, 805
Cfr13I	GGNCC	4 cut(s)	306, 333, 529, 946
Csp6I	GTAC	1 cut(s)	506
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	1 cut(s)	626
DinI	GGCGCC	1 cut(s)	804
DpnI	GATC	5 cut(s)	159, 476, 601, 809, 872
DpnII	GATC	5 cut(s)	157, 474, 599, 807, 870
EaeI	YGGCCR	2 cut(s)	3, 772
Eam1104I	CTCTTC	4 cut(s)	365, 718, 899, 948
EarI	CTCTTC	4 cut(s)	365, 718, 899, 948
EciI	GGCGGA	3 cut(s)	103, 133, 661
Eco130I	CCWWGG	2 cut(s)	6, 557
Eco24I	GRGCYC	2 cut(s)	81, 791
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	946
Eco47III	AGCGCT	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	6, 557
EcoT38I	GRGCYC	2 cut(s)	81, 791
EgeI	GGCGCC	1 cut(s)	804
EheI	GGCGCC	1 cut(s)	804
ErhI	CCWWGG	2 cut(s)	6, 557
Esp3I	CGTCTC	1 cut(s)	419
FaiI	YATR	2 cut(s)	270, 365
FblI	GTMKAC	2 cut(s)	312, 491
Fnu4HI	GCNGC	5 cut(s)	50, 59, 398, 517, 632
FriOI	GRGCYC	2 cut(s)	81, 791
Fsp4HI	GCNGC	5 cut(s)	50, 59, 398, 517, 632
FspBI	CTAG	2 cut(s)	330, 558
GlaI	GCGC	4 cut(s)	438, 614, 624, 804
GluI	GCNGC	5 cut(s)	50, 59, 398, 517, 632
GsaI	CCCAGC	5 cut(s)	482, 658, 699, 760, 946
GsuI	CTGGAG	1 cut(s)	895
HaeII	RGCGCY	2 cut(s)	626, 806
HaeIII	GGCC	6 cut(s)	5, 17, 308, 335, 531, 774
HapII	CCGG	8 cut(s)	29, 379, 385, 500, 527, 771, 795, 845
HhaI	GCGC	4 cut(s)	439, 615, 625, 805
Hin1I	GRCGYC	1 cut(s)	803
Hin6I	GCGC	4 cut(s)	437, 613, 623, 803
HinP1I	GCGC	4 cut(s)	437, 613, 623, 803
HincII	GTYRAC	2 cut(s)	313, 492
HindII	GTYRAC	2 cut(s)	313, 492
HpaII	CCGG	8 cut(s)	29, 379, 385, 500, 527, 771, 795, 845
HphI	GGTGA	2 cut(s)	601, 688
Hpy166II	GTNNAC	3 cut(s)	313, 492, 606
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	90, 874, 916
Hpy8I	GTNNAC	3 cut(s)	313, 492, 606
Hpy99I	CGWCG	4 cut(s)	314, 317, 341, 496
HpyAV	CCTTC	3 cut(s)	180, 562, 666
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 58, 353, 406, 631, 795
HpyF3I	CTNAG	1 cut(s)	626
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	803
HspAI	GCGC	4 cut(s)	437, 613, 623, 803
KasI	GGCGCC	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	157, 474, 599, 807, 870
LmnI	GCTCC	6 cut(s)	146, 381, 496, 773, 794, 876
Lsp1109I	GCAGC	2 cut(s)	70, 409
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	330, 558
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	5 cut(s)	159, 476, 601, 809, 872
MboI	GATC	5 cut(s)	157, 474, 599, 807, 870
MfeI	CAATTG	1 cut(s)	283
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	4 cut(s)	81, 407, 770, 791
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	225, 264, 283, 904
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	803
MlyI	GAGTC	5 cut(s)	104, 473, 497, 601, 743
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	8 cut(s)	29, 379, 385, 500, 527, 771, 795, 845
MspR9I	CCNGG	2 cut(s)	29, 528
MunI	CAATTG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	439, 516
MwoI	GCNNNNNNNGC	6 cut(s)	55, 58, 353, 406, 631, 795
NarI	GGCGCC	1 cut(s)	803
NciI	CCSGG	2 cut(s)	29, 528
NdeII	GATC	5 cut(s)	157, 474, 599, 807, 870
NlaIV	GGNNCC	7 cut(s)	307, 377, 383, 498, 790, 804, 947
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 413
PfeI	GAWTC	5 cut(s)	36, 93, 104, 781, 933
PkrI	GCNGC	5 cut(s)	51, 60, 399, 518, 633
PleI	GAGTC	5 cut(s)	104, 472, 496, 601, 742
PluTI	GGCGCC	1 cut(s)	806
PpsI	GAGTC	5 cut(s)	104, 472, 496, 601, 742
PspFI	CCCAGC	5 cut(s)	478, 654, 695, 756, 942
PspN4I	GGNNCC	7 cut(s)	307, 377, 383, 498, 790, 804, 947
PspPI	GGNCC	4 cut(s)	306, 333, 529, 946
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SalI	GTCGAC	2 cut(s)	311, 490
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	5 cut(s)	50, 59, 398, 517, 632
Sau3AI	GATC	5 cut(s)	157, 474, 599, 807, 870
Sau96I	GGNCC	4 cut(s)	306, 333, 529, 946
SchI	GAGTC	5 cut(s)	104, 473, 497, 601, 743
ScrFI	CCNGG	2 cut(s)	29, 528
SduI	GDGCHC	4 cut(s)	81, 407, 770, 791
SetI	ASST	9 cut(s)	12, 157, 507, 656, 683, 748, 758, 862, 881
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	395
SfoI	GGCGCC	1 cut(s)	804
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	946
Sse9I	AATT	4 cut(s)	225, 264, 283, 904
SspDI	GGCGCC	1 cut(s)	802
SspMI	CTAG	2 cut(s)	330, 558
StyD4I	CCNGG	2 cut(s)	27, 526
StyI	CCWWGG	2 cut(s)	6, 557
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	7 cut(s)	39, 75, 312, 339, 458, 491, 931
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	4 cut(s)	225, 264, 283, 904
TauI	GCSGC	3 cut(s)	52, 519, 634
TfiI	GAWTC	5 cut(s)	36, 93, 104, 781, 933
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	4 cut(s)	238, 694, 782, 943
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	58, 397
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	4 cut(s)	238, 694, 782, 943
VpaK11BI	GGWCC	1 cut(s)	946
XapI	RAATTY	1 cut(s)	264
XmaJI	CCTAGG	1 cut(s)	557
XmiI	GTMKAC	2 cut(s)	312, 491
XspI	CTAG	2 cut(s)	330, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.