Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Reverse (-)

70650933 .. 70651148

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG404300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCCATGGCCGTGGCTTTCGCCTCCCCGGACAGGATCGAAGTCACGCCGCAACACCTCGTCATCGAGCCCTCGCCGTCCAGATCCTCCACCGACTCCGAAGCCGCCTCGTCCTCACTGCTTGTCTCCTGCTCCGCCGACACACCTGATCGCACTGATCCTTCGTTTGCTTCTCCAACGCCGATCAGGTCCTCCCAGTCTTCTTCTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

71

Amino Acids

7.33

Weight (kDa)

4.45

Isoelectric Point (pI)

104.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 105, 135
AclWI	GGATC	3 cut(s)	44, 78, 152
AcoI	YGGCCR	2 cut(s)	3, 9
AfiI	CCNNNNNNNGG	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	44, 78, 152
AoxI	GGCC	2 cut(s)	3, 9
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	50, 105
BlsI	GCNGC	2 cut(s)	51, 106
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	6, 12, 27
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	6, 12, 27
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	5, 11
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	5, 11
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	36, 83, 148, 157, 183
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	50, 105, 135
BspANI	GGCC	2 cut(s)	5, 11
BspPI	GGATC	3 cut(s)	44, 78, 152
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	6, 12, 27
BssMI	GATC	5 cut(s)	36, 83, 148, 157, 183
BssT1I	CCWWGG	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	6, 12
BstKTI	GATC	5 cut(s)	39, 86, 151, 160, 186
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	36, 83, 148, 157, 183
BstSCI	CCNGG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	83
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	5, 11
BtgI	CCRYGG	2 cut(s)	6, 12
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	116, 153
Cfr13I	GGNCC	1 cut(s)	189
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	5 cut(s)	5, 11, 17, 70, 104
CviKI_1	RGCY	5 cut(s)	5, 11, 17, 70, 104
DpnI	GATC	5 cut(s)	38, 85, 150, 159, 185
DpnII	GATC	5 cut(s)	36, 83, 148, 157, 183
EaeI	YGGCCR	2 cut(s)	3, 9
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	10
FaiI	YATR	1 cut(s)	8
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	50, 105
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	50, 105
GluI	GCNGC	2 cut(s)	50, 105
HaeIII	GGCC	2 cut(s)	5, 11
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	36, 83, 148, 157, 183
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	7 cut(s)	19, 42, 94, 142, 159, 172, 209
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	5 cut(s)	38, 85, 150, 159, 185
MboI	GATC	5 cut(s)	36, 83, 148, 157, 183
MboII	GAAGA	4 cut(s)	192, 195, 198, 201
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	34, 68, 82, 97, 118, 124, 202
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	214
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	29
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	5 cut(s)	36, 83, 148, 157, 183
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	51, 106
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	189
PspPPI	RGGWCCY	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	214
SatI	GCNGC	2 cut(s)	50, 105
Sau3AI	GATC	5 cut(s)	36, 83, 148, 157, 183
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	3 cut(s)	60, 148, 191
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	11
SsiI	CCGC	3 cut(s)	50, 105, 135
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	2 cut(s)	39, 66
TauI	GCSGC	2 cut(s)	52, 107
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TscAI	CASTG	2 cut(s)	123, 160
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	2 cut(s)	123, 160
VpaK11BI	GGWCC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.