Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Reverse (-)

43882553 .. 43883987

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTCGTGGCCTCCTCCTCCCCAAATAGAATCGAAGTCACGCTGCAGCAGCAGCAGCACCTCATCATCAAGCCCTTGCCGTCCAGATTCTCCACCGACTCCGACGCCGCCTCGTCCTCACCGCTCATCTCCTGTTCTGCCGACACACCTAATCACACTAATCCTTCGTTTGCTTCTCCCAACGCCGATCAGGTTCTCCCAGTCTTCTTCTTCTTCTTAATTCATATTGTTCTTGTTTTGGAAACTTCGTGCTGGTGGATTGAAGATGTGGAGGAAGGGCCCAATGCAGGAAATAAGGAGGAGGATGAAGGGTCTTTGGGGACTGAGGACATGAGTGATGGTCAAGGGCATGTTTTTGTGGATTTAGATGACTCTGATGATAGACATATGGCTCAGGAAGAGGAGGTTGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

139

Amino Acids

15.13

Weight (kDa)

4.07

Isoelectric Point (pI)

72.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	2 cut(s)	108, 122
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	9, 278
ApaI	GGGCCC	1 cut(s)	282
ApeKI	GCWGC	5 cut(s)	43, 46, 49, 52, 55
AspS9I	GGNCC	2 cut(s)	278, 279
AsuHPI	GGTGA	1 cut(s)	111
BaeGI	GKGCMC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	30, 58, 61, 64, 67
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	44
BisI	GCNGC	6 cut(s)	44, 47, 50, 53, 56, 108
BlsI	GCNGC	6 cut(s)	45, 48, 51, 54, 57, 109
BmgT120I	GGNCC	2 cut(s)	278, 279
BmiI	GGNNCC	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	315, 407
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	4 cut(s)	4, 7, 314, 416
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	5 cut(s)	30, 58, 61, 64, 67
BshFI	GGCC	2 cut(s)	11, 280
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	11, 280
Bsp120I	GGGCCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	2 cut(s)	108, 122
BspANI	GGCC	2 cut(s)	11, 280
BspCNI	CTCAG	2 cut(s)	316, 406
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	324, 393
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 52, 55
BstNSI	RCATGY	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	282
BstV1I	GCAGC	5 cut(s)	30, 58, 61, 64, 67
BstV2I	GAAGAC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	11, 280
BtsCI	GGATG	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	278, 279
CseI	GACGC	1 cut(s)	113
CviAII	CATG	2 cut(s)	331, 350
CviJI	RGCY	4 cut(s)	11, 73, 280, 392
CviKI_1	RGCY	4 cut(s)	11, 73, 280, 392
DdeI	CTNAG	2 cut(s)	324, 393
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	2 cut(s)	334, 353
FaiI	YATR	5 cut(s)	225, 332, 351, 387, 389
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	330, 349
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	44, 47, 50, 53, 56, 108
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	44, 47, 50, 53, 56, 108
GluI	GCNGC	6 cut(s)	44, 47, 50, 53, 56, 108
HaeIII	GGCC	2 cut(s)	11, 280
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	334, 353
HinfI	GANTC	4 cut(s)	30, 87, 98, 371
HphI	GGTGA	1 cut(s)	111
Hpy188I	TCNGA	2 cut(s)	103, 376
Hpy188III	TCNNGA	2 cut(s)	84, 395
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	174, 269, 302
HpyCH4V	TGCA	2 cut(s)	46, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 52, 55
HpyF3I	CTNAG	2 cut(s)	324, 393
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	334, 353
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	7 cut(s)	97, 145, 176, 213, 238, 273, 380
Lsp1109I	GCAGC	5 cut(s)	30, 58, 61, 64, 67
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	1 cut(s)	187
MboII	GAAGA	6 cut(s)	196, 199, 202, 205, 275, 410
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	92, 365
MmeI	TCCRAC	2 cut(s)	126, 388
MseI	TTAA	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	49, 52, 55
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	334, 353
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	30, 87
PkrI	GCNGC	6 cut(s)	45, 48, 51, 54, 57, 109
PleI	GAGTC	2 cut(s)	92, 365
PpsI	GAGTC	2 cut(s)	92, 365
PspN4I	GGNNCC	1 cut(s)	280
PspOMI	GGGCCC	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	278, 279
PstI	CTGCAG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	6 cut(s)	44, 47, 50, 53, 56, 108
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	278, 279
SchI	GAGTC	2 cut(s)	92, 365
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	63, 151, 195, 408
SfcI	CTRYAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	2 cut(s)	108, 122
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	219
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	30, 87
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	5 cut(s)	43, 46, 49, 52, 55
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	212, 321
XceI	RCATGY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.