Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Reverse (-)

46916633 .. 46929084

Gene Structure 12452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCGTGGCCTCCGCCTCCCCGGACAGGATCCAAGTCAAGCCGCAACAACAGCAGCACCACGTCATCGAGCCCTCGCCGTTCAGATTCTCCACCGACTCGGATGCTACCTCGTCCTCGCCGCTCGTCTCCTGCTCTGCCGACACACCTGATCGCATTGATCTTTCGTTTGCTTCTCCCAACACCGATCAGACCAAGTTTGGCAACTATTGTCTTGCCAAGACAATAGCAGAAACTGAAGCTTTGGAGTATGCAAAGAAAATTACAAGCATAATTGGATGGCAGAACATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

98

Amino Acids

10.73

Weight (kDa)

5.52

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	3 cut(s)	15, 44, 122
AclWI	GGATC	2 cut(s)	25, 38
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	27
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	25, 38
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	3, 9
ApeKI	GCWGC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	44, 56, 122
BlsI	GCNGC	3 cut(s)	45, 57, 123
Bme1390I	CCNGG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	6, 21
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	6, 21
BseGI	GGATG	2 cut(s)	109, 284
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	5, 11
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	5, 11
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	30, 151, 160, 187
BspACI	CCGC	3 cut(s)	15, 44, 122
BspANI	GGCC	2 cut(s)	5, 11
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	25, 38
BsrBI	CCGCTC	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	6, 21
BssMI	GATC	4 cut(s)	30, 151, 160, 187
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	109, 284
BstKTI	GATC	4 cut(s)	33, 154, 163, 190
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	4 cut(s)	30, 151, 160, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	5, 11
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	109, 284
CaiI	CAGNNNCTG	1 cut(s)	236
CviJI	RGCY	5 cut(s)	5, 11, 43, 73, 242
CviKI_1	RGCY	5 cut(s)	5, 11, 43, 73, 242
DpnI	GATC	4 cut(s)	32, 153, 162, 189
DpnII	GATC	4 cut(s)	30, 151, 160, 187
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	4
Eco24I	GRGCYC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	133
FaiI	YATR	2 cut(s)	252, 272
Fnu4HI	GCNGC	3 cut(s)	44, 56, 122
FokI	GGATG	2 cut(s)	116, 291
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	44, 56, 122
GluI	GCNGC	3 cut(s)	44, 56, 122
HaeIII	GGCC	2 cut(s)	5, 11
HapII	CCGG	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	2 cut(s)	87, 98
HpaII	CCGG	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	86, 103, 192
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	30, 151, 160, 187
LpnPI	CCDG	4 cut(s)	13, 36, 145, 162
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	63
MalI	GATC	4 cut(s)	32, 153, 162, 189
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	4 cut(s)	30, 151, 160, 187
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	261, 273
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	22, 28, 85, 121, 127
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	30, 151, 160, 187
NlaIV	GGNNCC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	45, 57, 123
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	44, 56, 122
Sau3AI	GATC	4 cut(s)	30, 151, 160, 187
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	4 cut(s)	66, 113, 151, 244
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	261, 273
SsiI	CCGC	3 cut(s)	15, 44, 122
StyD4I	CCNGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	261, 273
TauI	GCSGC	2 cut(s)	46, 124
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.