Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007126

Physical Location & Seq

Genomic Coordinates Forward (+)

42018920 .. 42024316

Gene Structure 5397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG192800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGGCTGCACGGCGTCCAAATTGGACAACGAGGACACTGTGCGGCGGTGCAAGGACCGGCGCCGTTTAATGAAAGACGCCGTCTTCGCCCGCCACCACCTCGCCGCCGCCCACGCCGACTACTGCCGCTCCCTCCGCCTCACCGGCTCCGCCCTCGTCTCCTTCGCCAACTTCGAACCCCTCTCCATCTCCGACCAAACCCCCGCCGTCTTCCTCCACCCTACTACTACCACTTCCAACACCTCTCCTCCTCCTCCTCCTCCTCCCTCCTCCAATCCCCTCCACCCACGTGCCCCTCCCTCCCCAGCTCCCTCCTCCCTCCACCCCCCGCCGCCGCCTCCGCCGCTCTCCCCCACCATCGCCAGCTCCAAGCTCCCCCACATCCTCTCCGACTCCTCCCTCTCCTCCTCCCGCCGCCACCGCCGCCGGAGACAGCCTCCGCCGGGGCCGAAGCTCCCGCACATACTCTCCGACACCAGCCCCTCCTCCACTCCCCGGAGCCAGAACTCGAACTTCACCGGCGGCGGGTTTCCGACGGCCTTTCAGGCGAACTCGACGTACTCCAGCACGCCGTCGCAGGCCTCCTCCGTGTGGAATTGGGAGAATTTCTATCCTCCGTCGCCGCCGGGCTCCGATTTCTTCAACCAGAGAGAGCAGGAGTCCAAGCAATCCCACCACCTCGACGATTCCGACGACGACGACAACACCGAGCCGGAAACCGAAACCGAGGAGGCATCGGAGTACAATTACTTCCACAACATGCCCAAATCCCAACCCACCGCCCGCCAAAACCACTCGTATTCTCAGTCGGAGAAGTACGCCCAGTCCGAAACCGAGAGATCAGAGTACGATTTCTTCGTCCCCAGCCGTAACCCTAAAGCTCCGGCCAAGACTCAGTCGGAGAAGTACGCTCAGTCGGAGAGAGAAGAGGTCCACTGCAGCGAGTGGGGCGATCACGATCGCTACAGCACCACGAGCTCGTCTGAAAACGAAGACGACGACGACAGGGATTCGAGATCCGAGATGGGGACCCGGTCCAATTTCGACCCGTCGGTTCGGGCCGAGTCGGTCGCGGGGTCGGTGCCGCCGGCCCAGACGATGCCGAAGTACGCGCCGAGCATGAGGTCGGAGGGGTCGGAAGGGAGTACTTACCGGAGCAGTGAAATCTCGAACATGAAAATGGTGGTGAGGCATAAAGACTTGAAGGAGATTGTGCAGGCGATCAAGGAGAATTTCGATAACGCGGCGGCGGCCGGAGACCAGGTTTCCGAGATGCTCGAGTCCAACCGGGCCCAGCTTGATCGGAGCTTCAAGCAGCTCAAGAAGAAAGTGTATCACTCAAGTAGTGTGCTTAGCACATTGAGCTCGACTTGGTCGTCGAAGCCGCCGCTAGCGGTGAAGTACCAGCTGGACGCGGAAGTGCTCAATGCACAGGGCGGTCCGAAGAGTCTATGTTCCACCTTCGAGCGGCTTTTGGCTTGGGAGAAGAAGCTCTATCAGGAAGTCAAGGCTAGAGAAAGTGTCAAGATTGAACATGAGAAGAAGTTATCTTCACTACAAAATCAGGAGTACAAGGGAGAGGACGAAATCAAGCTAGACAAGACCAAGGCTTCAATAAAGAAGCTGCAATCACTAATTATTGTCACATCTCAGGCCGTCTCAACCACCTCAACTGCCATCATTGATCTTAGAGACTCTGATCTTGTTCCTCAGCTTGTTGAGCTGTGCCATGGGTTTATGTACATGTGGAAATCAATGCACCAGTACCATGAAGTCCAGAACAACATTGTACAGCAAGTTAGGGGACTTGTGAACCGGTCATCCAAGGGTGACGCAACCTCCGAACTGCACCGCCAGGCGACTCGTGACTTGGAATCAGCTGTTTCTGCCTGGCACTCCAGCTTTTGCCGCTTAATAAAGTTCAAGCGGGACTTTATCCAGTCTGTTCATGGTTGGTTCAAGCTCAGCCTTCTTCCTGTTAACAATGACACCTTCACCGGCAACAATGAGCCTTCTGATGTATATTTCTTCTGTGACGAGTGGAAGCATGCACTTGACCGTGTCCCTGACACAGTGGCTTCAGAGGCTATCAAGAGCTTCATCAATGTTGTCCACGTAATCTCCATAAAACAAAGTGAAGAGCTGAAGATCAAAAAAAGAACTGAAGCTGCATCCAAGGAGCTTGAAAAGAAGGCTTCTTCTGTCCGGAACATTGAAAAGAAGTTCTATAATTCCTACTCCATGGTTGGTATTGGACTTCCCGATTCAGGGCCTGATGGGCAAGGTTTGGATGCTCGCGACCCGCTTGCTGAAAAGAAATCTGAACTTGCAACCTCCCAGAGGCGGGTTGAAGAAGAAATGAGTAGGCATTCAAAGGCAGTGGAGGTGACTAGAGCAATGACTCTAAACAACCTTCAAACAGGGTTGCCAGGGGTTTTTCAAGCACTGACCAGTTTTTCTGGGTTATTTACAGAGGCACTCAATTCAGTTTGTACTAGTTCCTACTCCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009987 GO:0010035 GO:0010167 GO:0015698 GO:0015706 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

838

Amino Acids

93.69

Weight (kDa)

6.74

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 57	9.5e-24	Protein of unknown function (DUF630)
DUF632	PF04782	401 - 705	1.8e-105	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02110 AT3G60320
fragaria_vesca	FvH4_7g10170
malus_domestica	MD02G1212400.v1.1 MD07G1108500.v1.1 MD07G1108600.v1.1
prunus_persica	Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1 Prupe.2G131300_v2.0.a1
pyrus_communis	pycom02g17630 pycom07g09310
rosa_chinensis	RchiOBHm_Chr1g0347891
rosa_laevigata	RLG00000028706
rosa_multiflora	Rmu_co8367439.1_g000001 Rmu_ssc0000342.1_g000007
rosa_roxburghii	Rroxscaffold_4G00307400
rosa_rugosa	Rorug01G0190300 Rorug01G0190400
rosa_samantha	Rh1AG208500 Rh1BG173100 Rh1CG192800 Rh1DG203000
rosa_wichuraiana	Rw1G017330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1375
AccB1I	GGYRCC	2 cut(s)	60, 1081
AccBSI	CCGCTC	3 cut(s)	129, 346, 1468
AccII	CGCG	5 cut(s)	1073, 1112, 1244, 1415, 2298
AccIII	TCCGGA	1 cut(s)	2205
AclWI	GGATC	1 cut(s)	1011
AcoI	YGGCCR	2 cut(s)	885, 1251
AcsI	RAATTY	2 cut(s)	604, 1231
AcuI	CTGAAG	3 cut(s)	2064, 2165, 2184
AcvI	CACGTG	1 cut(s)	290
AcyI	GRCGYC	3 cut(s)	14, 61, 78
AflIII	ACRYGT	1 cut(s)	1743
AgeI	ACCGGT	1 cut(s)	1815
AhlI	ACTAGT	1 cut(s)	2495
AjnI	CCWGG	4 cut(s)	1260, 1854, 1889, 2428
AleI	CACNNNNGTG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	1805, 1837
Alw21I	GWGCWC	3 cut(s)	980, 1367, 1425
Alw26I	GTCTC	5 cut(s)	163, 424, 1251, 1663, 1686
AlwI	GGATC	1 cut(s)	1011
AlwNI	CAGNNNCTG	1 cut(s)	2273
Ama87I	CYCGRG	1 cut(s)	1277
Aor13HI	TCCGGA	1 cut(s)	2205
ApaI	GGGCCC	1 cut(s)	1294
ApeKI	GCWGC	5 cut(s)	6, 939, 1315, 1624, 2168
ApoI	RAATTY	2 cut(s)	604, 1231
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AsiGI	ACCGGT	1 cut(s)	1815
AspLEI	GCGC	2 cut(s)	63, 1114
AsuC2I	CCSGG	5 cut(s)	444, 496, 627, 1033, 1289
AsuHPI	GGTGA	7 cut(s)	133, 508, 1198, 1408, 1841, 1987, 2398
AsuII	TTCGAA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	1390
AvaI	CYCGRG	1 cut(s)	1277
AvaII	GGWCC	5 cut(s)	55, 931, 1029, 1035, 1439
BaeGI	GKGCMC	2 cut(s)	295, 1294
BanI	GGYRCC	2 cut(s)	60, 1081
BanII	GRGCYC	4 cut(s)	632, 980, 1294, 1367
BarI	GAAGNNNNNNTAC	4 cut(s)	734, 766, 839, 871
BauI	CACGAG	2 cut(s)	973, 1863
BbrPI	CACGTG	1 cut(s)	290
BbsI	GAAGAC	3 cut(s)	76, 202, 999
Bbv12I	GWGCWC	3 cut(s)	980, 1367, 1425
BbvCI	CCTCAGC	1 cut(s)	1710
BbvI	GCAGC	4 cut(s)	951, 1327, 1611, 2155
BccI	CCATC	6 cut(s)	194, 365, 1018, 1685, 2270, 2516
BceAI	ACGGC	8 cut(s)	27, 48, 65, 191, 552, 556, 852, 1640
BcgI	CGANNNNNNTGC	2 cut(s)	2288, 2322
BciT130I	CCWGG	4 cut(s)	1262, 1856, 1891, 2430
BcnI	CCSGG	5 cut(s)	444, 496, 627, 1033, 1289
BcoDI	GTCTC	5 cut(s)	163, 424, 1251, 1663, 1686
BcuI	ACTAGT	1 cut(s)	2495
BfaI	CTAG	5 cut(s)	1391, 1512, 1595, 2391, 2496
BfmI	CTRYAG	2 cut(s)	937, 964
BfoI	RGCGCY	1 cut(s)	64
BglI	GCCNNNNNGGC	3 cut(s)	144, 545, 2278
BlpI	GCTNAGC	2 cut(s)	1352, 1964
BmcAI	AGTACT	1 cut(s)	1147
Bme1390I	CCNGG	9 cut(s)	444, 496, 627, 1033, 1262, 1289, 1856, 1891, 2430
Bme18I	GGWCC	5 cut(s)	55, 931, 1029, 1035, 1439
BmeT110I	CYCGRG	1 cut(s)	1277
BmiI	GGNNCC	9 cut(s)	62, 148, 447, 500, 631, 1030, 1031, 1083, 1292
BmrFI	CCNGG	9 cut(s)	444, 496, 627, 1033, 1262, 1289, 1856, 1891, 2430
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	5 cut(s)	743, 1089, 1263, 2180, 2281
BmtI	GCTAGC	1 cut(s)	1394
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	3 cut(s)	76, 202, 999
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	2 cut(s)	547, 1882
Bpu10I	CCTNAGC	1 cut(s)	1710
Bpu1102I	GCTNAGC	2 cut(s)	1352, 1964
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	1304, 1324
BpuMI	CCSGG	5 cut(s)	444, 496, 627, 1033, 1289
BsaAI	YACGTR	2 cut(s)	290, 2116
BsaBI	GATNNNNATC	1 cut(s)	957
BsaHI	GRCGYC	3 cut(s)	14, 61, 78
BsaI	GGTCTC	1 cut(s)	1251
BsaJI	CCNNGG	9 cut(s)	443, 494, 726, 1605, 1729, 1824, 2175, 2241, 2429
BsaWI	WCCGGW	3 cut(s)	1152, 1815, 2205
Bse118I	RCCGGY	6 cut(s)	57, 143, 518, 1087, 1815, 1997
Bse1I	ACTGG	4 cut(s)	823, 1762, 1939, 2451
Bse3DI	GCAATG	1 cut(s)	2403
Bse8I	GATNNNNATC	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	2205
BseBI	CCWGG	4 cut(s)	1262, 1856, 1891, 2430
BseDI	CCNNGG	9 cut(s)	443, 494, 726, 1605, 1729, 1824, 2175, 2241, 2429
BseGI	GGATG	4 cut(s)	381, 1820, 2171, 2296
BseJI	GATNNNNATC	1 cut(s)	957
BseMI	GCAATG	1 cut(s)	2403
BseMII	CTCAG	6 cut(s)	818, 908, 926, 1664, 1724, 1978
BseNI	ACTGG	4 cut(s)	823, 1762, 1939, 2451
BseSI	GKGCMC	2 cut(s)	295, 1294
BseX3I	CGGCCG	1 cut(s)	1251
BseXI	GCAGC	4 cut(s)	951, 1327, 1611, 2155
BseYI	CCCAGC	3 cut(s)	304, 863, 1293
BsgI	GTGCAG	2 cut(s)	1235, 1832
Bsh1236I	CGCG	5 cut(s)	1073, 1112, 1244, 1415, 2298
Bsh1285I	CGRYCG	3 cut(s)	961, 1071, 1254
BshNI	GGYRCC	2 cut(s)	60, 1081
BshTI	ACCGGT	1 cut(s)	1815
BsiEI	CGRYCG	3 cut(s)	961, 1071, 1254
BsiHKAI	GWGCWC	3 cut(s)	980, 1367, 1425
BsiHKCI	CYCGRG	1 cut(s)	1277
BslFI	GGGAC	5 cut(s)	845, 1042, 1818, 1943, 2048
BsmAI	GTCTC	5 cut(s)	163, 424, 1251, 1663, 1686
BsmBI	CGTCTC	2 cut(s)	163, 1663
BsmFI	GGGAC	5 cut(s)	845, 1042, 1818, 1943, 2048
BsmI	GAATGC	1 cut(s)	2368
Bso31I	GGTCTC	1 cut(s)	1251
BsoBI	CYCGRG	1 cut(s)	1277
Bsp119I	TTCGAA	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	1290
Bsp1286I	GDGCHC	6 cut(s)	295, 632, 980, 1294, 1367, 1425
Bsp13I	TCCGGA	1 cut(s)	2205
Bsp1407I	TGTACA	2 cut(s)	1740, 1789
Bsp143I	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
Bsp1720I	GCTNAGC	2 cut(s)	1352, 1964
Bsp19I	CCATGG	2 cut(s)	1729, 2241
Bsp68I	TCGCGA	1 cut(s)	2298
BspCNI	CTCAG	6 cut(s)	817, 907, 925, 1663, 1723, 1977
BspEI	TCCGGA	1 cut(s)	2205
BspFNI	CGCG	5 cut(s)	1073, 1112, 1244, 1415, 2298
BspLI	GGNNCC	9 cut(s)	62, 148, 447, 500, 631, 1030, 1031, 1083, 1292
BspMAI	CTGCAG	1 cut(s)	941
BspOI	GCTAGC	1 cut(s)	1394
BspPI	GGATC	1 cut(s)	1011
BspQI	GCTCTTC	1 cut(s)	2133
BspT104I	TTCGAA	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	60, 1081
BspTNI	GGTCTC	1 cut(s)	1251
BsrBI	CCGCTC	3 cut(s)	129, 346, 1468
BsrDI	GCAATG	1 cut(s)	2403
BsrFI	RCCGGY	6 cut(s)	57, 143, 518, 1087, 1815, 1997
BsrGI	TGTACA	2 cut(s)	1740, 1789
BsrI	ACTGG	4 cut(s)	823, 1762, 1939, 2451
BssAI	RCCGGY	6 cut(s)	57, 143, 518, 1087, 1815, 1997
BssECI	CCNNGG	9 cut(s)	443, 494, 726, 1605, 1729, 1824, 2175, 2241, 2429
BssMI	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
BssNI	GRCGYC	3 cut(s)	14, 61, 78
BssSI	CACGAG	2 cut(s)	973, 1863
BssT1I	CCWWGG	5 cut(s)	1605, 1729, 1824, 2175, 2241
Bst2BI	CACGAG	2 cut(s)	973, 1863
Bst2UI	CCWGG	4 cut(s)	1262, 1856, 1891, 2430
Bst4CI	ACNGT	3 cut(s)	40, 2060, 2074
Bst6I	CTCTTC	3 cut(s)	921, 1439, 2133
BstACI	GRCGYC	3 cut(s)	14, 61, 78
BstAUI	TGTACA	2 cut(s)	1740, 1789
BstBAI	YACGTR	2 cut(s)	290, 2116
BstBI	TTCGAA	1 cut(s)	174
BstDEI	CTNAG	8 cut(s)	804, 894, 912, 1352, 1650, 1688, 1710, 1964
BstDSI	CCRYGG	2 cut(s)	1729, 2241
BstENI	CCTNNNNNAGG	1 cut(s)	2338
BstF5I	GGATG	4 cut(s)	381, 1820, 2171, 2296
BstFNI	CGCG	5 cut(s)	1073, 1112, 1244, 1415, 2298
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	63, 1114
BstKTI	GATC	9 cut(s)	842, 955, 961, 1019, 1224, 1303, 1687, 1702, 2151
BstMAI	GTCTC	5 cut(s)	163, 424, 1251, 1663, 1686
BstMBI	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
BstMCI	CGRYCG	3 cut(s)	961, 1071, 1254
BstNI	CCWGG	4 cut(s)	1262, 1856, 1891, 2430
BstNSI	RCATGY	3 cut(s)	763, 1747, 2051
BstSCI	CCNGG	9 cut(s)	442, 494, 625, 1031, 1260, 1287, 1854, 1889, 2428
BstSFI	CTRYAG	2 cut(s)	937, 964
BstSLI	GKGCMC	2 cut(s)	295, 1294
BstUI	CGCG	5 cut(s)	1073, 1112, 1244, 1415, 2298
BstV1I	GCAGC	4 cut(s)	951, 1327, 1611, 2155
BstV2I	GAAGAC	3 cut(s)	76, 202, 999
BstX2I	RGATCY	1 cut(s)	1016
BstYI	RGATCY	1 cut(s)	1016
BstZI	CGGCCG	1 cut(s)	1251
BtgI	CCRYGG	2 cut(s)	1729, 2241
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	381, 1820, 2171, 2296
BtsI	GCAGTG	3 cut(s)	934, 1165, 2385
BtsIMutI	CAGTG	6 cut(s)	36, 934, 1165, 2079, 2385, 2444
BtuMI	TCGCGA	1 cut(s)	2298
CaiI	CAGNNNCTG	1 cut(s)	2273
CfoI	GCGC	2 cut(s)	63, 1114
Cfr10I	RCCGGY	6 cut(s)	57, 143, 518, 1087, 1815, 1997
CpoI	CGGWCCG	1 cut(s)	1439
CseI	GACGC	4 cut(s)	3, 86, 1421, 1841
CsiI	ACCWGGT	1 cut(s)	1260
CspAI	ACCGGT	1 cut(s)	1815
CspCI	CAANNNNNGTGG	2 cut(s)	2361, 2396
CspI	CGGWCCG	1 cut(s)	1439
DdeI	CTNAG	8 cut(s)	804, 894, 912, 1352, 1650, 1688, 1710, 1964
DinI	GGCGCC	1 cut(s)	62
DpnI	GATC	9 cut(s)	841, 954, 960, 1018, 1223, 1302, 1686, 1701, 2150
DpnII	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
DrdI	GACNNNNNNGTC	1 cut(s)	1375
DseDI	GACNNNNNNGTC	1 cut(s)	1375
EaeI	YGGCCR	2 cut(s)	885, 1251
EagI	CGGCCG	1 cut(s)	1251
Eam1104I	CTCTTC	3 cut(s)	921, 1439, 2133
EarI	CTCTTC	3 cut(s)	921, 1439, 2133
EciI	GGCGGA	4 cut(s)	125, 139, 330, 429
Ecl136II	GAGCTC	2 cut(s)	978, 1365
EclXI	CGGCCG	1 cut(s)	1251
Eco130I	CCWWGG	5 cut(s)	1605, 1729, 1824, 2175, 2241
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	4 cut(s)	632, 980, 1294, 1367
Eco31I	GGTCTC	1 cut(s)	1251
Eco47I	GGWCC	5 cut(s)	55, 931, 1029, 1035, 1439
Eco52I	CGGCCG	1 cut(s)	1251
Eco53kI	GAGCTC	2 cut(s)	978, 1365
Eco57I	CTGAAG	3 cut(s)	2064, 2165, 2184
Eco72I	CACGTG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	1277
EcoICRI	GAGCTC	2 cut(s)	978, 1365
EcoNI	CCTNNNNNAGG	1 cut(s)	2338
EcoO109I	RGGNCCY	2 cut(s)	1029, 2270
EcoRII	CCWGG	4 cut(s)	1260, 1854, 1889, 2428
EcoT14I	CCWWGG	5 cut(s)	1605, 1729, 1824, 2175, 2241
EcoT38I	GRGCYC	4 cut(s)	632, 980, 1294, 1367
EgeI	GGCGCC	1 cut(s)	62
EheI	GGCGCC	1 cut(s)	62
ErhI	CCWWGG	5 cut(s)	1605, 1729, 1824, 2175, 2241
Esp3I	CGTCTC	2 cut(s)	163, 1663
FalI	AAGNNNNNCTT	2 cut(s)	1916, 1948
FaqI	GGGAC	5 cut(s)	845, 1042, 1818, 1943, 2048
FokI	GGATG	4 cut(s)	368, 1807, 2158, 2303
FriOI	GRGCYC	4 cut(s)	632, 980, 1294, 1367
FspBI	CTAG	5 cut(s)	1391, 1512, 1595, 2391, 2496
GlaI	GCGC	2 cut(s)	62, 1113
GsaI	CCCAGC	3 cut(s)	308, 867, 1297
GsuI	CTGGAG	2 cut(s)	547, 1882
HaeII	RGCGCY	1 cut(s)	64
HgaI	GACGC	4 cut(s)	3, 86, 1421, 1841
HhaI	GCGC	2 cut(s)	63, 1114
Hin1I	GRCGYC	3 cut(s)	14, 61, 78
Hin6I	GCGC	2 cut(s)	61, 1112
HinP1I	GCGC	2 cut(s)	61, 1112
HincII	GTYRAC	1 cut(s)	1981
HindII	GTYRAC	1 cut(s)	1981
HpaI	GTTAAC	1 cut(s)	1981
HphI	GGTGA	7 cut(s)	133, 508, 1198, 1408, 1841, 1987, 2398
Hpy166II	GTNNAC	4 cut(s)	934, 1813, 1981, 2113
Hpy8I	GTNNAC	4 cut(s)	934, 1813, 1981, 2113
HpyAV	CCTTC	9 cut(s)	172, 1133, 1198, 1471, 1979, 2002, 2022, 2185, 2423
HpyCH4III	ACNGT	3 cut(s)	40, 2060, 2074
HpyCH4IV	ACGT	3 cut(s)	289, 557, 2115
HpyF3I	CTNAG	8 cut(s)	804, 894, 912, 1352, 1650, 1688, 1710, 1964
HpySE526I	ACGT	3 cut(s)	289, 557, 2115
Hsp92I	GRCGYC	3 cut(s)	14, 61, 78
HspAI	GCGC	2 cut(s)	61, 1112
KasI	GGCGCC	1 cut(s)	60
KflI	GGGWCCC	1 cut(s)	1029
Kpn2I	TCCGGA	1 cut(s)	2205
KroI	GCCGGC	1 cut(s)	1087
KroNI	GCCGGC	1 cut(s)	1089
KspAI	GTTAAC	1 cut(s)	1981
Kzo9I	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
LguI	GCTCTTC	1 cut(s)	2133
Lsp1109I	GCAGC	4 cut(s)	951, 1327, 1611, 2155
LweI	GCATC	5 cut(s)	743, 1089, 1263, 2180, 2281
MabI	ACCWGGT	1 cut(s)	1260
MaeI	CTAG	5 cut(s)	1391, 1512, 1595, 2391, 2496
MaeII	ACGT	3 cut(s)	289, 557, 2115
MaeIII	GTNAC	6 cut(s)	869, 1642, 1829, 1865, 2033, 2386
MalI	GATC	9 cut(s)	841, 954, 960, 1018, 1223, 1302, 1686, 1701, 2150
MbiI	CCGCTC	3 cut(s)	129, 346, 1468
MboI	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
MflI	RGATCY	1 cut(s)	1016
MhlI	GDGCHC	6 cut(s)	295, 632, 980, 1294, 1367, 1425
MluCI	AATT	9 cut(s)	20, 595, 604, 745, 1039, 1231, 1635, 2230, 2482
Mly113I	GGCGCC	1 cut(s)	61
MlyI	GAGTC	9 cut(s)	386, 668, 886, 1073, 1289, 1456, 1688, 1855, 2395
MroI	TCCGGA	1 cut(s)	2205
MroNI	GCCGGC	1 cut(s)	1087
MseI	TTAA	3 cut(s)	68, 1913, 1980
MslI	CAYNNNNRTG	2 cut(s)	288, 1178
MspA1I	CMGCKG	2 cut(s)	1408, 1880
MspR9I	CCNGG	9 cut(s)	444, 496, 627, 1033, 1262, 1289, 1856, 1891, 2430
Mva1269I	GAATGC	1 cut(s)	2368
MvaI	CCWGG	4 cut(s)	1262, 1856, 1891, 2430
MvnI	CGCG	5 cut(s)	1073, 1112, 1244, 1415, 2298
NaeI	GCCGGC	1 cut(s)	1089
NarI	GGCGCC	1 cut(s)	61
NciI	CCSGG	5 cut(s)	444, 496, 627, 1033, 1289
NcoI	CCATGG	2 cut(s)	1729, 2241
NdeII	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
NgoMIV	GCCGGC	1 cut(s)	1087
NheI	GCTAGC	1 cut(s)	1390
NlaIV	GGNNCC	9 cut(s)	62, 148, 447, 500, 631, 1030, 1031, 1083, 1292
NmeAIII	GCCGAG	2 cut(s)	1087, 1140
NmuCI	GTSAC	5 cut(s)	1642, 1829, 1865, 2033, 2386
NruI	TCGCGA	1 cut(s)	2298
NspI	RCATGY	3 cut(s)	763, 1747, 2051
NspV	TTCGAA	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	288
PaeI	GCATGC	1 cut(s)	2051
PaeR7I	CTCGAG	1 cut(s)	1277
PceI	AGGCCT	1 cut(s)	581
PciI	ACATGT	1 cut(s)	1743
PciSI	GCTCTTC	1 cut(s)	2133
PcsI	WCGNNNNNNNCGW	9 cut(s)	171, 687, 690, 705, 825, 855, 996, 1373, 1839
PctI	GAATGC	1 cut(s)	2368
PdiI	GCCGGC	1 cut(s)	1089
PfeI	GAWTC	4 cut(s)	686, 1010, 1874, 2264
PflFI	GACNNNGTC	5 cut(s)	80, 895, 1033, 1372, 2060
PinAI	ACCGGT	1 cut(s)	1815
Ple19I	CGATCG	1 cut(s)	961
PleI	GAGTC	9 cut(s)	386, 667, 886, 1072, 1288, 1455, 1688, 1855, 2395
PluTI	GGCGCC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	290
PmlI	CACGTG	1 cut(s)	290
PpsI	GAGTC	9 cut(s)	386, 667, 886, 1072, 1288, 1455, 1688, 1855, 2395
Ppu21I	YACGTR	2 cut(s)	290, 2116
PpuMI	RGGWCCY	1 cut(s)	1029
PscI	ACATGT	1 cut(s)	1743
Psp124BI	GAGCTC	2 cut(s)	980, 1367
Psp5II	RGGWCCY	1 cut(s)	1029
Psp6I	CCWGG	4 cut(s)	1260, 1854, 1889, 2428
PspCI	CACGTG	1 cut(s)	290
PspFI	CCCAGC	3 cut(s)	304, 863, 1293
PspGI	CCWGG	4 cut(s)	1260, 1854, 1889, 2428
PspN4I	GGNNCC	9 cut(s)	62, 148, 447, 500, 631, 1030, 1031, 1083, 1292
PspOMI	GGGCCC	1 cut(s)	1290
PspPPI	RGGWCCY	1 cut(s)	1029
PspXI	VCTCGAGB	1 cut(s)	1277
PsrI	GAACNNNNNNTAC	2 cut(s)	542, 574
PstI	CTGCAG	1 cut(s)	941
PstNI	CAGNNNCTG	1 cut(s)	2273
PsuI	RGATCY	1 cut(s)	1016
PsyI	GACNNNGTC	5 cut(s)	80, 895, 1033, 1372, 2060
PvuI	CGATCG	1 cut(s)	961
PvuII	CAGCTG	2 cut(s)	1408, 1880
RruI	TCGCGA	1 cut(s)	2298
RseI	CAYNNNNRTG	2 cut(s)	288, 1178
Rsr2I	CGGWCCG	1 cut(s)	1439
RsrII	CGGWCCG	1 cut(s)	1439
SacI	GAGCTC	2 cut(s)	980, 1367
SapI	GCTCTTC	1 cut(s)	2133
SaqAI	TTAA	3 cut(s)	68, 1913, 1980
Sau3AI	GATC	9 cut(s)	839, 952, 958, 1016, 1221, 1300, 1684, 1699, 2148
ScaI	AGTACT	1 cut(s)	1147
SchI	GAGTC	9 cut(s)	386, 668, 886, 1073, 1289, 1456, 1688, 1855, 2395
ScrFI	CCNGG	9 cut(s)	444, 496, 627, 1033, 1262, 1289, 1856, 1891, 2430
SduI	GDGCHC	6 cut(s)	295, 632, 980, 1294, 1367, 1425
SexAI	ACCWGGT	1 cut(s)	1260
SfaNI	GCATC	5 cut(s)	743, 1089, 1263, 2180, 2281
SfcI	CTRYAG	2 cut(s)	937, 964
SfoI	GGCGCC	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	1277
SfuI	TTCGAA	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	518
SinI	GGWCC	5 cut(s)	55, 931, 1029, 1035, 1439
SlaI	CTCGAG	1 cut(s)	1277
SmiMI	CAYNNNNRTG	2 cut(s)	288, 1178
SmlI	CTYRAG	3 cut(s)	1277, 1319, 1339
SmoI	CTYRAG	3 cut(s)	1277, 1319, 1339
SpeI	ACTAGT	1 cut(s)	2495
SphI	GCATGC	1 cut(s)	2051
Sse9I	AATT	9 cut(s)	20, 595, 604, 745, 1039, 1231, 1635, 2230, 2482
SseBI	AGGCCT	1 cut(s)	581
SspDI	GGCGCC	1 cut(s)	60
SspMI	CTAG	5 cut(s)	1391, 1512, 1595, 2391, 2496
SstI	GAGCTC	2 cut(s)	980, 1367
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	9 cut(s)	442, 494, 625, 1031, 1260, 1287, 1854, 1889, 2428
StyI	CCWWGG	5 cut(s)	1605, 1729, 1824, 2175, 2241
TaaI	ACNGT	3 cut(s)	40, 2060, 2074
TaiI	ACGT	3 cut(s)	292, 560, 2118
TaqII	GACCGA	1 cut(s)	1057
TasI	AATT	9 cut(s)	20, 595, 604, 745, 1039, 1231, 1635, 2230, 2482
TatI	WGTACW	6 cut(s)	741, 1145, 1569, 1740, 1789, 2492
TfiI	GAWTC	4 cut(s)	686, 1010, 1874, 2264
Tru1I	TTAA	3 cut(s)	68, 1913, 1980
Tru9I	TTAA	3 cut(s)	68, 1913, 1980
TscAI	CASTG	6 cut(s)	43, 941, 1165, 2079, 2385, 2451
TseFI	GTSAC	5 cut(s)	1642, 1829, 1865, 2033, 2386
TseI	GCWGC	5 cut(s)	6, 939, 1315, 1624, 2168
Tsp45I	GTSAC	5 cut(s)	1642, 1829, 1865, 2033, 2386
TspDTI	ATGAA	5 cut(s)	86, 1190, 1785, 1937, 2089
TspGWI	ACGGA	2 cut(s)	577, 606
TspRI	CASTG	6 cut(s)	43, 941, 1165, 2079, 2385, 2451
Tth111I	GACNNNGTC	5 cut(s)	80, 895, 1033, 1372, 2060
VpaK11BI	GGWCC	5 cut(s)	55, 931, 1029, 1035, 1439
XagI	CCTNNNNNAGG	1 cut(s)	2338
XapI	RAATTY	2 cut(s)	604, 1231
XceI	RCATGY	3 cut(s)	763, 1747, 2051
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1946
XhoI	CTCGAG	1 cut(s)	1277
XspI	CTAG	5 cut(s)	1391, 1512, 1595, 2391, 2496
ZrmI	AGTACT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.