Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415981.1

Orthogroup ID

OG0010675

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1038

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 757 bp

atgaagggtgctggtatgaactcatcagatagcaataactacaaaaggacctcatcttcagacctgtcgactatgctaatgggaagcaataccagtactactagtacttcatacagcattatcagccagcaggcgaaccttgaaaaccatcatcaacaactaccaaagcttgaaaacttccttggccggcattcttttgcggatcatgacagcagcagtgctggtcatgattacatgtttgatatgaataatggacccggtccagttagcagtaatgttatgaatactaaaactaatagtaacaatattgggttgtccatgatcaagacgtggctgagaaatcaaccttctcagccgcgcgataaccaccatcagctggagcaggagagcaagaatagtaaggagagcagaaatcaaccacagagtagtctatcgctctcaatgggtactggatcgcttcaaacagttactactgcaactgcaggtggtgctgctactggagaaactactagttcatcagataaaaatactaaacagtcaccagtggtgacagccacaacaacaacggggactgatgcccaaactcagagtactggtggtgctattgaggccgttcccagaaaggccattgatacatttggccaaaggacatctatataccgtggtgtaaccaggcacagatggacaggtagatatgaagcccatctatgggataatagttgccgaagagaaggacaaactcgcaagggaaggcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

252

Amino Acids

27.42

Weight (kDa)

9.55

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17430 AT5G17430
fragaria_vesca	FvH4_6g00160 FvH4_6g00160
malus_domestica	MD04G1247700.v1.1
prunus_persica	Prupe.6G364100_v2.0.a1
pyrus_communis	pycom12g24110
rosa_chinensis	RchiOBHm_Chr3g0447531
rosa_laevigata	RLG00000025991
rosa_multiflora	Rmu_co8415981.1_g000001 Rmu_sc0003550.1_g000011 Rmu_sc0006572.1_g000001 Rmu_sc0037294.1_g000005
rosa_roxburghii	Rroxscaffold_6G00425750
rosa_rugosa	Rorug02G0602600
rosa_samantha	Rh3AG002900 Rh3BG002400 Rh3CG002700 Rh3DG002800
rosa_wichuraiana	Rw3G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	2 cut(s)	358, 360
AciI	CCGC	2 cut(s)	200, 356
AclWI	GGATC	2 cut(s)	210, 460
AcoI	YGGCCR	2 cut(s)	184, 640
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	4 cut(s)	97, 106, 448, 592
AfiI	CCNNNNNNNGG	3 cut(s)	376, 708, 709
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	143, 173, 461
AhlI	ACTAGT	2 cut(s)	101, 509
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	1 cut(s)	671
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	2 cut(s)	169, 376
AluI	AGCT	2 cut(s)	169, 376
AlwI	GGATC	2 cut(s)	210, 460
AoxI	GGCC	4 cut(s)	184, 609, 624, 640
ApeKI	GCWGC	2 cut(s)	213, 491
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	3 cut(s)	48, 254, 260
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	531, 559
AvaII	GGWCC	3 cut(s)	48, 254, 260
BalI	TGGCCA	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	225, 478
BccI	CCATC	4 cut(s)	156, 378, 675, 711
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	258
BcuI	ACTAGT	2 cut(s)	101, 509
BfaI	CTAG	2 cut(s)	102, 510
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	3 cut(s)	214, 356, 492
BlsI	GCNGC	3 cut(s)	215, 357, 493
BmcAI	AGTACT	3 cut(s)	97, 106, 592
Bme1390I	CCNGG	2 cut(s)	258, 673
Bme18I	GGWCC	3 cut(s)	48, 254, 260
BmgBI	CACGTC	1 cut(s)	330
BmgT120I	GGNCC	3 cut(s)	48, 254, 260
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	258, 673
BmsI	GCATC	1 cut(s)	565
BpmI	CTGGAG	2 cut(s)	398, 519
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	181, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 708, 709
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	6 cut(s)	93, 263, 454, 502, 542, 598
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	2 cut(s)	181, 661
BseLI	CCNNNNNNNGG	3 cut(s)	376, 708, 709
BseMII	CTCAG	3 cut(s)	326, 365, 599
BseNI	ACTGG	6 cut(s)	93, 263, 454, 502, 542, 598
BseXI	GCAGC	2 cut(s)	225, 478
Bsh1236I	CGCG	2 cut(s)	358, 360
BshFI	GGCC	4 cut(s)	186, 611, 626, 642
BsiSI	CCGG	2 cut(s)	187, 258
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	3 cut(s)	376, 708, 709
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	4 cut(s)	186, 611, 626, 642
Bsp143I	GATC	3 cut(s)	202, 321, 452
BspACI	CCGC	2 cut(s)	200, 356
BspANI	GGCC	4 cut(s)	186, 611, 626, 642
BspCNI	CTCAG	3 cut(s)	327, 364, 598
BspFNI	CGCG	2 cut(s)	358, 360
BspHI	TCATGA	2 cut(s)	205, 226
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	210, 460
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	6 cut(s)	93, 263, 454, 502, 542, 598
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	181, 661
BssMI	GATC	3 cut(s)	202, 321, 452
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	3 cut(s)	466, 537, 662
Bst6I	CTCTTC	1 cut(s)	721
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	128, 132, 188
BstDEI	CTNAG	3 cut(s)	335, 351, 585
BstDSI	CCRYGG	1 cut(s)	661
BstFNI	CGCG	2 cut(s)	358, 360
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	3 cut(s)	205, 324, 455
BstMBI	GATC	3 cut(s)	202, 321, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 488, 608
BstNI	CCWGG	1 cut(s)	673
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	256, 671
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	2 cut(s)	358, 360
BstV1I	GCAGC	2 cut(s)	225, 478
BsuRI	GGCC	4 cut(s)	186, 611, 626, 642
BtgI	CCRYGG	1 cut(s)	661
BtrI	CACGTC	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 549
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	128, 132, 188
CciI	TCATGA	2 cut(s)	205, 226
CfoI	GCGC	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	48, 254, 260
Csp6I	GTAC	4 cut(s)	96, 105, 447, 591
CviAII	CATG	4 cut(s)	206, 227, 235, 319
CviQI	GTAC	4 cut(s)	96, 105, 447, 591
DdeI	CTNAG	3 cut(s)	335, 351, 585
DpnI	GATC	3 cut(s)	204, 323, 454
DpnII	GATC	3 cut(s)	202, 321, 452
EaeI	YGGCCR	2 cut(s)	184, 640
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	181
Eco47I	GGWCC	3 cut(s)	48, 254, 260
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	671
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	4 cut(s)	209, 230, 238, 322
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	4 cut(s)	205, 226, 234, 318
FbaI	TGATCA	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	214, 356, 492
Fsp4HI	GCNGC	3 cut(s)	214, 356, 492
FspBI	CTAG	2 cut(s)	102, 510
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	214, 356, 492
GsuI	CTGGAG	2 cut(s)	398, 519
HaeIII	GGCC	4 cut(s)	186, 611, 626, 642
HapII	CCGG	2 cut(s)	187, 258
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	209, 230, 238, 322
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	167
HpaII	CCGG	2 cut(s)	187, 258
HphI	GGTGA	2 cut(s)	531, 559
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	4 cut(s)	28, 61, 520, 588
Hpy188III	TCNNGA	3 cut(s)	206, 227, 325
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	3 cut(s)	357, 725, 744
HpyCH4III	ACNGT	3 cut(s)	466, 537, 662
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	476, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 488, 608
HpyF3I	CTNAG	3 cut(s)	335, 351, 585
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	4 cut(s)	209, 230, 238, 322
HspAI	GCGC	1 cut(s)	358
KroI	GCCGGC	1 cut(s)	186
KroNI	GCCGGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	202, 321, 452
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	225, 478
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	102, 510
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	5 cut(s)	299, 466, 537, 547, 667
MalI	GATC	3 cut(s)	204, 323, 454
MboI	GATC	3 cut(s)	202, 321, 452
MboII	GAAGA	2 cut(s)	48, 738
MlsI	TGGCCA	1 cut(s)	642
MluNI	TGGCCA	1 cut(s)	642
MnlI	CCTC	2 cut(s)	61, 601
Mox20I	TGGCCA	1 cut(s)	642
MroNI	GCCGGC	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	2 cut(s)	187, 258
MspR9I	CCNGG	2 cut(s)	258, 673
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	673
MvnI	CGCG	2 cut(s)	358, 360
MwoI	GCNNNNNNNGC	3 cut(s)	123, 488, 608
NaeI	GCCGGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	202, 321, 452
NgoMIV	GCCGGC	1 cut(s)	186
NlaIII	CATG	4 cut(s)	209, 230, 238, 322
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	537, 547
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	2 cut(s)	205, 226
PaqCI	CACCTGC	1 cut(s)	473
PciI	ACATGT	1 cut(s)	234
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	258
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	215, 357, 493
PpuMI	RGGWCCY	1 cut(s)	48
PscI	ACATGT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	3 cut(s)	48, 254, 260
PspPPI	RGGWCCY	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	484
PsyI	GACNNNGTC	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	4 cut(s)	97, 106, 448, 592
RsaNI	GTAC	4 cut(s)	96, 105, 447, 591
SalI	GTCGAC	1 cut(s)	67
SatI	GCNGC	3 cut(s)	214, 356, 492
Sau3AI	GATC	3 cut(s)	202, 321, 452
Sau96I	GGNCC	3 cut(s)	48, 254, 260
ScaI	AGTACT	3 cut(s)	97, 106, 592
ScrFI	CCNGG	2 cut(s)	258, 673
SetI	ASST	9 cut(s)	53, 66, 141, 171, 332, 349, 378, 487, 691
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	3 cut(s)	48, 254, 260
SpeI	ACTAGT	2 cut(s)	101, 509
SsiI	CCGC	2 cut(s)	200, 356
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	2 cut(s)	102, 510
StyD4I	CCNGG	2 cut(s)	256, 671
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	466, 537, 662
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	68
TatI	WGTACW	3 cut(s)	95, 104, 590
TauI	GCSGC	1 cut(s)	358
TscAI	CASTG	2 cut(s)	223, 549
TseFI	GTSAC	2 cut(s)	537, 547
TseI	GCWGC	2 cut(s)	213, 491
Tsp45I	GTSAC	2 cut(s)	537, 547
TspDTI	ATGAA	7 cut(s)	17, 32, 99, 260, 296, 504, 711
TspRI	CASTG	2 cut(s)	223, 549
Tth111I	GACNNNGTC	1 cut(s)	258
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	48, 254, 260
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	2 cut(s)	102, 510
ZrmI	AGTACT	3 cut(s)	97, 106, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.