Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010675

Physical Location & Seq

Genomic Coordinates Forward (+)

46752189 .. 46755971

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGAACTGGTTGGGTTTCTCTCTTTCCCCTCAAGAAGATGATCATGCACCAATATCGCACCAGCTGGCTAACCAAGAGACCTTAGCCTCTCGCCTTGGCTTCAACTCCAATGAAATCCACGGTGCCGGTGGTGGCACTGATGTCTCCGGTGGCGGAAGCAGTGAGTGCTTTGATCTTACTAATTCTGACTCCACTGCTTCTCTCAATCACCACCTCACTCCATCTATTTTTGGCATACATGAAGCTGCAACTTTCAACAGGAACAATGATCATATCCACTCCCAAGATTGGATTATGAAGGGTGCTGGTATGAACTCATCAGATAGCAATAACTACAAAAGGACCTCATCTTCAGACCTGTCGACTATGCTAATGGGAAGTAGTACCACTACTAGTACTTCATGCAGCATTATCAGCCAGCAGGGGAACCTTGAAAACCATCATCAACAACTACCAAAGCTTGAAAACTTCCTTGGCCGGCATTCTTTTGCGGATCATGACCGCAGCAGTGCTGGTCATGATTACATGTTTGATATGAATAATGGACCGGGTCCAGTTAGCAGTAATGTTACGAATACTAATACTAATAGTAACAATATTGGGTTGTCCATGATCAAGACGTGGCTGAGAAATCAACCTTCTCAGCCGCGCGATAACCACCATCAGCTGGAGCAGGAGAGCAAGAATAGTAAGGAGAGCAGAAATCAACCACAGAGTAGTCTATCGCTCTCAATGGGTACTGGATCGCTTCAAACTGTTACTACTGCAACTGCAGGTGGTGTTGCTACTGCCGCTACTGGAGATACTACTTGTTCATCAGATACGAATACTAAGCAGTCACCAGTGGTGACAGCCACAACAACAACGGGGACTGATGCCCAAACTCAAAGTACTGGTGGTGCTATTGAGGCCGTGCCCAGAAAGGCCATTGATACATTTGGCCAAAGGACATCTATATACCGTGGTGTAACCAGGCACAGATGGACAGGTAGATATGAAGCCCATCTATGGGATAATAGTTGCAGAAGAGAAGGACAAACTCGCAAGGGAAGGCAAGGTGGTTATGACAAAGAAGACAAAGCGGCTAGAGCTTATGACTTAGCAGCATTGAAATATTGGGGCACCACAACCACTACCAACTTCCCGATCAGTAGCTATGAGAAAGAGATTGATGAAATGAAGCCCATGACAAGACAGGAGTATGTTGCATCTTTGAGGAGAAAGAGTAGCGGATTTTCTCGGGGTGCATCCATTTATCGTGGGGTGACAAGGCACCACCAGCATGGGAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGGAACAAAGATTTGTACCTAGGAACTTTCAGCACCCAAGAGGAAGCAGCGGAGGCATATGACATTGCTGCCATAAAGTTCCGAGGACTAAATGCAGTAACCAACTTTGACATGAGCAGATATGATGTCAAGTCCATTCTGGAGAGCAGCGCATTGCCCATCACTACTGGTGCCACTGCAAAGCGATTGAAAGACGTTCAGCAGCAGCAGCCGCCTCCTCCTGCAGATCATCATCATCAGATCATGTTGTCGTCTGTGCTGGATCATCACGGACAGATTATCAGATCCTCATCATCAACAGAACATGACATCATGAGTAATGTGTACTCAGCATATGGATCTTATGGGGCCCAGCAGGGGTGCAGTTGGCCAACTCTTGCATTCAACCAAGCCCAAGCTCAAGCAGCTGCTGCTCCTCCTCATCAAGCGCCTTTTGCCGCTGGTATCAATGGCATGCAGTTGCACTACTCGCCGTATGGATATGGATATGGTAATGCACATGCACAGAGGGTTTGGTGCAAGCAAGAGCAAGATACTAATTCAAATCAGGAAAGCAGCTTTCATCATCAGGATGATGATCATCTTCGTCAACAACTCCAGTTGGGAGGTACCCACAATTTCTTTCATGACCATGATCAGCAGCAGCAGCAGCAGACTAGTGGCCTTATGGGACTAATGGATTCTTCAGCAGCATCTATGGAACACAGCTCAGGTTCAAATTCTGTCATATATAGTGGTGGAGATCACCATGGTAATAATAATGGGTATGGAAGCAGTACTACAGGGACTGGTGGTGGCTATATAATGCCCATGGTTATGAGTACTGTTGTAGCCAATGATGACCAAAATCAAGCTGATGGAAATAATAACAATATCAATGGTTTTGGAGATGGTGATGATCAGGAGGCCAATATTAAGGCGCAGCAGCTTGGTTATGATCATCATCATCAAAATATGTTTCTTGGTTCAAGTAGTACTACAGATCCCGCTTATCAGCATCACGCAAGCAACAGGAACTTGTATTACCATCTTCCCGTACAGGATGATCAGCATGAATCGTCGGCAGTGGCAGTAGCTACTAGTAGTACTACATGTAACATGAATTGGGTACCAACAGCTGTTCCAACTCTTGCTCATCCTACTTTTACAGTCTGGAACGACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

827

Amino Acids

90.2

Weight (kDa)

6.09

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	320 - 374	1.3e-06	AP2 domain
AP2	PF00847	419 - 468	1.1e-08	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17430 AT5G17430
fragaria_vesca	FvH4_6g00160 FvH4_6g00160
malus_domestica	MD04G1247700.v1.1
prunus_persica	Prupe.6G364100_v2.0.a1
pyrus_communis	pycom12g24110
rosa_chinensis	RchiOBHm_Chr3g0447531
rosa_laevigata	RLG00000025991
rosa_multiflora	Rmu_co8415981.1_g000001 Rmu_sc0003550.1_g000011 Rmu_sc0006572.1_g000001 Rmu_sc0037294.1_g000005
rosa_roxburghii	Rroxscaffold_6G00425750
rosa_rugosa	Rorug02G0602600
rosa_samantha	Rh3AG002900 Rh3BG002400 Rh3CG002700 Rh3DG002800
rosa_wichuraiana	Rw3G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	764
Acc65I	GGTACC	2 cut(s)	1925, 2425
AccB1I	GGYRCC	6 cut(s)	122, 1121, 1272, 1487, 1925, 2425
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	2 cut(s)	649, 651
AclWI	GGATC	6 cut(s)	501, 751, 1587, 1596, 1663, 2294
AcoI	YGGCCR	3 cut(s)	475, 940, 1685
AcsI	RAATTY	1 cut(s)	2035
AcuI	CTGAAG	2 cut(s)	336, 1986
AfiI	CCNNNNNNNGG	5 cut(s)	288, 667, 1008, 1009, 1674
AflIII	ACRYGT	2 cut(s)	525, 2408
AhlI	ACTAGT	3 cut(s)	392, 1973, 2396
AjiI	CACGTC	1 cut(s)	621
AjnI	CCWGG	1 cut(s)	971
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
Alw26I	GTCTC	2 cut(s)	71, 148
AlwI	GGATC	6 cut(s)	501, 751, 1587, 1596, 1663, 2294
AlwNI	CAGNNNCTG	2 cut(s)	1727, 2105
Ama87I	CYCGRG	1 cut(s)	1239
AoxI	GGCC	8 cut(s)	475, 909, 924, 940, 1665, 1685, 1978, 2223
ApaI	GGGCCC	1 cut(s)	1669
ApoI	RAATTY	1 cut(s)	2035
Asp718I	GGTACC	2 cut(s)	1925, 2425
AspA2I	CCTAGG	1 cut(s)	1336
AspLEI	GCGC	4 cut(s)	651, 1469, 1747, 2239
AspS9I	GGNCC	5 cut(s)	342, 545, 551, 1665, 1666
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	6 cut(s)	200, 831, 859, 1276, 2054, 2222
AvaI	CYCGRG	1 cut(s)	1239
AvaII	GGWCC	3 cut(s)	342, 545, 551
AvrII	CCTAGG	1 cut(s)	1336
BaeGI	GKGCMC	3 cut(s)	918, 1124, 1669
BalI	TGGCCA	2 cut(s)	942, 1687
BanI	GGYRCC	6 cut(s)	122, 1121, 1272, 1487, 1925, 2425
BanII	GRGCYC	1 cut(s)	1669
BarI	GAAGNNNNNNTAC	2 cut(s)	2080, 2112
BbsI	GAAGAC	1 cut(s)	1080
BceAI	ACGGC	2 cut(s)	896, 1774
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	973
BclI	TGATCA	8 cut(s)	40, 268, 612, 1894, 1951, 2215, 2254, 2362
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	71, 148
BcuI	ACTAGT	3 cut(s)	392, 1973, 2396
BfaI	CTAG	5 cut(s)	393, 1086, 1337, 1974, 2397
BfmI	CTRYAG	4 cut(s)	771, 1539, 2097, 2295
BfoI	RGCGCY	1 cut(s)	1748
BfuAI	ACCTGC	1 cut(s)	764
BlnI	CCTAGG	1 cut(s)	1336
BmcAI	AGTACT	6 cut(s)	397, 892, 2095, 2140, 2293, 2404
Bme1390I	CCNGG	2 cut(s)	549, 973
Bme18I	GGWCC	3 cut(s)	342, 545, 551
BmeT110I	CYCGRG	1 cut(s)	1239
BmgBI	CACGTC	1 cut(s)	621
BmgT120I	GGNCC	5 cut(s)	342, 545, 551, 1665, 1666
BmrFI	CCNGG	2 cut(s)	549, 973
BmsI	GCATC	5 cut(s)	865, 1217, 1256, 2018, 2323
BpiI	GAAGAC	1 cut(s)	1080
BpmI	CTGGAG	4 cut(s)	689, 819, 1478, 1898
Bpu10I	CCTNAGC	2 cut(s)	82, 2026
BpuEI	CTTGAG	2 cut(s)	15, 1701
BpuMI	CCSGG	1 cut(s)	549
BsaBI	GATNNNNATC	5 cut(s)	1548, 1606, 1893, 1896, 2259
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	8 cut(s)	94, 118, 472, 961, 1336, 1399, 2065, 2127
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	1210, 1240
Bsc4I	CCNNNNNNNGG	5 cut(s)	288, 667, 1008, 1009, 1674
Bse118I	RCCGGY	2 cut(s)	125, 477
Bse1I	ACTGG	9 cut(s)	11, 554, 745, 802, 842, 898, 1489, 1915, 2110
Bse3DI	GCAATG	2 cut(s)	1380, 1469
Bse8I	GATNNNNATC	5 cut(s)	1548, 1606, 1893, 1896, 2259
BseBI	CCWGG	1 cut(s)	973
BseDI	CCNNGG	8 cut(s)	94, 118, 472, 961, 1336, 1399, 2065, 2127
BseGI	GGATG	4 cut(s)	1247, 1894, 2365, 2452
BseJI	GATNNNNATC	5 cut(s)	1548, 1606, 1893, 1896, 2259
BseLI	CCNNNNNNNGG	5 cut(s)	288, 667, 1008, 1009, 1674
BseMI	GCAATG	2 cut(s)	1380, 1469
BseMII	CTCAG	4 cut(s)	617, 656, 1659, 2040
BseNI	ACTGG	9 cut(s)	11, 554, 745, 802, 842, 898, 1489, 1915, 2110
BseRI	GAGGAG	4 cut(s)	1231, 1524, 1722, 1725
BseSI	GKGCMC	3 cut(s)	918, 1124, 1669
BseYI	CCCAGC	1 cut(s)	1668
BsgI	GTGCAG	1 cut(s)	1699
Bsh1236I	CGCG	2 cut(s)	649, 651
BshFI	GGCC	8 cut(s)	477, 911, 926, 942, 1667, 1687, 1980, 2225
BshNI	GGYRCC	6 cut(s)	122, 1121, 1272, 1487, 1925, 2425
BsiHKCI	CYCGRG	1 cut(s)	1239
BsiSI	CCGG	4 cut(s)	126, 147, 478, 548
BslFI	GGGAC	3 cut(s)	883, 2001, 2116
BslI	CCNNNNNNNGG	5 cut(s)	288, 667, 1008, 1009, 1674
BsmAI	GTCTC	2 cut(s)	71, 148
BsmFI	GGGAC	3 cut(s)	883, 2001, 2116
BsmI	GAATGC	2 cut(s)	481, 1697
BsnI	GGCC	8 cut(s)	477, 911, 926, 942, 1667, 1687, 1980, 2225
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	1239
Bsp120I	GGGCCC	1 cut(s)	1665
Bsp1286I	GDGCHC	3 cut(s)	918, 1124, 1669
Bsp19I	CCATGG	2 cut(s)	2065, 2127
BspANI	GGCC	8 cut(s)	477, 911, 926, 942, 1667, 1687, 1980, 2225
BspCNI	CTCAG	4 cut(s)	618, 655, 1658, 2039
BspFNI	CGCG	2 cut(s)	649, 651
BspHI	TCATGA	4 cut(s)	496, 517, 1629, 1942
BspMAI	CTGCAG	2 cut(s)	775, 1543
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	6 cut(s)	501, 751, 1587, 1596, 1663, 2294
BspT107I	GGYRCC	6 cut(s)	122, 1121, 1272, 1487, 1925, 2425
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	1380, 1469
BsrFI	RCCGGY	2 cut(s)	125, 477
BsrI	ACTGG	9 cut(s)	11, 554, 745, 802, 842, 898, 1489, 1915, 2110
BssAI	RCCGGY	2 cut(s)	125, 477
BssECI	CCNNGG	8 cut(s)	94, 118, 472, 961, 1336, 1399, 2065, 2127
BssT1I	CCWWGG	5 cut(s)	94, 472, 1336, 2065, 2127
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	5 cut(s)	122, 757, 962, 2143, 2467
Bst6I	CTCTTC	1 cut(s)	1021
BstAPI	GCANNNNNTGC	2 cut(s)	165, 1727
BstC8I	GCNNGC	7 cut(s)	66, 419, 479, 1296, 1772, 1838, 2323
BstDEI	CTNAG	7 cut(s)	82, 626, 642, 831, 1099, 1645, 2026
BstDSI	CCRYGG	4 cut(s)	118, 961, 2065, 2127
BstF5I	GGATG	4 cut(s)	1247, 1894, 2365, 2452
BstFNI	CGCG	2 cut(s)	649, 651
BstH2I	RGCGCY	1 cut(s)	1748
BstHHI	GCGC	4 cut(s)	651, 1469, 1747, 2239
BstMAI	GTCTC	2 cut(s)	71, 148
BstNI	CCWGG	1 cut(s)	973
BstNSI	RCATGY	4 cut(s)	529, 1774, 1820, 2412
BstSCI	CCNGG	2 cut(s)	547, 971
BstSFI	CTRYAG	4 cut(s)	771, 1539, 2097, 2295
BstSLI	GKGCMC	3 cut(s)	918, 1124, 1669
BstUI	CGCG	2 cut(s)	649, 651
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	3 cut(s)	1601, 1655, 2299
BstXI	CCANNNNNNTGG	1 cut(s)	1283
BstYI	RGATCY	3 cut(s)	1601, 1655, 2299
BsuRI	GGCC	8 cut(s)	477, 911, 926, 942, 1667, 1687, 1980, 2225
BtgI	CCRYGG	4 cut(s)	118, 961, 2065, 2127
BtrI	CACGTC	1 cut(s)	621
BtsCI	GGATG	4 cut(s)	1247, 1894, 2365, 2452
BtsI	GCAGTG	5 cut(s)	166, 192, 514, 1491, 2388
BtsIMutI	CAGTG	7 cut(s)	135, 166, 192, 514, 849, 1491, 2388
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	7 cut(s)	66, 419, 479, 1296, 1772, 1838, 2323
CaiI	CAGNNNCTG	2 cut(s)	1727, 2105
CciI	TCATGA	4 cut(s)	496, 517, 1629, 1942
CfoI	GCGC	4 cut(s)	651, 1469, 1747, 2239
Cfr10I	RCCGGY	2 cut(s)	125, 477
Cfr13I	GGNCC	5 cut(s)	342, 545, 551, 1665, 1666
DdeI	CTNAG	7 cut(s)	82, 626, 642, 831, 1099, 1645, 2026
EaeI	YGGCCR	3 cut(s)	475, 940, 1685
Eam1104I	CTCTTC	1 cut(s)	1021
EarI	CTCTTC	1 cut(s)	1021
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	5 cut(s)	94, 472, 1336, 2065, 2127
Eco24I	GRGCYC	1 cut(s)	1669
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	342, 545, 551
Eco57I	CTGAAG	2 cut(s)	336, 1986
Eco88I	CYCGRG	1 cut(s)	1239
EcoO109I	RGGNCCY	2 cut(s)	342, 1665
EcoRII	CCWGG	1 cut(s)	971
EcoT14I	CCWWGG	5 cut(s)	94, 472, 1336, 2065, 2127
EcoT38I	GRGCYC	1 cut(s)	1669
ErhI	CCWWGG	5 cut(s)	94, 472, 1336, 2065, 2127
FaqI	GGGAC	3 cut(s)	883, 2001, 2116
FauI	CCCGC	1 cut(s)	2311
FauNDI	CATATG	2 cut(s)	1375, 1651
FbaI	TGATCA	8 cut(s)	40, 268, 612, 1894, 1951, 2215, 2254, 2362
FblI	GTMKAC	1 cut(s)	362
FokI	GGATG	4 cut(s)	1234, 1901, 2372, 2439
FriOI	GRGCYC	1 cut(s)	1669
FspBI	CTAG	5 cut(s)	393, 1086, 1337, 1974, 2397
GlaI	GCGC	4 cut(s)	650, 1468, 1746, 2238
GsaI	CCCAGC	1 cut(s)	1672
GsuI	CTGGAG	4 cut(s)	689, 819, 1478, 1898
HaeII	RGCGCY	1 cut(s)	1748
HaeIII	GGCC	8 cut(s)	477, 911, 926, 942, 1667, 1687, 1980, 2225
HapII	CCGG	4 cut(s)	126, 147, 478, 548
HhaI	GCGC	4 cut(s)	651, 1469, 1747, 2239
Hin6I	GCGC	4 cut(s)	649, 1467, 1745, 2237
HinP1I	GCGC	4 cut(s)	649, 1467, 1745, 2237
HincII	GTYRAC	2 cut(s)	363, 1907
HindII	GTYRAC	2 cut(s)	363, 1907
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	188, 1997, 2372
HpaII	CCGG	4 cut(s)	126, 147, 478, 548
HphI	GGTGA	6 cut(s)	200, 831, 859, 1276, 2054, 2222
Hpy166II	GTNNAC	3 cut(s)	363, 1642, 1907
Hpy188I	TCNGA	7 cut(s)	187, 322, 355, 820, 1400, 1557, 1601
Hpy8I	GTNNAC	3 cut(s)	363, 1642, 1907
Hpy99I	CGWCG	1 cut(s)	2380
HpyAV	CCTTC	4 cut(s)	292, 648, 1025, 1044
HpyCH4III	ACNGT	5 cut(s)	122, 757, 962, 2143, 2467
HpyCH4IV	ACGT	2 cut(s)	620, 1512
HpyF3I	CTNAG	7 cut(s)	82, 626, 642, 831, 1099, 1645, 2026
HpySE526I	ACGT	2 cut(s)	620, 1512
HspAI	GCGC	4 cut(s)	649, 1467, 1745, 2237
KpnI	GGTACC	2 cut(s)	1929, 2429
KroI	GCCGGC	1 cut(s)	477
KroNI	GCCGGC	1 cut(s)	479
Ksp22I	TGATCA	8 cut(s)	40, 268, 612, 1894, 1951, 2215, 2254, 2362
LmnI	GCTCC	2 cut(s)	670, 1735
LweI	GCATC	5 cut(s)	865, 1217, 1256, 2018, 2323
MaeI	CTAG	5 cut(s)	393, 1086, 1337, 1974, 2397
MaeII	ACGT	2 cut(s)	620, 1512
MaeIII	GTNAC	9 cut(s)	568, 590, 757, 837, 847, 967, 1264, 1414, 2411
MboII	GAAGA	7 cut(s)	47, 342, 1038, 1085, 1892, 1992, 2339
MflI	RGATCY	3 cut(s)	1601, 1655, 2299
MhlI	GDGCHC	3 cut(s)	918, 1124, 1669
MlsI	TGGCCA	2 cut(s)	942, 1687
MluCI	AATT	5 cut(s)	181, 1855, 1933, 2035, 2419
MluNI	TGGCCA	2 cut(s)	942, 1687
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	2465
Mox20I	TGGCCA	2 cut(s)	942, 1687
MroNI	GCCGGC	1 cut(s)	477
MscI	TGGCCA	2 cut(s)	942, 1687
MseI	TTAA	1 cut(s)	2232
MslI	CAYNNNNRTG	4 cut(s)	1281, 1887, 1947, 2132
Msp20I	TGGCCA	2 cut(s)	942, 1687
MspA1I	CMGCKG	6 cut(s)	64, 667, 1367, 1724, 1757, 2435
MspI	CCGG	4 cut(s)	126, 147, 478, 548
MspR9I	CCNGG	2 cut(s)	549, 973
Mva1269I	GAATGC	2 cut(s)	481, 1697
MvaI	CCWGG	1 cut(s)	973
MvnI	CGCG	2 cut(s)	649, 651
NaeI	GCCGGC	1 cut(s)	479
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	2 cut(s)	2065, 2127
NdeI	CATATG	2 cut(s)	1375, 1651
NgoMIV	GCCGGC	1 cut(s)	477
NmuCI	GTSAC	3 cut(s)	837, 847, 1264
NspI	RCATGY	4 cut(s)	529, 1774, 1820, 2412
PaeI	GCATGC	1 cut(s)	1774
PagI	TCATGA	4 cut(s)	496, 517, 1629, 1942
PaqCI	CACCTGC	1 cut(s)	764
PciI	ACATGT	2 cut(s)	525, 2408
PctI	GAATGC	2 cut(s)	481, 1697
PdiI	GCCGGC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	1997, 2372
PflFI	GACNNNGTC	1 cut(s)	549
PflMI	CCANNNNNTGG	1 cut(s)	667
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	1 cut(s)	342
PscI	ACATGT	2 cut(s)	525, 2408
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	1668
PspGI	CCWGG	1 cut(s)	971
PspOMI	GGGCCC	1 cut(s)	1665
PspPI	GGNCC	5 cut(s)	342, 545, 551, 1665, 1666
PspPPI	RGGWCCY	1 cut(s)	342
PsrI	GAACNNNNNNTAC	2 cut(s)	2324, 2356
PstI	CTGCAG	2 cut(s)	775, 1543
PstNI	CAGNNNCTG	2 cut(s)	1727, 2105
PsuI	RGATCY	3 cut(s)	1601, 1655, 2299
PsyI	GACNNNGTC	1 cut(s)	549
PvuII	CAGCTG	4 cut(s)	64, 667, 1724, 2435
RseI	CAYNNNNRTG	4 cut(s)	1281, 1887, 1947, 2132
SalI	GTCGAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	2232
Sau96I	GGNCC	5 cut(s)	342, 545, 551, 1665, 1666
ScaI	AGTACT	6 cut(s)	397, 892, 2095, 2140, 2293, 2404
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	549, 973
SduI	GDGCHC	3 cut(s)	918, 1124, 1669
SfaNI	GCATC	5 cut(s)	865, 1217, 1256, 2018, 2323
SfcI	CTRYAG	4 cut(s)	771, 1539, 2097, 2295
SinI	GGWCC	3 cut(s)	342, 545, 551
SmiMI	CAYNNNNRTG	4 cut(s)	1281, 1887, 1947, 2132
SmlI	CTYRAG	2 cut(s)	30, 1716
SmoI	CTYRAG	2 cut(s)	30, 1716
SpeI	ACTAGT	3 cut(s)	392, 1973, 2396
SphI	GCATGC	1 cut(s)	1774
Sse9I	AATT	5 cut(s)	181, 1855, 1933, 2035, 2419
SspI	AATATT	3 cut(s)	598, 1115, 2230
SspMI	CTAG	5 cut(s)	393, 1086, 1337, 1974, 2397
StyD4I	CCNGG	2 cut(s)	547, 971
StyI	CCWWGG	5 cut(s)	94, 472, 1336, 2065, 2127
TaaI	ACNGT	5 cut(s)	122, 757, 962, 2143, 2467
TaiI	ACGT	2 cut(s)	623, 1515
TaqI	TCGA	1 cut(s)	362
TasI	AATT	5 cut(s)	181, 1855, 1933, 2035, 2419
TatI	WGTACW	7 cut(s)	395, 890, 1641, 2093, 2138, 2291, 2402
TauI	GCSGC	5 cut(s)	649, 794, 1085, 1531, 1757
TfiI	GAWTC	2 cut(s)	1997, 2372
Tru1I	TTAA	1 cut(s)	2232
Tru9I	TTAA	1 cut(s)	2232
TscAI	CASTG	7 cut(s)	142, 166, 199, 514, 849, 1498, 2388
TseFI	GTSAC	3 cut(s)	837, 847, 1264
Tsp45I	GTSAC	3 cut(s)	837, 847, 1264
TspGWI	ACGGA	1 cut(s)	1602
TspRI	CASTG	7 cut(s)	142, 166, 199, 514, 849, 1498, 2388
Tth111I	GACNNNGTC	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	3 cut(s)	342, 545, 551
XapI	RAATTY	1 cut(s)	2035
XceI	RCATGY	4 cut(s)	529, 1774, 1820, 2412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	1336
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	5 cut(s)	393, 1086, 1337, 1974, 2397
ZrmI	AGTACT	6 cut(s)	397, 892, 2095, 2140, 2293, 2404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.