Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003550.1

Orthogroup ID

OG0010675

Physical Location & Seq

Genomic Coordinates Reverse (-)

62976 .. 64337

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003550.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgaactggttgggtttctctctttcccctcaagaagatgatcatgctccaatatcacaccagctggctgaccaagagaccttagcctctcgccttggcttcaactccaatgaaatccacggtgccggtggtggcactgatgtctccggtggcggaagcagtgagtgctttgatgttactaattctgactccactgcttctgtcaatcaccacctcactccatctatttttggcatacatgaagctgcagctttcagcaggaacaatgatcatatccattcccaagattggaatatgaagggtgctggtatgaactcatcagatagcaataactacaaaaggacctcatcttcagacctgtcgactatgctaatgggaagcaataccagtactactagtacttcatacagcattatcagccagcaggcgaaccttgaaaaccatcatcaacaactaccaaagcttgaaaacttccttggccggcattcttttgcggatcatgacagcagcagtgctggtcatgattacatgtttgatatgaataatggacccggtccagttagcagtaatgttatgaatactaaaactaatagtaacaatattgggttgtccatgatcaagacgtggctgagaaatcaaccttctcagccgcgcgataaccaccatcagctggagcaggagagcaagaatagtaaggagagcagaaatcaaccacagagtagtctatcgctctcaatgggtactggatcgcttcaaacagttactactgcaactgcaggtggtgctgctactggagaaactactagttcatcagataaaaatactaaacagtcaccagtggtgacagccacaacaacaacggggactgatgcccaaactcagagtactggtggtgctattgaggccgttcccagaaaggccattgatacatttggccaaaggacatctatataccgtggtgtaaccaggttgattaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

326

Amino Acids

34.84

Weight (kDa)

5.88

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17430 AT5G17430
fragaria_vesca	FvH4_6g00160 FvH4_6g00160
malus_domestica	MD04G1247700.v1.1
prunus_persica	Prupe.6G364100_v2.0.a1
pyrus_communis	pycom12g24110
rosa_chinensis	RchiOBHm_Chr3g0447531
rosa_laevigata	RLG00000025991
rosa_multiflora	Rmu_co8415981.1_g000001 Rmu_sc0003550.1_g000011 Rmu_sc0006572.1_g000001 Rmu_sc0037294.1_g000005
rosa_roxburghii	Rroxscaffold_6G00425750
rosa_rugosa	Rorug02G0602600
rosa_samantha	Rh3AG002900 Rh3BG002400 Rh3CG002700 Rh3DG002800
rosa_wichuraiana	Rw3G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	767
Acc36I	ACCTGC	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	2 cut(s)	652, 654
AciI	CCGC	3 cut(s)	153, 494, 650
AclWI	GGATC	2 cut(s)	504, 754
AcoI	YGGCCR	2 cut(s)	478, 934
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	4 cut(s)	391, 400, 742, 886
AfiI	CCNNNNNNNGG	2 cut(s)	288, 670
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	4 cut(s)	103, 437, 467, 755
AhlI	ACTAGT	2 cut(s)	395, 803
AjiI	CACGTC	1 cut(s)	624
AjnI	CCWGG	1 cut(s)	965
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	5 cut(s)	64, 245, 251, 463, 670
AluI	AGCT	5 cut(s)	64, 245, 251, 463, 670
Alw26I	GTCTC	2 cut(s)	71, 148
AlwI	GGATC	2 cut(s)	504, 754
AoxI	GGCC	4 cut(s)	478, 903, 918, 934
ApeKI	GCWGC	4 cut(s)	245, 248, 507, 785
AseI	ATTAAT	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	3 cut(s)	342, 548, 554
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	200, 825, 853
AvaII	GGWCC	3 cut(s)	342, 548, 554
BalI	TGGCCA	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	232, 260, 519, 772
BccI	CCATC	3 cut(s)	229, 450, 672
BceAI	ACGGC	1 cut(s)	890
BciT130I	CCWGG	1 cut(s)	967
BclI	TGATCA	3 cut(s)	40, 268, 615
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	71, 148
BcuI	ACTAGT	2 cut(s)	395, 803
BfaI	CTAG	2 cut(s)	396, 804
BfmI	CTRYAG	2 cut(s)	246, 774
BfuAI	ACCTGC	1 cut(s)	767
BisI	GCNGC	5 cut(s)	246, 249, 508, 650, 786
BlsI	GCNGC	5 cut(s)	247, 250, 509, 651, 787
BmcAI	AGTACT	3 cut(s)	391, 400, 886
Bme1390I	CCNGG	2 cut(s)	552, 967
Bme18I	GGWCC	3 cut(s)	342, 548, 554
BmgBI	CACGTC	1 cut(s)	624
BmgT120I	GGNCC	3 cut(s)	342, 548, 554
BmiI	GGNNCC	2 cut(s)	124, 550
BmrFI	CCNGG	2 cut(s)	552, 967
BmsI	GCATC	1 cut(s)	859
BpmI	CTGGAG	2 cut(s)	692, 813
Bpu10I	CCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	94, 118, 475, 955
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 670
Bse118I	RCCGGY	2 cut(s)	125, 480
Bse1I	ACTGG	7 cut(s)	11, 387, 557, 748, 796, 836, 892
BseBI	CCWGG	1 cut(s)	967
BseDI	CCNNGG	4 cut(s)	94, 118, 475, 955
BseLI	CCNNNNNNNGG	2 cut(s)	288, 670
BseMII	CTCAG	3 cut(s)	620, 659, 893
BseNI	ACTGG	7 cut(s)	11, 387, 557, 748, 796, 836, 892
BseXI	GCAGC	4 cut(s)	232, 260, 519, 772
Bsh1236I	CGCG	2 cut(s)	652, 654
BshFI	GGCC	4 cut(s)	480, 905, 920, 936
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	126, 147, 481, 552
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	2 cut(s)	288, 670
BsmAI	GTCTC	2 cut(s)	71, 148
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	4 cut(s)	480, 905, 920, 936
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	40, 268, 496, 615, 746
BspACI	CCGC	3 cut(s)	153, 494, 650
BspANI	GGCC	4 cut(s)	480, 905, 920, 936
BspCNI	CTCAG	3 cut(s)	621, 658, 892
BspFNI	CGCG	2 cut(s)	652, 654
BspHI	TCATGA	2 cut(s)	499, 520
BspLI	GGNNCC	2 cut(s)	124, 550
BspMAI	CTGCAG	2 cut(s)	250, 778
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	2 cut(s)	504, 754
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	2 cut(s)	125, 480
BsrI	ACTGG	7 cut(s)	11, 387, 557, 748, 796, 836, 892
BssAI	RCCGGY	2 cut(s)	125, 480
BssECI	CCNNGG	4 cut(s)	94, 118, 475, 955
BssMI	GATC	5 cut(s)	40, 268, 496, 615, 746
BssT1I	CCWWGG	2 cut(s)	94, 475
Bst2UI	CCWGG	1 cut(s)	967
Bst4CI	ACNGT	4 cut(s)	122, 760, 831, 956
BstAPI	GCANNNNNTGC	2 cut(s)	165, 782
BstC8I	GCNNGC	4 cut(s)	66, 422, 426, 482
BstDEI	CTNAG	4 cut(s)	82, 629, 645, 879
BstDSI	CCRYGG	2 cut(s)	118, 955
BstFNI	CGCG	2 cut(s)	652, 654
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	5 cut(s)	43, 271, 499, 618, 749
BstMAI	GTCTC	2 cut(s)	71, 148
BstMBI	GATC	5 cut(s)	40, 268, 496, 615, 746
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 417, 782, 902
BstNI	CCWGG	1 cut(s)	967
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	550, 965
BstSFI	CTRYAG	2 cut(s)	246, 774
BstUI	CGCG	2 cut(s)	652, 654
BstV1I	GCAGC	4 cut(s)	232, 260, 519, 772
BsuRI	GGCC	4 cut(s)	480, 905, 920, 936
BtgI	CCRYGG	2 cut(s)	118, 955
BtrI	CACGTC	1 cut(s)	624
BtsI	GCAGTG	3 cut(s)	166, 192, 517
BtsIMutI	CAGTG	5 cut(s)	135, 166, 192, 517, 843
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	4 cut(s)	66, 422, 426, 482
CciI	TCATGA	2 cut(s)	499, 520
CfoI	GCGC	1 cut(s)	654
Cfr10I	RCCGGY	2 cut(s)	125, 480
Cfr13I	GGNCC	3 cut(s)	342, 548, 554
CsiI	ACCWGGT	1 cut(s)	965
Csp6I	GTAC	4 cut(s)	390, 399, 741, 885
CviAII	CATG	6 cut(s)	44, 239, 500, 521, 529, 613
CviQI	GTAC	4 cut(s)	390, 399, 741, 885
DdeI	CTNAG	4 cut(s)	82, 629, 645, 879
DpnI	GATC	5 cut(s)	42, 270, 498, 617, 748
DpnII	GATC	5 cut(s)	40, 268, 496, 615, 746
EaeI	YGGCCR	2 cut(s)	478, 934
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	94, 475
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	342, 548, 554
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	965
EcoT14I	CCWWGG	2 cut(s)	94, 475
ErhI	CCWWGG	2 cut(s)	94, 475
FaeI	CATG	6 cut(s)	47, 242, 503, 524, 532, 616
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	6 cut(s)	43, 238, 499, 520, 528, 612
FbaI	TGATCA	3 cut(s)	40, 268, 615
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	5 cut(s)	246, 249, 508, 650, 786
Fsp4HI	GCNGC	5 cut(s)	246, 249, 508, 650, 786
FspBI	CTAG	2 cut(s)	396, 804
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	5 cut(s)	246, 249, 508, 650, 786
GsuI	CTGGAG	2 cut(s)	692, 813
HaeIII	GGCC	4 cut(s)	480, 905, 920, 936
HapII	CCGG	4 cut(s)	126, 147, 481, 552
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	6 cut(s)	47, 242, 503, 524, 532, 616
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	4 cut(s)	126, 147, 481, 552
HphI	GGTGA	3 cut(s)	200, 825, 853
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	5 cut(s)	187, 322, 355, 814, 882
Hpy188III	TCNNGA	4 cut(s)	32, 500, 521, 619
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	292, 651
HpyCH4III	ACNGT	4 cut(s)	122, 760, 831, 956
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	3 cut(s)	248, 770, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 417, 782, 902
HpyF3I	CTNAG	4 cut(s)	82, 629, 645, 879
HpySE526I	ACGT	1 cut(s)	623
Hsp92II	CATG	6 cut(s)	47, 242, 503, 524, 532, 616
HspAI	GCGC	1 cut(s)	652
KroI	GCCGGC	1 cut(s)	480
KroNI	GCCGGC	1 cut(s)	482
Ksp22I	TGATCA	3 cut(s)	40, 268, 615
Kzo9I	GATC	5 cut(s)	40, 268, 496, 615, 746
LmnI	GCTCC	2 cut(s)	52, 673
Lsp1109I	GCAGC	4 cut(s)	232, 260, 519, 772
LweI	GCATC	1 cut(s)	859
MabI	ACCWGGT	1 cut(s)	965
MaeI	CTAG	2 cut(s)	396, 804
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	6 cut(s)	175, 593, 760, 831, 841, 961
MalI	GATC	5 cut(s)	42, 270, 498, 617, 748
MboI	GATC	5 cut(s)	40, 268, 496, 615, 746
MboII	GAAGA	2 cut(s)	47, 342
MlsI	TGGCCA	1 cut(s)	936
MluCI	AATT	2 cut(s)	181, 976
MluNI	TGGCCA	1 cut(s)	936
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	39, 97, 224, 355, 895
Mox20I	TGGCCA	1 cut(s)	936
MroNI	GCCGGC	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	1 cut(s)	975
Msp20I	TGGCCA	1 cut(s)	936
MspA1I	CMGCKG	2 cut(s)	64, 670
MspI	CCGG	4 cut(s)	126, 147, 481, 552
MspR9I	CCNGG	2 cut(s)	552, 967
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	967
MvnI	CGCG	2 cut(s)	652, 654
MwoI	GCNNNNNNNGC	4 cut(s)	165, 417, 782, 902
NaeI	GCCGGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	5 cut(s)	40, 268, 496, 615, 746
NgoMIV	GCCGGC	1 cut(s)	480
NlaIII	CATG	6 cut(s)	47, 242, 503, 524, 532, 616
NlaIV	GGNNCC	2 cut(s)	124, 550
NmuCI	GTSAC	2 cut(s)	831, 841
NspI	RCATGY	1 cut(s)	532
PagI	TCATGA	2 cut(s)	499, 520
PaqCI	CACCTGC	1 cut(s)	767
PciI	ACATGT	1 cut(s)	528
PctI	GAATGC	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	482
PflFI	GACNNNGTC	1 cut(s)	552
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	5 cut(s)	247, 250, 509, 651, 787
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	1 cut(s)	342
PscI	ACATGT	1 cut(s)	528
PshBI	ATTAAT	1 cut(s)	975
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	965
PspGI	CCWGG	1 cut(s)	965
PspN4I	GGNNCC	2 cut(s)	124, 550
PspPI	GGNCC	3 cut(s)	342, 548, 554
PspPPI	RGGWCCY	1 cut(s)	342
PstI	CTGCAG	2 cut(s)	250, 778
PsyI	GACNNNGTC	1 cut(s)	552
PvuII	CAGCTG	2 cut(s)	64, 670
RsaI	GTAC	4 cut(s)	391, 400, 742, 886
RsaNI	GTAC	4 cut(s)	390, 399, 741, 885
SalI	GTCGAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	5 cut(s)	246, 249, 508, 650, 786
Sau3AI	GATC	5 cut(s)	40, 268, 496, 615, 746
Sau96I	GGNCC	3 cut(s)	342, 548, 554
ScaI	AGTACT	3 cut(s)	391, 400, 886
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	552, 967
SexAI	ACCWGGT	1 cut(s)	965
SfaNI	GCATC	1 cut(s)	859
SfcI	CTRYAG	2 cut(s)	246, 774
SinI	GGWCC	3 cut(s)	342, 548, 554
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
SpeI	ACTAGT	2 cut(s)	395, 803
Sse9I	AATT	2 cut(s)	181, 976
SsiI	CCGC	3 cut(s)	153, 494, 650
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	396, 804
StyD4I	CCNGG	2 cut(s)	550, 965
StyI	CCWWGG	2 cut(s)	94, 475
TaaI	ACNGT	4 cut(s)	122, 760, 831, 956
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	1 cut(s)	362
TasI	AATT	2 cut(s)	181, 976
TatI	WGTACW	3 cut(s)	389, 398, 884
TauI	GCSGC	1 cut(s)	652
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	5 cut(s)	142, 166, 199, 517, 843
TseFI	GTSAC	2 cut(s)	831, 841
TseI	GCWGC	4 cut(s)	245, 248, 507, 785
Tsp45I	GTSAC	2 cut(s)	831, 841
TspDTI	ATGAA	9 cut(s)	17, 126, 255, 311, 326, 393, 554, 590, 798
TspRI	CASTG	5 cut(s)	142, 166, 199, 517, 843
Tth111I	GACNNNGTC	1 cut(s)	552
Van91I	CCANNNNNTGG	1 cut(s)	670
VpaK11BI	GGWCC	3 cut(s)	342, 548, 554
VspI	ATTAAT	1 cut(s)	975
XceI	RCATGY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	2 cut(s)	396, 804
ZrmI	AGTACT	3 cut(s)	391, 400, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.