Rmu_co8426429.1_g000001

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8426429.1
OG0018953
Physical Location & Seq
Reverse (-)
938 .. 1455
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8426429.1_g000001.1.cds

Sequence Viewer

Length: 401 bp
tttggcaacccagttctggaacaaagggatacaagttgaagtatgggtctagagtgcaggtggtgttacaagacacaagtattgtcacacccgagaaccatcccattcatctccacggatatgatttctacatccttgcagagggttttggaaacttcaatgccaagactgatactagaaagtttaaccttgttgatccacctctgaggaacactgtgtcggtgcccgcaaatggttgggcagtcatcagatttgtagctgacaatccaggtgcttgggtgatgcactgtcacttggatgttcatatcaacttgggtctggccatggttttcttggtggacaatggagttggggagctgcaaacaatagaacctccgcctgcagatttgcctctgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0042221 GO:0046688 GO:0050896 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

132

Amino Acids

14.59

Weight (kDa)

6.03

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018953)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0341981 RchiOBHm_Chr1g0342181
rosa_laevigata RLG00000029135
rosa_multiflora Rmu_co8426429.1_g000001 Rmu_sc0002161.1_g000002
rosa_samantha Rh1AG170300 Rh1BG135100 Rh1CG155300 Rh1CG158500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 222
AciI CCGC 2 cut(s) 227, 376
AclWI GGATC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 320
AfiI CCNNNNNNNGG 3 cut(s) 16, 141, 232
AgsI TTSAA 2 cut(s) 39, 159
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 259, 357
AluI AGCT 2 cut(s) 259, 357
AlwI GGATC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 322
BanI GGYRCC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 344
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 269
BciVI GTATCC 1 cut(s) 22
BfaI CTAG 2 cut(s) 50, 176
BfmI CTRYAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 48
BfuI GTATCC 1 cut(s) 22
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 1 cut(s) 272
BmuI ACTGGG 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 114, 323
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 141, 232
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 114, 323
BseGI GGATG 3 cut(s) 99, 131, 303
BseLI CCNNNNNNNGG 3 cut(s) 16, 141, 232
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 76
BshFI GGCC 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 16, 141, 232
BsnI GGCC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 195
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 2 cut(s) 227, 376
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 224
BspMAI CTGCAG 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 48
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 114, 323
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 216, 289
BstC8I GCNNGC 2 cut(s) 227, 380
BstDEI CTNAG 1 cut(s) 205
BstDSI CCRYGG 2 cut(s) 114, 323
BstENI CCTNNNNNAGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 99, 131, 303
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 275
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 322
BtgI CCRYGG 2 cut(s) 114, 323
BtsCI GGATG 3 cut(s) 99, 131, 303
BtsIMutI CAGTG 2 cut(s) 212, 285
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 227, 380
CviAII CATG 1 cut(s) 324
CviJI RGCY 3 cut(s) 259, 322, 357
CviKI_1 RGCY 3 cut(s) 259, 322, 357
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 320
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 1 cut(s) 327
FaiI YATR 4 cut(s) 44, 122, 305, 325
FatI CATG 1 cut(s) 323
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 3 cut(s) 86, 118, 310
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 2 cut(s) 50, 176
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 1 cut(s) 322
Hin1II CATG 1 cut(s) 327
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 2 cut(s) 206, 250
Hpy188III TCNNGA 2 cut(s) 17, 50
Hpy8I GTNNAC 1 cut(s) 339
HpyCH4III ACNGT 2 cut(s) 216, 289
HpyCH4V TGCA 5 cut(s) 57, 139, 285, 360, 382
HpyF3I CTNAG 1 cut(s) 205
Hsp92II CATG 1 cut(s) 327
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 7 cut(s) 2, 24, 43, 254, 281, 304, 392
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 272
MaeI CTAG 2 cut(s) 50, 176
MaeIII GTNAC 3 cut(s) 65, 84, 289
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 322
MluNI TGGCCA 1 cut(s) 322
MnlI CCTC 5 cut(s) 135, 200, 212, 383, 401
Mox20I TGGCCA 1 cut(s) 322
MscI TGGCCA 1 cut(s) 322
MseI TTAA 2 cut(s) 185, 399
MslI CAYNNNNRTG 2 cut(s) 119, 296
Msp20I TGGCCA 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 323
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 2 cut(s) 84, 289
PaqCI CACCTGC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 384
RseI CAYNNNNRTG 2 cut(s) 119, 296
SaqAI TTAA 2 cut(s) 185, 399
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 227
SetI ASST 7 cut(s) 62, 191, 204, 261, 273, 359, 375
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 119, 296
SsiI CCGC 2 cut(s) 227, 376
SspMI CTAG 2 cut(s) 50, 176
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 216, 289
Tru1I TTAA 2 cut(s) 185, 399
Tru9I TTAA 2 cut(s) 185, 399
TscAI CASTG 2 cut(s) 219, 292
TseFI GTSAC 2 cut(s) 84, 289
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 2 cut(s) 84, 289
TspDTI ATGAA 2 cut(s) 97, 292
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 219, 292
XagI CCTNNNNNAGG 1 cut(s) 139
XbaI TCTAGA 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 2 cut(s) 50, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.