Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018953

Physical Location & Seq

Genomic Coordinates Forward (+)

35096217 .. 35097320

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG158500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCCTCCTACGTACACCAAGCCTTTCACCACCAAAGTTCTAATGCTAGGACCCGGCCAGACCACCGATGTTTTAATCACCGGGGACCAGCCACCATCTCGATACTACTTGGCGGCACGTGCCTATTTCAGTGCACAAAACGCGCCATTTGACAACACCACCACCACAGCCATTCTTGAATACAAGTCCGTCCGTTGCAACACTACTAGTTGCAAAAAGGGTAAAACAGTAATTAAACCCATAATGCCAAAGCTGCCAGCTTTCAATGACACAAGCACTGCATCTGCCTTCACTAAGAGCTTCAGAAGCCCTAGAAAAGTCGAAGTCCCAACTGAAATCGACGAGAACCTCTTCTTCACAATCGGTCTCGGACTCAACAAATGCCCTAAGCACTTTCAATCTAGAAGGTGCCAAGGCCCCAATGGCACACGCTTCACTGCTAGCATGAACAATGTCTCATTTGTGCTTCCAAACAACATGTCAATTCTCCAAGCTTACCAGCAAAACATTCCTGGAGTTTACACTAGTGATTTTCCAGCCAACCCGCCACGGAAATTTGATTACACTGGGAATGTCAGCCGCTCGCTTTGGCAACCCAGTTCTGGAACAAAGGGATACAAGTTGAAGTATGGGTCTAGAGTGCAGGTGGTGTTACAAGACACAAGTATTGTCACACCCGAGAACCATCCCATTCATCTCCACGGATATGATTTCTACATCCTTGCAGAGGGTTTTGGAAACTTCAATGCCAAGACTGATACTAGAAAGTTTAACCTTGTTGATCCACCTCTGAGGAACACTGTGTCGGTGCCCGCAAATGGTTGGGCAGTCATCAGATTTGTAGCTGACAATCCAGGTGCTTGGGTGATGCACTGTCACTTGGATGTTCATATCAACTTGGGTCTGGCCATGGTTTTCTTGGTGGACAATGGAGTTGGGGAGCTGCAAACAATAGAACCTCCGCCTGCAGATTTGCCTCTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0042221 GO:0046688 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

328

Amino Acids

36.34

Weight (kDa)

9.22

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	4 - 62	3.6e-13	Multicopper oxidase
Cu-oxidase_2	PF07731	177 - 310	2.5e-42	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018953)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0341981 RchiOBHm_Chr1g0342181
rosa_laevigata	RLG00000029135
rosa_multiflora	Rmu_co8426429.1_g000001 Rmu_sc0002161.1_g000002
rosa_samantha	Rh1AG170300 Rh1BG135100 Rh1CG155300 Rh1CG158500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	2 cut(s)	408, 808
AccBSI	CCGCTC	1 cut(s)	582
AccII	CGCG	1 cut(s)	143
AciI	CCGC	5 cut(s)	113, 545, 580, 813, 962
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	2 cut(s)	55, 906
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	286
AcvI	CACGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	602, 727, 818
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	179, 265, 398, 625, 745
AhlI	ACTAGT	2 cut(s)	206, 524
AjnI	CCWGG	2 cut(s)	511, 853
AluBI	AGCT	6 cut(s)	253, 260, 300, 494, 845, 943
AluI	AGCT	6 cut(s)	253, 260, 300, 494, 845, 943
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	371, 460
Alw44I	GTGCAC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	776
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	3 cut(s)	55, 415, 906
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	253, 943
ApoI	RAATTY	1 cut(s)	554
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	50, 85, 416
AsuC2I	CCSGG	2 cut(s)	54, 82
AsuHPI	GGTGA	3 cut(s)	19, 70, 877
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	50, 85
BaeGI	GKGCMC	2 cut(s)	136, 813
BalI	TGGCCA	1 cut(s)	908
BanI	GGYRCC	2 cut(s)	408, 808
BbrPI	CACGTG	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	240, 930
BccI	CCATC	2 cut(s)	103, 693
BciT130I	CCWGG	2 cut(s)	513, 855
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	2 cut(s)	54, 82
BcoDI	GTCTC	2 cut(s)	371, 460
BcuI	ACTAGT	2 cut(s)	206, 524
BfaI	CTAG	8 cut(s)	47, 207, 312, 402, 441, 525, 636, 762
BfmI	CTRYAG	1 cut(s)	966
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	423
BisI	GCNGC	4 cut(s)	114, 254, 580, 944
BlsI	GCNGC	4 cut(s)	115, 255, 581, 945
Bme1390I	CCNGG	4 cut(s)	54, 82, 513, 855
Bme18I	GGWCC	2 cut(s)	50, 85
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	3 cut(s)	50, 85, 416
BmiI	GGNNCC	5 cut(s)	52, 86, 410, 418, 810
BmrFI	CCNGG	4 cut(s)	54, 82, 513, 855
BmrI	ACTGGG	2 cut(s)	576, 591
BmsI	GCATC	2 cut(s)	290, 858
BmtI	GCTAGC	1 cut(s)	444
BmuI	ACTGGG	2 cut(s)	576, 591
BpmI	CTGGAG	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	387
BpuMI	CCSGG	2 cut(s)	54, 82
BsaAI	YACGTR	2 cut(s)	12, 119
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	5 cut(s)	81, 412, 548, 700, 909
Bsc4I	CCNNNNNNNGG	3 cut(s)	602, 727, 818
Bse1I	ACTGG	2 cut(s)	571, 597
BseBI	CCWGG	2 cut(s)	513, 855
BseDI	CCNNGG	5 cut(s)	81, 412, 548, 700, 909
BseGI	GGATG	3 cut(s)	685, 717, 889
BseLI	CCNNNNNNNGG	3 cut(s)	602, 727, 818
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	2 cut(s)	571, 597
BseSI	GKGCMC	2 cut(s)	136, 813
BseXI	GCAGC	2 cut(s)	240, 930
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	57, 417, 908
BshNI	GGYRCC	2 cut(s)	408, 808
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	2 cut(s)	54, 81
BslFI	GGGAC	2 cut(s)	98, 311
BslI	CCNNNNNNNGG	3 cut(s)	602, 727, 818
BsmAI	GTCTC	2 cut(s)	371, 460
BsmFI	GGGAC	2 cut(s)	98, 311
BsnI	GGCC	3 cut(s)	57, 417, 908
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	136, 813
Bsp143I	GATC	1 cut(s)	781
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	5 cut(s)	113, 545, 580, 813, 962
BspANI	GGCC	3 cut(s)	57, 417, 908
BspCNI	CTCAG	1 cut(s)	783
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	5 cut(s)	52, 86, 410, 418, 810
BspMAI	CTGCAG	1 cut(s)	970
BspMI	ACCTGC	1 cut(s)	634
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	776
BspT107I	GGYRCC	2 cut(s)	408, 808
BspTNI	GGTCTC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	571, 597
BssECI	CCNNGG	5 cut(s)	81, 412, 548, 700, 909
BssMI	GATC	1 cut(s)	781
BssT1I	CCWWGG	2 cut(s)	412, 909
Bst2UI	CCWGG	2 cut(s)	513, 855
Bst4CI	ACNGT	3 cut(s)	229, 802, 875
Bst6I	CTCTTC	1 cut(s)	356
BstBAI	YACGTR	2 cut(s)	12, 119
BstC8I	GCNNGC	5 cut(s)	258, 442, 584, 813, 966
BstDEI	CTNAG	3 cut(s)	294, 387, 791
BstDSI	CCRYGG	3 cut(s)	548, 700, 909
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	3 cut(s)	685, 717, 889
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	784
BstMAI	GTCTC	2 cut(s)	371, 460
BstMBI	GATC	1 cut(s)	781
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 140, 253, 306, 423
BstNI	CCWGG	2 cut(s)	513, 855
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	4 cut(s)	52, 80, 511, 853
BstSFI	CTRYAG	1 cut(s)	966
BstSLI	GKGCMC	2 cut(s)	136, 813
BstSNI	TACGTA	1 cut(s)	12
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	240, 930
BstXI	CCANNNNNNTGG	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	3 cut(s)	57, 417, 908
BtgI	CCRYGG	3 cut(s)	548, 700, 909
BtsCI	GGATG	3 cut(s)	685, 717, 889
BtsI	GCAGTG	2 cut(s)	276, 435
BtsIMutI	CAGTG	6 cut(s)	136, 276, 435, 564, 798, 871
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	5 cut(s)	258, 442, 584, 813, 966
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	50, 85, 416
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	3 cut(s)	445, 478, 910
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	294, 387, 791
DpnI	GATC	1 cut(s)	783
DpnII	GATC	1 cut(s)	781
EaeI	YGGCCR	2 cut(s)	55, 906
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	1 cut(s)	951
Eco105I	TACGTA	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	412, 909
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	50, 85
Eco57I	CTGAAG	1 cut(s)	286
Eco72I	CACGTG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoO109I	RGGNCCY	2 cut(s)	50, 416
EcoRII	CCWGG	2 cut(s)	511, 853
EcoT14I	CCWWGG	2 cut(s)	412, 909
ErhI	CCWWGG	2 cut(s)	412, 909
FaeI	CATG	3 cut(s)	448, 481, 913
FaiI	YATR	7 cut(s)	242, 446, 479, 630, 708, 891, 911
FaqI	GGGAC	2 cut(s)	98, 311
FatI	CATG	3 cut(s)	444, 477, 909
FauI	CCCGC	2 cut(s)	552, 820
Fnu4HI	GCNGC	4 cut(s)	114, 254, 580, 944
FokI	GGATG	3 cut(s)	672, 704, 896
Fsp4HI	GCNGC	4 cut(s)	114, 254, 580, 944
FspBI	CTAG	8 cut(s)	47, 207, 312, 402, 441, 525, 636, 762
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	4 cut(s)	114, 254, 580, 944
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	57, 417, 908
HapII	CCGG	2 cut(s)	54, 81
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	448, 481, 913
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	54, 81
HphI	GGTGA	3 cut(s)	19, 70, 877
Hpy166II	GTNNAC	4 cut(s)	15, 134, 520, 925
Hpy188I	TCNGA	4 cut(s)	305, 371, 792, 836
Hpy188III	TCNNGA	5 cut(s)	99, 176, 402, 603, 636
Hpy8I	GTNNAC	4 cut(s)	15, 134, 520, 925
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	298, 399
HpyCH4III	ACNGT	3 cut(s)	229, 802, 875
HpyCH4IV	ACGT	2 cut(s)	11, 118
HpyCH4V	TGCA	9 cut(s)	134, 198, 213, 281, 643, 725, 871, 946, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 140, 253, 306, 423
HpyF3I	CTNAG	3 cut(s)	294, 387, 791
HpySE526I	ACGT	2 cut(s)	11, 118
Hsp92II	CATG	3 cut(s)	448, 481, 913
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	781
LmnI	GCTCC	1 cut(s)	940
Lsp1109I	GCAGC	2 cut(s)	240, 930
LweI	GCATC	2 cut(s)	290, 858
MaeI	CTAG	8 cut(s)	47, 207, 312, 402, 441, 525, 636, 762
MaeII	ACGT	2 cut(s)	11, 118
MaeIII	GTNAC	3 cut(s)	651, 670, 875
MalI	GATC	1 cut(s)	783
MbiI	CCGCTC	1 cut(s)	582
MboI	GATC	1 cut(s)	781
MboII	GAAGA	2 cut(s)	343, 346
MhlI	GDGCHC	2 cut(s)	136, 813
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	3 cut(s)	231, 483, 554
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	1 cut(s)	366
MnlI	CCTC	7 cut(s)	15, 359, 721, 786, 798, 969, 987
Mox20I	TGGCCA	1 cut(s)	908
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	4 cut(s)	74, 234, 771, 985
MslI	CAYNNNNRTG	2 cut(s)	705, 882
Msp20I	TGGCCA	1 cut(s)	908
MspI	CCGG	2 cut(s)	54, 81
MspR9I	CCNGG	4 cut(s)	54, 82, 513, 855
MvaI	CCWGG	2 cut(s)	513, 855
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	5 cut(s)	119, 140, 253, 306, 423
NciI	CCSGG	2 cut(s)	54, 82
NcoI	CCATGG	1 cut(s)	909
NdeII	GATC	1 cut(s)	781
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	3 cut(s)	448, 481, 913
NlaIV	GGNNCC	5 cut(s)	52, 86, 410, 418, 810
NmuCI	GTSAC	2 cut(s)	670, 875
NspI	RCATGY	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	634
PciI	ACATGT	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	4 cut(s)	115, 255, 581, 945
PleI	GAGTC	1 cut(s)	366
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	366
Ppu21I	YACGTR	2 cut(s)	12, 119
PpuMI	RGGWCCY	1 cut(s)	50
PscI	ACATGT	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	511, 853
PspCI	CACGTG	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	511, 853
PspN4I	GGNNCC	5 cut(s)	52, 86, 410, 418, 810
PspPI	GGNCC	3 cut(s)	50, 85, 416
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	970
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	2 cut(s)	705, 882
SaqAI	TTAA	4 cut(s)	74, 234, 771, 985
SatI	GCNGC	4 cut(s)	114, 254, 580, 944
Sau3AI	GATC	1 cut(s)	781
Sau96I	GGNCC	3 cut(s)	50, 85, 416
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	4 cut(s)	54, 82, 513, 855
SduI	GDGCHC	2 cut(s)	136, 813
SfaNI	GCATC	2 cut(s)	290, 858
SfcI	CTRYAG	1 cut(s)	966
SinI	GGWCC	2 cut(s)	50, 85
SmiMI	CAYNNNNRTG	2 cut(s)	705, 882
SnaBI	TACGTA	1 cut(s)	12
SpeI	ACTAGT	2 cut(s)	206, 524
Sse9I	AATT	3 cut(s)	231, 483, 554
SsiI	CCGC	5 cut(s)	113, 545, 580, 813, 962
SspMI	CTAG	8 cut(s)	47, 207, 312, 402, 441, 525, 636, 762
StyD4I	CCNGG	4 cut(s)	52, 80, 511, 853
StyI	CCWWGG	2 cut(s)	412, 909
TaaI	ACNGT	3 cut(s)	229, 802, 875
TaiI	ACGT	2 cut(s)	14, 121
TaqI	TCGA	3 cut(s)	100, 321, 339
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	231, 483, 554
TauI	GCSGC	2 cut(s)	116, 582
Tru1I	TTAA	4 cut(s)	74, 234, 771, 985
Tru9I	TTAA	4 cut(s)	74, 234, 771, 985
TscAI	CASTG	6 cut(s)	136, 283, 442, 571, 805, 878
TseFI	GTSAC	2 cut(s)	670, 875
TseI	GCWGC	2 cut(s)	253, 943
Tsp45I	GTSAC	2 cut(s)	670, 875
TspDTI	ATGAA	3 cut(s)	461, 683, 878
TspGWI	ACGGA	4 cut(s)	178, 182, 565, 717
TspRI	CASTG	6 cut(s)	136, 283, 442, 571, 805, 878
VneI	GTGCAC	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	50, 85
XagI	CCTNNNNNAGG	1 cut(s)	725
XapI	RAATTY	1 cut(s)	554
XbaI	TCTAGA	2 cut(s)	401, 635
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	2 cut(s)	419, 916
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	8 cut(s)	47, 207, 312, 402, 441, 525, 636, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.