Rmu_co8427111.1_g000001
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8427111.1
OG0015786
Physical Location & Seq
Reverse (-)
1 .. 1461
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8427111.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
gcatacatatgttcacgtttctatcgggctccagaactaatatttggtgccacggattatacaacttcaattgatatctggtcagctggctgtgtcctagcagagcttcttttggggcagcctttgtttcctggggaaaatgcagtggaccaacttgtagagatcatcaaggttctgggaacaccaacacgtgaagaaattcgctgtatgaatccaaattatacagatttcaggtttccacagataaaagcacacccttggcacaaggttttccacaagcgcatgcctccagaagcaattgatctggcttcaagactgctacaatactctccaagtcttcgttgcacagctctagaagcatgtgcacatcctttctttgacgaactccgtgagtccaatgcccgcctaccaaatggtcgcccattgcctccgctttttaattttaagcaagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase

Protein Analysis

151

Amino Acids

17.28

Weight (kDa)

6.49

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18710
fragaria_vesca FvH4_3g07480
rosa_chinensis RchiOBHm_Chr5g0011371
rosa_laevigata RLG00000031827
rosa_multiflora Rmu_co8427111.1_g000001 Rmu_sc0009975.1_g000011
rosa_roxburghii Rroxscaffold_1G00065080
rosa_rugosa Rorug04G0456500 Rorug04G0456600 Rorug04G0456600
rosa_samantha Rh5AG088300 Rh5BG083300 Rh5CG096600 Rh5DG083200
rosa_wichuraiana Rw5G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 2 cut(s) 403, 431
AcsI RAATTY 1 cut(s) 198
AcvI CACGTG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 69, 312
AjnI CCWGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 86, 106, 350
AluI AGCT 3 cut(s) 86, 106, 350
Alw21I GWGCWC 1 cut(s) 367
Alw44I GTGCAC 1 cut(s) 363
ApaLI GTGCAC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 132
BfaI CTAG 2 cut(s) 98, 353
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 30, 49
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 2 cut(s) 15, 273
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 51, 131, 257
Bse3DI GCAATG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 51, 131, 257
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 31, 367
Bsp143I GATC 2 cut(s) 162, 301
BspACI CCGC 2 cut(s) 403, 431
BspLI GGNNCC 2 cut(s) 30, 49
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 51, 131, 257
BssMI GATC 2 cut(s) 162, 301
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 88, 284, 403
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 367
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 2 cut(s) 165, 304
BstMBI GATC 2 cut(s) 162, 301
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 286, 363
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 329
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 88, 284, 403
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 148
CviAII CATG 2 cut(s) 283, 360
CviJI RGCY 7 cut(s) 29, 86, 90, 106, 121, 308, 350
CviKI_1 RGCY 7 cut(s) 29, 86, 90, 106, 121, 308, 350
DpnI GATC 2 cut(s) 164, 303
DpnII GATC 2 cut(s) 162, 301
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 2 cut(s) 286, 363
FaiI YATR 8 cut(s) 4, 8, 10, 60, 209, 222, 284, 361
FatI CATG 2 cut(s) 282, 359
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 354
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 2 cut(s) 98, 353
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 2 cut(s) 15, 273
HhaI GCGC 1 cut(s) 282
Hin1II CATG 2 cut(s) 286, 363
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 211, 392
Hpy166II GTNNAC 3 cut(s) 14, 148, 365
Hpy188III TCNNGA 4 cut(s) 32, 290, 312, 353
Hpy8I GTNNAC 3 cut(s) 14, 148, 365
HpyCH4IV ACGT 2 cut(s) 16, 190
HpyCH4V TGCA 3 cut(s) 143, 345, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 16, 190
Hsp92II CATG 2 cut(s) 286, 363
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 162, 301
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 45, 64, 72, 117, 144, 161, 217, 290, 303
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 2 cut(s) 98, 353
MaeII ACGT 2 cut(s) 16, 190
MalI GATC 2 cut(s) 164, 303
MboI GATC 2 cut(s) 162, 301
MboII GAAGA 2 cut(s) 206, 329
MfeI CAATTG 2 cut(s) 69, 297
MhlI GDGCHC 2 cut(s) 31, 367
MluCI AATT 5 cut(s) 69, 198, 217, 297, 439
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 2 cut(s) 297, 438
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 438, 444
MslI CAYNNNNRTG 1 cut(s) 7
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 2 cut(s) 69, 297
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeI CATATG 1 cut(s) 8
NdeII GATC 2 cut(s) 162, 301
NlaIII CATG 2 cut(s) 286, 363
NlaIV GGNNCC 2 cut(s) 30, 49
NspI RCATGY 2 cut(s) 286, 363
PaeI GCATGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 400
PmaCI CACGTG 1 cut(s) 191
PmlI CACGTG 1 cut(s) 191
PpsI GAGTC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 130
PspCI CACGTG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 30, 49
PspPI GGNCC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 7
SaqAI TTAA 2 cut(s) 438, 444
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 2 cut(s) 162, 301
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 31, 367
SetI ASST 8 cut(s) 19, 88, 108, 174, 193, 236, 270, 352
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 7
SphI GCATGC 1 cut(s) 286
Sse9I AATT 5 cut(s) 69, 198, 217, 297, 439
SsiI CCGC 2 cut(s) 403, 431
SspI AATATT 1 cut(s) 42
SspMI CTAG 2 cut(s) 98, 353
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 2 cut(s) 19, 193
TasI AATT 5 cut(s) 69, 198, 217, 297, 439
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 438, 444
Tru9I TTAA 2 cut(s) 438, 444
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 2 cut(s) 68, 377
TspRI CASTG 1 cut(s) 150
VneI GTGCAC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 198
XbaI TCTAGA 1 cut(s) 352
XceI RCATGY 2 cut(s) 286, 363
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 2 cut(s) 98, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.