Rmu_sc0009975.1_g000011
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009975.1
OG0015786
Physical Location & Seq
Forward (+)
56200 .. 59815
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009975.1_g000011.1.cds

Sequence Viewer

Length: 1140 bp
atggctgatgataaggaaatggctgcctctgttgtagatggtagcgatccaactggtcacataatttctacaaccataggaggcaaaaatggagagcccaaacagaccattagttatatggcagagcgtgttgtgggaaatgggtcatttggaattgttttccaggcgaaatgcttggaaactggcgagactgtggctataaagaaggttttgcaagacagaagatataagaacagggaacttcaattgatgcgtgtgatggatcatcccaatgtgatttgtttgaagcattgcttcttctctacaacaagcaaaaatgagctttttctcaatttggtcatggaatatgttccggagaccatgtatcaggtcttgaagcattacagcaatgcagaccagagaatgccccttgtctatgtcaagctttacatgtaccagattttcagaggactggcttacatacacaccgttcctggagtttgccatagagatttgaagcctcaaaatttattggtcgatcctctaactcaccaggtcaagctctgtgattttggaagtgccaaaatgctggtgaaaggtgaatcaaacatagcatacatatgttcacgtttctatcgggctccagaactaatatttggtgccacggattatacaacttcaattgatatctggtcagctggctgtgtcctagcagagcttcttttggggcagcctttgtttcctggggaaaatgcagtggaccaacttgtagagatcatcaaggttctgggaacaccaacacgtgaagaaattcgctgtatgaatccaaattatacagatttcaggtttccacagataaaagcacacccttggcacaaggttttccacaagcgcatgcctccagaagcaattgatctggcttcaagactgctacaatactctccaagtcttcgttgcacagctctagaagcatgtgcacatcctttctttgacgaactccgtgagtccaatgcccgcctaccaaatggtcgcccattgcctccgctttttaattttaagcaagagttgtccggcgcttctccagagcttatcaacaagttgattcctgatcatgtgaaacgccaaatgggtctccctttcttgcatgcggctggcacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase

Protein Analysis

379

Amino Acids

42.85

Weight (kDa)

8.25

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18710
fragaria_vesca FvH4_3g07480
rosa_chinensis RchiOBHm_Chr5g0011371
rosa_laevigata RLG00000031827
rosa_multiflora Rmu_co8427111.1_g000001 Rmu_sc0009975.1_g000011
rosa_roxburghii Rroxscaffold_1G00065080
rosa_rugosa Rorug04G0456500 Rorug04G0456600 Rorug04G0456600
rosa_samantha Rh5AG088300 Rh5BG083300 Rh5CG096600 Rh5DG083200
rosa_wichuraiana Rw5G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 638
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 3 cut(s) 994, 1022, 1127
AclWI GGATC 3 cut(s) 41, 270, 512
AcsI RAATTY 2 cut(s) 505, 789
AcvI CACGTG 1 cut(s) 782
AfaI GTAC 1 cut(s) 434
AflIII ACRYGT 2 cut(s) 429, 779
AgsI TTSAA 6 cut(s) 245, 286, 376, 496, 660, 903
AjnI CCWGG 4 cut(s) 162, 472, 531, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 618, 650
AluBI AGCT 7 cut(s) 322, 424, 541, 677, 697, 941, 1066
AluI AGCT 7 cut(s) 322, 424, 541, 677, 697, 941, 1066
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 3 cut(s) 182, 350, 1115
Alw44I GTGCAC 1 cut(s) 954
AlwI GGATC 3 cut(s) 41, 270, 512
Aor13HI TCCGGA 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 2 cut(s) 23, 709
ApoI RAATTY 2 cut(s) 505, 789
Asp700I GAANNNNTTC 2 cut(s) 348, 789
AspLEI GCGC 2 cut(s) 873, 1055
AspS9I GGNCC 1 cut(s) 739
AsuHPI GGTGA 3 cut(s) 521, 583, 590
AvaII GGWCC 1 cut(s) 739
BaeGI GKGCMC 1 cut(s) 958
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 99, 622
BbrPI CACGTG 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 958
BbvI GCAGC 2 cut(s) 10, 721
BccI CCATC 2 cut(s) 32, 253
BciT130I CCWGG 4 cut(s) 164, 474, 533, 723
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 3 cut(s) 182, 350, 1115
BfaI CTAG 2 cut(s) 689, 944
BfoI RGCGCY 1 cut(s) 1056
BisI GCNGC 3 cut(s) 24, 710, 1128
BlsI GCNGC 3 cut(s) 25, 711, 1129
Bme1390I CCNGG 4 cut(s) 164, 474, 533, 723
Bme18I GGWCC 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 739
BmiI GGNNCC 2 cut(s) 621, 640
BmrFI CCNGG 4 cut(s) 164, 474, 533, 723
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 920
BpmI CTGGAG 4 cut(s) 495, 606, 864, 1044
BsaAI YACGTR 1 cut(s) 782
BsaI GGTCTC 2 cut(s) 350, 1115
BsaJI CCNNGG 3 cut(s) 642, 722, 848
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse1I ACTGG 3 cut(s) 58, 187, 456
Bse3DI GCAATG 3 cut(s) 289, 394, 1013
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 4 cut(s) 164, 474, 533, 723
BseDI CCNNGG 3 cut(s) 642, 722, 848
BseGI GGATG 2 cut(s) 265, 958
BseMI GCAATG 3 cut(s) 289, 394, 1013
BseNI ACTGG 3 cut(s) 58, 187, 456
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 2 cut(s) 10, 721
BshNI GGYRCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 2 cut(s) 353, 1050
BsmAI GTCTC 3 cut(s) 182, 350, 1115
BsmI GAATGC 1 cut(s) 408
Bso31I GGTCTC 2 cut(s) 350, 1115
Bsp1286I GDGCHC 3 cut(s) 99, 622, 958
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
BspACI CCGC 3 cut(s) 994, 1022, 1127
BspEI TCCGGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 621, 640
BspPI GGATC 3 cut(s) 41, 270, 512
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 2 cut(s) 350, 1115
BsrDI GCAATG 3 cut(s) 289, 394, 1013
BsrI ACTGG 3 cut(s) 58, 187, 456
BssECI CCNNGG 3 cut(s) 642, 722, 848
BssMI GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
BssT1I CCWWGG 1 cut(s) 848
Bst2UI CCWGG 4 cut(s) 164, 474, 533, 723
Bst4CI ACNGT 2 cut(s) 193, 469
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 5 cut(s) 679, 875, 994, 1125, 1132
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 265, 958
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 873, 1055
BstKTI GATC 6 cut(s) 49, 265, 520, 756, 895, 1090
BstMAI GTCTC 3 cut(s) 182, 350, 1115
BstMBI GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
BstMWI GCNNNNNNNGC 1 cut(s) 947
BstNI CCWGG 4 cut(s) 164, 474, 533, 723
BstNSI RCATGY 4 cut(s) 433, 877, 954, 1127
BstSCI CCNGG 4 cut(s) 162, 472, 531, 721
BstSLI GKGCMC 1 cut(s) 958
BstV1I GCAGC 2 cut(s) 10, 721
BstV2I GAAGAC 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 568
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 265, 958
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 5 cut(s) 679, 875, 994, 1125, 1132
CfoI GCGC 2 cut(s) 873, 1055
Cfr13I GGNCC 1 cut(s) 739
CsiI ACCWGGT 1 cut(s) 531
Csp6I GTAC 1 cut(s) 433
CviAII CATG 7 cut(s) 340, 361, 430, 874, 951, 1091, 1124
CviQI GTAC 1 cut(s) 433
DpnI GATC 6 cut(s) 48, 264, 519, 755, 894, 1089
DpnII GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
Eco130I CCWWGG 1 cut(s) 848
Eco24I GRGCYC 2 cut(s) 99, 622
Eco31I GGTCTC 2 cut(s) 350, 1115
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 739
Eco72I CACGTG 1 cut(s) 782
EcoRII CCWGG 4 cut(s) 162, 472, 531, 721
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 848
EcoT38I GRGCYC 2 cut(s) 99, 622
ErhI CCWWGG 1 cut(s) 848
FaeI CATG 7 cut(s) 343, 364, 433, 877, 954, 1094, 1127
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 7 cut(s) 339, 360, 429, 873, 950, 1090, 1123
FauI CCCGC 1 cut(s) 1001
FauNDI CATATG 1 cut(s) 599
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 3 cut(s) 24, 710, 1128
FokI GGATG 2 cut(s) 252, 945
FriOI GRGCYC 2 cut(s) 99, 622
Fsp4HI GCNGC 3 cut(s) 24, 710, 1128
FspBI CTAG 2 cut(s) 689, 944
GlaI GCGC 2 cut(s) 872, 1054
GluI GCNGC 3 cut(s) 24, 710, 1128
GsuI CTGGAG 4 cut(s) 495, 606, 864, 1044
HaeII RGCGCY 1 cut(s) 1056
HapII CCGG 2 cut(s) 353, 1050
HhaI GCGC 2 cut(s) 873, 1055
Hin1II CATG 7 cut(s) 343, 364, 433, 877, 954, 1094, 1127
Hin6I GCGC 2 cut(s) 871, 1053
HinP1I GCGC 2 cut(s) 871, 1053
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 4 cut(s) 581, 802, 983, 1081
HpaII CCGG 2 cut(s) 353, 1050
HphI GGTGA 3 cut(s) 521, 583, 590
Hpy166II GTNNAC 3 cut(s) 605, 739, 956
Hpy188I TCNGA 1 cut(s) 446
Hpy188III TCNNGA 8 cut(s) 353, 373, 623, 881, 903, 944, 1061, 1085
Hpy8I GTNNAC 3 cut(s) 605, 739, 956
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 193, 469
HpyCH4IV ACGT 2 cut(s) 607, 781
HpyCH4V TGCA 6 cut(s) 214, 392, 734, 936, 956, 1123
HpyF10VI GCNNNNNNNGC 1 cut(s) 947
HpySE526I ACGT 2 cut(s) 607, 781
Hsp92II CATG 7 cut(s) 343, 364, 433, 877, 954, 1094, 1127
HspAI GCGC 2 cut(s) 871, 1053
Kpn2I TCCGGA 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 2 cut(s) 10, 721
LweI GCATC 1 cut(s) 240
MabI ACCWGGT 1 cut(s) 531
MaeI CTAG 2 cut(s) 689, 944
MaeII ACGT 2 cut(s) 607, 781
MaeIII GTNAC 1 cut(s) 56
MalI GATC 6 cut(s) 48, 264, 519, 755, 894, 1089
MboI GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
MboII GAAGA 4 cut(s) 234, 289, 797, 920
MfeI CAATTG 3 cut(s) 245, 660, 888
MhlI GDGCHC 3 cut(s) 99, 622, 958
MlyI GAGTC 1 cut(s) 992
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 7 cut(s) 37, 74, 440, 510, 531, 888, 1029
MroI TCCGGA 1 cut(s) 352
MroXI GAANNNNTTC 2 cut(s) 348, 789
MseI TTAA 2 cut(s) 1029, 1035
MslI CAYNNNNRTG 2 cut(s) 270, 598
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 2 cut(s) 353, 1050
MspR9I CCNGG 4 cut(s) 164, 474, 533, 723
MunI CAATTG 3 cut(s) 245, 660, 888
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 4 cut(s) 164, 474, 533, 723
MwoI GCNNNNNNNGC 1 cut(s) 947
NdeI CATATG 1 cut(s) 599
NdeII GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
NlaIII CATG 7 cut(s) 343, 364, 433, 877, 954, 1094, 1127
NlaIV GGNNCC 2 cut(s) 621, 640
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 4 cut(s) 433, 877, 954, 1127
PaeI GCATGC 2 cut(s) 877, 1127
PciI ACATGT 1 cut(s) 429
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 348, 789
PfeI GAWTC 3 cut(s) 581, 802, 1081
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 3 cut(s) 25, 711, 1129
PleI GAGTC 1 cut(s) 991
PmaCI CACGTG 1 cut(s) 782
PmlI CACGTG 1 cut(s) 782
PpsI GAGTC 1 cut(s) 991
Ppu21I YACGTR 1 cut(s) 782
PscI ACATGT 1 cut(s) 429
Psp6I CCWGG 4 cut(s) 162, 472, 531, 721
PspCI CACGTG 1 cut(s) 782
PspGI CCWGG 4 cut(s) 162, 472, 531, 721
PspN4I GGNNCC 2 cut(s) 621, 640
PspPI GGNCC 1 cut(s) 739
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 270, 598
SaqAI TTAA 2 cut(s) 1029, 1035
SatI GCNGC 3 cut(s) 24, 710, 1128
Sau3AI GATC 6 cut(s) 46, 262, 517, 753, 892, 1087
Sau96I GGNCC 1 cut(s) 739
SchI GAGTC 1 cut(s) 992
ScrFI CCNGG 4 cut(s) 164, 474, 533, 723
SduI GDGCHC 3 cut(s) 99, 622, 958
SexAI ACCWGGT 1 cut(s) 531
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 739
SmiMI CAYNNNNRTG 2 cut(s) 270, 598
SphI GCATGC 2 cut(s) 877, 1127
SsiI CCGC 3 cut(s) 994, 1022, 1127
SspI AATATT 1 cut(s) 633
SspMI CTAG 2 cut(s) 689, 944
StyD4I CCNGG 4 cut(s) 162, 472, 531, 721
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 2 cut(s) 193, 469
TaiI ACGT 2 cut(s) 610, 784
TaqI TCGA 1 cut(s) 516
TauI GCSGC 1 cut(s) 1130
TfiI GAWTC 3 cut(s) 581, 802, 1081
Tru1I TTAA 2 cut(s) 1029, 1035
Tru9I TTAA 2 cut(s) 1029, 1035
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 23, 709
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 815
TspGWI ACGGA 2 cut(s) 659, 968
TspRI CASTG 1 cut(s) 741
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 1 cut(s) 739
XapI RAATTY 2 cut(s) 505, 789
XbaI TCTAGA 1 cut(s) 943
XceI RCATGY 4 cut(s) 433, 877, 954, 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmnI GAANNNNTTC 2 cut(s) 348, 789
XspI CTAG 2 cut(s) 689, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.