Rroxscaffold_1G00065080
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
86840189 .. 86844613
4425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065080.1

Sequence Viewer

Length: 1122 bp
ATGGCTGCCTCTGTTGTAGATGGTAGCGATCCAACTGGTCACATAATTTCCACAACCATAGGAGGCAAAAATGGAGAGCCCAAACAGACTATTAGTTATATGGCAGAGCGTGTTGTGGGAACTGGGTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGCGAGACTGTGGCTATAAAGAAGGTTTTGCAAGACAGAAGATATAAGAACAGGGAACTTCAATTGATGCGTGTGATGGATCATCCCAATGTGATTTGTTTGAAGCATTGCTTCTTCTCTACAACAAGCAAAAATGAGCTTTTTCTCAATTTGGTCATGGAATATGTTCCGGAGACCATGTATCGGGTCTTGAAGCATTACAGCAATGCAAACCAGAGAATGCCCCTTGTCTATGTCAAGCTTTACATGTACCAGATTTTCAGAGGACTGGCTTACATACACACCGTTCCTGGAGTTTGCCATAGAGATTTGAAGCCTCAAAATTTATTGGTCGATCCTCTAACTCACCAGGTCAAGCTCTGTGATTTTGGAAGTGCCAAAATGCTGGTGAAAGGTGAAGCAAACATAGCATACATATGTTCACGTTTCTATCGGGCTCCGGAACTAATATTTGGTGCCACGGATTATACAACTTCAATTGATATCTGGTCAGCTGGCTGTGTCCTAGCAGAGCTTCTTTTGGGCCAGCCTTTGTTTCCTGGGGAAAATGCAGTGGACCAACTTGTAGAGATCATCAAGGTTCTGGGAACACCAACACGTGAAGAAATTCGCTGTATGAATCCAAATTATACAGATTTCAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGGTTTTCCACAAGCGCATGCCTCCAGAAGCAATTGATCTGGCTTCAAGACTGCTACAATACTCTCCAAGTCTTCGTTGCACAGCTCTAGAAGCATGTGCACATCCTTTCTTTGACGAACTCCGAGAGTCCAATGCCCGCCTACCAAATGGTCGCCCATTGCCTCCGCTTTTTAATTTTAAGCAAGAGTTGTCCGGCGCTTCCCCAGAGCTTATCAACAAGTTGATTCCTGATCATGTGAAACGCCAAATGGGTCTCCCTTTCTTGCATGCGGCTGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

373

Amino Acids

42.15

Weight (kDa)

8.81

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 34 - 317 1.1e-61 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 237 1.2e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015786)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 620
AccIII TCCGGA 2 cut(s) 334, 604
AciI CCGC 3 cut(s) 976, 1004, 1109
AclWI GGATC 3 cut(s) 23, 252, 494
AcsI RAATTY 2 cut(s) 487, 771
AcvI CACGTG 1 cut(s) 764
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 2 cut(s) 411, 761
AgsI TTSAA 6 cut(s) 227, 268, 358, 478, 642, 885
AjnI CCWGG 4 cut(s) 144, 454, 513, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 7 cut(s) 304, 406, 523, 659, 679, 923, 1048
AluI AGCT 7 cut(s) 304, 406, 523, 659, 679, 923, 1048
Alw21I GWGCWC 1 cut(s) 940
Alw26I GTCTC 3 cut(s) 164, 332, 1097
Alw44I GTGCAC 1 cut(s) 936
AlwI GGATC 3 cut(s) 23, 252, 494
Aor13HI TCCGGA 2 cut(s) 334, 604
AoxI GGCC 1 cut(s) 688
ApaLI GTGCAC 1 cut(s) 936
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 487, 771
Asp700I GAANNNNTTC 2 cut(s) 330, 771
AspLEI GCGC 2 cut(s) 855, 1037
AspS9I GGNCC 2 cut(s) 688, 721
AsuHPI GGTGA 3 cut(s) 503, 565, 572
AvaII GGWCC 1 cut(s) 721
BaeGI GKGCMC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 620
BanII GRGCYC 2 cut(s) 81, 604
BbrPI CACGTG 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 940
BccI CCATC 2 cut(s) 14, 235
BciT130I CCWGG 4 cut(s) 146, 456, 515, 705
BclI TGATCA 1 cut(s) 1069
BcoDI GTCTC 3 cut(s) 164, 332, 1097
BfaI CTAG 2 cut(s) 671, 926
BfoI RGCGCY 1 cut(s) 1038
BisI GCNGC 2 cut(s) 6, 1110
BlsI GCNGC 2 cut(s) 7, 1111
Bme1390I CCNGG 4 cut(s) 146, 456, 515, 705
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 688, 721
BmiI GGNNCC 2 cut(s) 603, 622
BmrFI CCNGG 4 cut(s) 146, 456, 515, 705
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 2 cut(s) 477, 846
BsaAI YACGTR 1 cut(s) 764
BsaI GGTCTC 2 cut(s) 332, 1097
BsaJI CCNNGG 3 cut(s) 624, 704, 830
BsaWI WCCGGW 2 cut(s) 334, 604
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 4 cut(s) 40, 127, 169, 438
Bse3DI GCAATG 3 cut(s) 271, 376, 995
BseAI TCCGGA 2 cut(s) 334, 604
BseBI CCWGG 4 cut(s) 146, 456, 515, 705
BseDI CCNNGG 3 cut(s) 624, 704, 830
BseGI GGATG 2 cut(s) 247, 940
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 3 cut(s) 271, 376, 995
BseNI ACTGG 4 cut(s) 40, 127, 169, 438
BseSI GKGCMC 1 cut(s) 940
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 940
BsiSI CCGG 3 cut(s) 335, 605, 1032
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 164, 332, 1097
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 1 cut(s) 690
Bso31I GGTCTC 2 cut(s) 332, 1097
Bsp1286I GDGCHC 3 cut(s) 81, 604, 940
Bsp13I TCCGGA 2 cut(s) 334, 604
Bsp143I GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
BspACI CCGC 3 cut(s) 976, 1004, 1109
BspANI GGCC 1 cut(s) 690
BspEI TCCGGA 2 cut(s) 334, 604
BspLI GGNNCC 2 cut(s) 603, 622
BspPI GGATC 3 cut(s) 23, 252, 494
BspT107I GGYRCC 1 cut(s) 620
BspTNI GGTCTC 2 cut(s) 332, 1097
BsrDI GCAATG 3 cut(s) 271, 376, 995
BsrI ACTGG 4 cut(s) 40, 127, 169, 438
BssECI CCNNGG 3 cut(s) 624, 704, 830
BssMI GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
BssT1I CCWWGG 1 cut(s) 830
Bst2UI CCWGG 4 cut(s) 146, 456, 515, 705
Bst4CI ACNGT 2 cut(s) 175, 451
BstBAI YACGTR 1 cut(s) 764
BstC8I GCNNGC 6 cut(s) 661, 692, 857, 976, 1107, 1114
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 247, 940
BstH2I RGCGCY 1 cut(s) 1038
BstHHI GCGC 2 cut(s) 855, 1037
BstKTI GATC 6 cut(s) 31, 247, 502, 738, 877, 1072
BstMAI GTCTC 3 cut(s) 164, 332, 1097
BstMBI GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 572, 929
BstNI CCWGG 4 cut(s) 146, 456, 515, 705
BstNSI RCATGY 4 cut(s) 415, 859, 936, 1109
BstSCI CCNGG 4 cut(s) 144, 454, 513, 703
BstSLI GKGCMC 1 cut(s) 940
BstV2I GAAGAC 1 cut(s) 902
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 690
BtgI CCRYGG 1 cut(s) 624
BtsCI GGATG 2 cut(s) 247, 940
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 1 cut(s) 723
Cac8I GCNNGC 6 cut(s) 661, 692, 857, 976, 1107, 1114
CfoI GCGC 2 cut(s) 855, 1037
Cfr13I GGNCC 2 cut(s) 688, 721
CsiI ACCWGGT 1 cut(s) 513
Csp6I GTAC 1 cut(s) 415
CviAII CATG 7 cut(s) 322, 343, 412, 856, 933, 1073, 1106
CviQI GTAC 1 cut(s) 415
DpnI GATC 6 cut(s) 30, 246, 501, 737, 876, 1071
DpnII GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
Eco130I CCWWGG 1 cut(s) 830
Eco24I GRGCYC 2 cut(s) 81, 604
Eco31I GGTCTC 2 cut(s) 332, 1097
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 721
Eco72I CACGTG 1 cut(s) 764
EcoRII CCWGG 4 cut(s) 144, 454, 513, 703
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 830
EcoT38I GRGCYC 2 cut(s) 81, 604
ErhI CCWWGG 1 cut(s) 830
FaeI CATG 7 cut(s) 325, 346, 415, 859, 936, 1076, 1109
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 7 cut(s) 321, 342, 411, 855, 932, 1072, 1105
FauI CCCGC 1 cut(s) 983
FauNDI CATATG 1 cut(s) 581
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 2 cut(s) 6, 1110
FokI GGATG 2 cut(s) 234, 927
FriOI GRGCYC 2 cut(s) 81, 604
Fsp4HI GCNGC 2 cut(s) 6, 1110
FspBI CTAG 2 cut(s) 671, 926
GlaI GCGC 2 cut(s) 854, 1036
GluI GCNGC 2 cut(s) 6, 1110
GsuI CTGGAG 2 cut(s) 477, 846
HaeII RGCGCY 1 cut(s) 1038
HaeIII GGCC 1 cut(s) 690
HapII CCGG 3 cut(s) 335, 605, 1032
HhaI GCGC 2 cut(s) 855, 1037
Hin1II CATG 7 cut(s) 325, 346, 415, 859, 936, 1076, 1109
Hin6I GCGC 2 cut(s) 853, 1035
HinP1I GCGC 2 cut(s) 853, 1035
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 784, 965, 1063
HpaII CCGG 3 cut(s) 335, 605, 1032
HphI GGTGA 3 cut(s) 503, 565, 572
Hpy166II GTNNAC 3 cut(s) 587, 721, 938
Hpy188I TCNGA 2 cut(s) 428, 962
Hpy188III TCNNGA 7 cut(s) 335, 355, 605, 863, 885, 926, 1067
Hpy8I GTNNAC 3 cut(s) 587, 721, 938
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 175, 451
HpyCH4IV ACGT 2 cut(s) 589, 763
HpyCH4V TGCA 6 cut(s) 196, 374, 716, 918, 938, 1105
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 929
HpySE526I ACGT 2 cut(s) 589, 763
Hsp92II CATG 7 cut(s) 325, 346, 415, 859, 936, 1076, 1109
HspAI GCGC 2 cut(s) 853, 1035
Kpn2I TCCGGA 2 cut(s) 334, 604
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
LmnI GCTCC 1 cut(s) 607
LweI GCATC 1 cut(s) 222
MabI ACCWGGT 1 cut(s) 513
MaeI CTAG 2 cut(s) 671, 926
MaeII ACGT 2 cut(s) 589, 763
MaeIII GTNAC 1 cut(s) 38
MalI GATC 6 cut(s) 30, 246, 501, 737, 876, 1071
MboI GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
MboII GAAGA 4 cut(s) 216, 271, 779, 902
MfeI CAATTG 3 cut(s) 227, 642, 870
MhlI GDGCHC 3 cut(s) 81, 604, 940
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 7 cut(s) 19, 56, 422, 492, 513, 870, 1011
MroI TCCGGA 2 cut(s) 334, 604
MroXI GAANNNNTTC 2 cut(s) 330, 771
MseI TTAA 2 cut(s) 1011, 1017
MslI CAYNNNNRTG 2 cut(s) 252, 580
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 3 cut(s) 335, 605, 1032
MspR9I CCNGG 4 cut(s) 146, 456, 515, 705
MunI CAATTG 3 cut(s) 227, 642, 870
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 4 cut(s) 146, 456, 515, 705
MwoI GCNNNNNNNGC 2 cut(s) 572, 929
NdeI CATATG 1 cut(s) 581
NdeII GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
NlaIII CATG 7 cut(s) 325, 346, 415, 859, 936, 1076, 1109
NlaIV GGNNCC 2 cut(s) 603, 622
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 4 cut(s) 415, 859, 936, 1109
PaeI GCATGC 2 cut(s) 859, 1109
PciI ACATGT 1 cut(s) 411
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 2 cut(s) 330, 771
PfeI GAWTC 2 cut(s) 784, 1063
PfoI TCCNGGA 1 cut(s) 454
PkrI GCNGC 2 cut(s) 7, 1111
PleI GAGTC 1 cut(s) 973
PmaCI CACGTG 1 cut(s) 764
PmlI CACGTG 1 cut(s) 764
PpsI GAGTC 1 cut(s) 973
Ppu21I YACGTR 1 cut(s) 764
PscI ACATGT 1 cut(s) 411
Psp6I CCWGG 4 cut(s) 144, 454, 513, 703
PspCI CACGTG 1 cut(s) 764
PspGI CCWGG 4 cut(s) 144, 454, 513, 703
PspN4I GGNNCC 2 cut(s) 603, 622
PspPI GGNCC 2 cut(s) 688, 721
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 2 cut(s) 252, 580
SaqAI TTAA 2 cut(s) 1011, 1017
SatI GCNGC 2 cut(s) 6, 1110
Sau3AI GATC 6 cut(s) 28, 244, 499, 735, 874, 1069
Sau96I GGNCC 2 cut(s) 688, 721
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 4 cut(s) 146, 456, 515, 705
SduI GDGCHC 3 cut(s) 81, 604, 940
SexAI ACCWGGT 1 cut(s) 513
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 2 cut(s) 252, 580
SphI GCATGC 2 cut(s) 859, 1109
SsiI CCGC 3 cut(s) 976, 1004, 1109
SspI AATATT 1 cut(s) 615
SspMI CTAG 2 cut(s) 671, 926
StyD4I CCNGG 4 cut(s) 144, 454, 513, 703
StyI CCWWGG 1 cut(s) 830
TaaI ACNGT 2 cut(s) 175, 451
TaiI ACGT 2 cut(s) 592, 766
TaqI TCGA 1 cut(s) 498
TauI GCSGC 1 cut(s) 1112
TfiI GAWTC 2 cut(s) 784, 1063
Tru1I TTAA 2 cut(s) 1011, 1017
Tru9I TTAA 2 cut(s) 1011, 1017
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 797
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 723
VneI GTGCAC 1 cut(s) 936
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 2 cut(s) 487, 771
XbaI TCTAGA 1 cut(s) 925
XceI RCATGY 4 cut(s) 415, 859, 936, 1109
XmnI GAANNNNTTC 2 cut(s) 330, 771
XspI CTAG 2 cut(s) 671, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.