Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8431547.1

Orthogroup ID

OG0009651

Physical Location & Seq

Genomic Coordinates Reverse (-)

127 .. 1500

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8431547.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

gccgtcaaggcttggagcgagcagccgtcgtttactgcggatttgcagagggcgtttcgtgacgatgcgtggaggaatatagtgcctggcctgcctggtgtgttgctccgctgcactgccaagctttcgagtgcaattgcttccggtaccattttggttgctgctcaggttaggaagaagcttgtaaatgattggcttccggttctgattgtatgcaaagacaatacatcacctctgacgccaaataacagacccttatacctggacctggaagagacattcctcaaaataatctctacactgccgatgttagatgcaaaagagttgttgcagcagtgccttgtcttctcaacccgaaattttgatgattgccctcatttggtcatggctttcaacacctggttccgccgtgctgctcgaccccctcaaggaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

9.07

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009651)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08750
malus_domestica	MD05G1066700.v1.1 MD10G1076600.v1.1
prunus_persica	Prupe.8G097400_v2.0.a1
pyrus_communis	pycom01g11850 pycom05g05770 pycom10g05990 pycom11g13950
rosa_chinensis	RchiOBHm_Chr6g0264211
rosa_laevigata	RLG00000014280
rosa_multiflora	Rmu_co8431547.1_g000001 Rmu_sc0027696.1_g000001 Rmu_sc0027697.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431610 Rroxscaffold_7G00203400
rosa_rugosa	Rorug06G0010100
rosa_samantha	Rh6AG130200 Rh6BG127500 Rh6CG126100 Rh6DG112800
rosa_wichuraiana	Rw6G011340 Rw6G011400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	3 cut(s)	38, 109, 406
AcsI	RAATTY	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	268, 379, 428
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	5 cut(s)	85, 94, 261, 267, 398
AluBI	AGCT	2 cut(s)	124, 181
AluI	AGCT	2 cut(s)	124, 181
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	5 cut(s)	22, 111, 161, 331, 413
ApoI	RAATTY	1 cut(s)	358
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	5 cut(s)	34, 98, 148, 343, 400
BceAI	ACGGC	2 cut(s)	10, 393
BciT130I	CCWGG	5 cut(s)	87, 96, 263, 269, 400
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	8
BisI	GCNGC	5 cut(s)	23, 112, 162, 332, 414
BlsI	GCNGC	5 cut(s)	24, 113, 163, 333, 415
Bme1390I	CCNGG	5 cut(s)	87, 96, 263, 269, 400
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	148, 404
BmrFI	CCNGG	5 cut(s)	87, 96, 263, 269, 400
BmsI	GCATC	2 cut(s)	55, 304
BpiI	GAAGAC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	239
BsaWI	WCCGGW	2 cut(s)	143, 199
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 379, 428
BseBI	CCWGG	5 cut(s)	87, 96, 263, 269, 400
BseLI	CCNNNNNNNGG	3 cut(s)	268, 379, 428
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	5 cut(s)	34, 98, 148, 343, 400
BsgI	GTGCAG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	144, 200
BslI	CCNNNNNNNGG	3 cut(s)	268, 379, 428
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	90
BspACI	CCGC	3 cut(s)	38, 109, 406
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	148, 404
BspT107I	GGYRCC	1 cut(s)	146
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	5 cut(s)	87, 96, 263, 269, 400
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	20, 92
BstDEI	CTNAG	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	8, 91
BstNI	CCWGG	5 cut(s)	87, 96, 263, 269, 400
BstSCI	CCNGG	5 cut(s)	85, 94, 261, 267, 398
BstV1I	GCAGC	5 cut(s)	34, 98, 148, 343, 400
BstV2I	GAAGAC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	90
BtsI	GCAGTG	3 cut(s)	114, 299, 341
BtsIMutI	CAGTG	3 cut(s)	114, 299, 341
Cac8I	GCNNGC	2 cut(s)	20, 92
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	247
CsiI	ACCWGGT	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	7 cut(s)	11, 25, 90, 124, 181, 196, 389
CviKI_1	RGCY	7 cut(s)	11, 25, 90, 124, 181, 196, 389
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	265
EcoRII	CCWGG	5 cut(s)	85, 94, 261, 267, 398
FaeI	CATG	1 cut(s)	388
FaiI	YATR	4 cut(s)	80, 214, 259, 386
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	23, 112, 162, 332, 414
Fsp4HI	GCNGC	5 cut(s)	23, 112, 162, 332, 414
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	5 cut(s)	23, 112, 162, 332, 414
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	144, 200
HgaI	GACGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	122, 179
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	2 cut(s)	144, 200
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	207, 237
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4V	TGCA	6 cut(s)	46, 114, 134, 216, 317, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	8, 91
HpyF3I	CTNAG	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	15, 111
Lsp1109I	GCAGC	5 cut(s)	34, 98, 148, 343, 400
LweI	GCATC	2 cut(s)	55, 304
MabI	ACCWGGT	1 cut(s)	398
MaeI	CTAG	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	187, 284, 337
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	2 cut(s)	135, 358
MnlI	CCTC	6 cut(s)	42, 66, 243, 293, 384, 435
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	144, 200
MspR9I	CCNGG	5 cut(s)	87, 96, 263, 269, 400
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	5 cut(s)	87, 96, 263, 269, 400
MwoI	GCNNNNNNNGC	2 cut(s)	8, 91
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	148, 404
NmuCI	GTSAC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	24, 113, 163, 333, 415
Psp6I	CCWGG	5 cut(s)	85, 94, 261, 267, 398
PspGI	CCWGG	5 cut(s)	85, 94, 261, 267, 398
PspN4I	GGNNCC	2 cut(s)	148, 404
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SatI	GCNGC	5 cut(s)	23, 112, 162, 332, 414
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	5 cut(s)	87, 96, 263, 269, 400
SetI	ASST	7 cut(s)	126, 171, 183, 235, 264, 270, 401
SexAI	ACCWGGT	1 cut(s)	398
SfaNI	GCATC	2 cut(s)	55, 304
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	135, 358
SsiI	CCGC	3 cut(s)	38, 109, 406
SspMI	CTAG	1 cut(s)	436
StyD4I	CCNGG	5 cut(s)	85, 94, 261, 267, 398
TaqI	TCGA	2 cut(s)	128, 418
TasI	AATT	2 cut(s)	135, 358
TfiI	GAWTC	1 cut(s)	432
TscAI	CASTG	3 cut(s)	121, 306, 341
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	5 cut(s)	22, 111, 161, 331, 413
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	3 cut(s)	121, 306, 341
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	358
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.