Rorug06G0010100

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009651
Physical Location & Seq
Reverse (-)
1475011 .. 1478846
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0010100.1

Sequence Viewer

Length: 1188 bp
ATGAAACCTCCATTACTAGTTTATCTGCTTTTTCCAACTTGTCGCGCCCCTTACGGCCTTGCAAGTCCAATTCTTCGTGTCACGAAAAGGATATATCTCAAAGAGCACAGATACCCCACTCCTCACCTCACTCTACCCCAATTACGTGTCGCATCTCCACTGGCTGCATCCCAACAAGGTAGGGTTAGAGTTAGAAATTTAGGGTTTTCTGATTTGGTACTTTTTGCCATTCTCTGTCTCGTTTCAATGGAAGGAGGAGAAATTGGGGAGTTGCAGGACTGGGAGGTCCTCCACAGCGCGGAGGAGGACCCGGCCGCCCCGGTAGAAAGCCATGGAAGCTTCTCGTCGATTGAGGCTGACGCCGAGGGGATGATCAGGTCTGATTATTTCTCGTTGGAGAATCAGGGGAGGTATGCCTATGCTAAGAGTGAAGAGGGTTCGGTTGAGTCCGATAACCCGAGCTGGATTGACCCGGTTCAGGTGACTACGTATAAGGAATCGGGTGGGTTCTGGTCCGATTCCGCCAGTGATCGGTCCGATGACCGGAAAAGTCATGATTTTGAGGTGAGAGGCGAGTTGGGTATCGCCGGAAATGAGCAAAGTCGCGTGCTTGCGGAGCCTGTGGAGGAGAGTTTGGGGAAATTCGGGTCGGATGAGGCGGAAGGGAAAGTGAGTTTCCAAGAAATTGGGGAAGTTGGAAGCGCTGATAAGGATGCGGACAAGTTCTGGTCTGATTCTGGCGGAGAAGGCTTGGTTTCTGTGAAATTTGACAAGGAGGGTGGTTCAAGTGACTCGAACAAGGAATCAGCAGATGAAGAATCGGCTGAGACTGCAGTGGAAGAAGTGAAAACGGTGGCGAAATCGGGTGAGAAGAAGGTGGTCTTGTGGTGGAAGGTTCCATTGGAGGTCTTGAAGTATTGTGTTTTCAAGGTGAGCCCTGTTTGGTCTCTCTCTGTGGCCGCAGCAATAATGGGTTTAGTTATCTTGGGAAGGAGATTGTATAGGATGAAGCGAAAGAGCCAGAGCGTGCACTTCAGAGTTGCTATGGATGATAAGAAGGTATCTCAATTCATGAGTCGTGCTGTGCGTCTCAATGAAGCATTTTCAGTTGTGAGGCGGGTTCCTATTATACGACCTTCACTGCCGGCAACTGGAGTCAATCCATGGCCTGTGATGAGTTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

43.72

Weight (kDa)

5.43

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6821 PF20705 267 - 380 4.1e-15 Family of unknown function (DUF6821)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AccII CGCG 3 cut(s) 45, 299, 606
AciI CCGC 9 cut(s) 299, 315, 522, 614, 659, 716, 741, 960, 1117
AcoI YGGCCR 2 cut(s) 312, 957
AcsI RAATTY 3 cut(s) 196, 641, 764
AcuI CTGAAG 1 cut(s) 1018
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 219
AfeI AGCGCT 1 cut(s) 703
AfiI CCNNNNNNNGG 5 cut(s) 298, 478, 531, 543, 1151
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 246, 786, 913, 928
AhlI ACTAGT 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 2 cut(s) 339, 462
AluI AGCT 2 cut(s) 339, 462
Alw21I GWGCWC 2 cut(s) 108, 1032
Alw26I GTCTC 4 cut(s) 242, 821, 951, 1094
Alw44I GTGCAC 1 cut(s) 1028
Ama87I CYCGRG 1 cut(s) 457
Aor51HI AGCGCT 1 cut(s) 703
AoxI GGCC 4 cut(s) 55, 312, 957, 1166
ApaLI GTGCAC 1 cut(s) 1028
ApeKI GCWGC 2 cut(s) 164, 962
ApoI RAATTY 3 cut(s) 196, 641, 764
AspLEI GCGC 3 cut(s) 47, 299, 704
AspS9I GGNCC 4 cut(s) 286, 307, 513, 534
AsuC2I CCSGG 3 cut(s) 311, 320, 473
AsuHPI GGTGA 5 cut(s) 116, 493, 577, 878, 943
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 4 cut(s) 286, 307, 513, 534
BaeGI GKGCMC 1 cut(s) 1032
BanII GRGCYC 1 cut(s) 938
Bbv12I GWGCWC 2 cut(s) 108, 1032
BbvI GCAGC 2 cut(s) 151, 974
BceAI ACGGC 1 cut(s) 70
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 3 cut(s) 311, 320, 473
BcoDI GTCTC 4 cut(s) 242, 821, 951, 1094
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 831
BfoI RGCGCY 1 cut(s) 705
BisI GCNGC 4 cut(s) 165, 315, 960, 963
BlsI GCNGC 4 cut(s) 166, 316, 961, 964
Bme1390I CCNGG 3 cut(s) 311, 320, 473
Bme18I GGWCC 4 cut(s) 286, 307, 513, 534
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 286, 307, 513, 534
BmiI GGNNCC 4 cut(s) 309, 618, 897, 1122
BmrFI CCNGG 3 cut(s) 311, 320, 473
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 3 cut(s) 161, 176, 703
BmuI ACTGGG 1 cut(s) 289
BpmI CTGGAG 1 cut(s) 1173
BpuMI CCSGG 3 cut(s) 311, 320, 473
BsaAI YACGTR 2 cut(s) 146, 489
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 4 cut(s) 318, 331, 363, 1163
BsaWI WCCGGW 1 cut(s) 543
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 478, 531, 543, 1151
Bse118I RCCGGY 1 cut(s) 1144
Bse1I ACTGG 4 cut(s) 165, 284, 525, 1156
BseDI CCNNGG 4 cut(s) 318, 331, 363, 1163
BseGI GGATG 6 cut(s) 167, 375, 658, 718, 1011, 1054
BseLI CCNNNNNNNGG 5 cut(s) 298, 478, 531, 543, 1151
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 4 cut(s) 165, 284, 525, 1156
BseRI GAGGAG 4 cut(s) 111, 270, 317, 641
BseSI GKGCMC 1 cut(s) 1032
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 151, 974
Bsh1236I CGCG 3 cut(s) 45, 299, 606
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 4 cut(s) 57, 314, 959, 1168
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 108, 1032
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 6 cut(s) 311, 320, 473, 544, 588, 1145
BslI CCNNNNNNNGG 5 cut(s) 298, 478, 531, 543, 1151
BsmAI GTCTC 4 cut(s) 242, 821, 951, 1094
BsmBI CGTCTC 1 cut(s) 1094
BsnI GGCC 4 cut(s) 57, 314, 959, 1168
Bso31I GGTCTC 1 cut(s) 951
BsoBI CYCGRG 1 cut(s) 457
Bsp1286I GDGCHC 3 cut(s) 108, 938, 1032
Bsp143I GATC 2 cut(s) 372, 529
Bsp19I CCATGG 2 cut(s) 331, 1163
BspACI CCGC 9 cut(s) 299, 315, 522, 614, 659, 716, 741, 960, 1117
BspANI GGCC 4 cut(s) 57, 314, 959, 1168
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 3 cut(s) 45, 299, 606
BspHI TCATGA 2 cut(s) 553, 1071
BspLI GGNNCC 4 cut(s) 309, 618, 897, 1122
BspMAI CTGCAG 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 1144
BsrI ACTGG 4 cut(s) 165, 284, 525, 1156
BssAI RCCGGY 1 cut(s) 1144
BssECI CCNNGG 4 cut(s) 318, 331, 363, 1163
BssMI GATC 2 cut(s) 372, 529
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 331, 1163
Bst4CI ACNGT 1 cut(s) 853
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 360
BstBAI YACGTR 2 cut(s) 146, 489
BstC8I GCNNGC 4 cut(s) 608, 612, 1028, 1146
BstDEI CTNAG 2 cut(s) 423, 825
BstDSI CCRYGG 2 cut(s) 331, 1163
BstF5I GGATG 6 cut(s) 167, 375, 658, 718, 1011, 1054
BstFNI CGCG 3 cut(s) 45, 299, 606
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 3 cut(s) 47, 299, 704
BstKTI GATC 2 cut(s) 375, 532
BstMAI GTCTC 4 cut(s) 242, 821, 951, 1094
BstMBI GATC 2 cut(s) 372, 529
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 336, 616, 747, 830
BstSCI CCNGG 3 cut(s) 309, 318, 471
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 1032
BstSNI TACGTA 1 cut(s) 489
BstUI CGCG 3 cut(s) 45, 299, 606
BstV1I GCAGC 2 cut(s) 151, 974
BstXI CCANNNNNNTGG 1 cut(s) 686
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 4 cut(s) 57, 314, 959, 1168
BtgI CCRYGG 2 cut(s) 331, 1163
BtsCI GGATG 6 cut(s) 167, 375, 658, 718, 1011, 1054
BtsI GCAGTG 2 cut(s) 840, 1139
BtsIMutI CAGTG 4 cut(s) 158, 532, 840, 1139
Cac8I GCNNGC 4 cut(s) 608, 612, 1028, 1146
CciI TCATGA 2 cut(s) 553, 1071
CfoI GCGC 3 cut(s) 47, 299, 704
Cfr10I RCCGGY 1 cut(s) 1144
Cfr13I GGNCC 4 cut(s) 286, 307, 513, 534
CpoI CGGWCCG 1 cut(s) 534
CseI GACGC 2 cut(s) 368, 1076
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CspI CGGWCCG 1 cut(s) 534
CviAII CATG 4 cut(s) 332, 554, 1072, 1164
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 423, 825
DpnI GATC 2 cut(s) 374, 531
DpnII GATC 2 cut(s) 372, 529
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 312, 957
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EciI GGCGGA 3 cut(s) 511, 674, 756
EclXI CGGCCG 1 cut(s) 312
Eco105I TACGTA 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 331, 1163
Eco24I GRGCYC 1 cut(s) 938
Eco31I GGTCTC 1 cut(s) 951
Eco47I GGWCC 4 cut(s) 286, 307, 513, 534
Eco47III AGCGCT 1 cut(s) 703
Eco52I CGGCCG 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 1018
Eco88I CYCGRG 1 cut(s) 457
EcoO109I RGGNCCY 2 cut(s) 286, 307
EcoT14I CCWWGG 2 cut(s) 331, 1163
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 331, 1163
Esp3I CGTCTC 1 cut(s) 1094
FaeI CATG 4 cut(s) 335, 557, 1075, 1167
FalI AAGNNNNNCTT 2 cut(s) 866, 898
FatI CATG 4 cut(s) 331, 553, 1071, 1163
FauI CCCGC 1 cut(s) 1110
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 165, 315, 960, 963
FokI GGATG 6 cut(s) 154, 382, 665, 725, 1018, 1061
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 4 cut(s) 165, 315, 960, 963
FspBI CTAG 1 cut(s) 17
GlaI GCGC 3 cut(s) 46, 298, 703
GluI GCNGC 4 cut(s) 165, 315, 960, 963
GsuI CTGGAG 1 cut(s) 1173
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 4 cut(s) 57, 314, 959, 1168
HapII CCGG 6 cut(s) 311, 320, 473, 544, 588, 1145
HgaI GACGC 2 cut(s) 368, 1076
HhaI GCGC 3 cut(s) 47, 299, 704
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 4 cut(s) 335, 557, 1075, 1167
Hin6I GCGC 3 cut(s) 45, 297, 702
HinP1I GCGC 3 cut(s) 45, 297, 702
HindIII AAGCTT 1 cut(s) 337
HpaII CCGG 6 cut(s) 311, 320, 473, 544, 588, 1145
HphI GGTGA 5 cut(s) 116, 493, 577, 878, 943
Hpy166II GTNNAC 1 cut(s) 1030
Hpy188I TCNGA 9 cut(s) 211, 382, 451, 517, 538, 652, 733, 1037, 1184
Hpy188III TCNNGA 4 cut(s) 82, 554, 910, 1072
Hpy8I GTNNAC 1 cut(s) 1030
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 8 cut(s) 245, 656, 740, 868, 886, 984, 1051, 1146
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4IV ACGT 2 cut(s) 145, 488
HpyCH4V TGCA 5 cut(s) 62, 167, 274, 833, 1030
HpyF10VI GCNNNNNNNGC 4 cut(s) 336, 616, 747, 830
HpyF3I CTNAG 2 cut(s) 423, 825
HpySE526I ACGT 2 cut(s) 145, 488
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 4 cut(s) 335, 557, 1075, 1167
HspAI GCGC 3 cut(s) 45, 297, 702
KroI GCCGGC 1 cut(s) 1144
KroNI GCCGGC 1 cut(s) 1146
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 372, 529
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 2 cut(s) 151, 974
LweI GCATC 3 cut(s) 161, 176, 703
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 145, 488
MaeIII GTNAC 3 cut(s) 79, 481, 788
MalI GATC 2 cut(s) 374, 531
MboI GATC 2 cut(s) 372, 529
MboII GAAGA 5 cut(s) 65, 443, 827, 851, 883
MhlI GDGCHC 3 cut(s) 108, 938, 1032
MluCI AATT 8 cut(s) 69, 140, 196, 261, 641, 684, 764, 1067
MlyI GAGTC 4 cut(s) 455, 785, 1084, 1164
MmeI TCCRAC 4 cut(s) 59, 375, 630, 676
MroNI GCCGGC 1 cut(s) 1144
MspI CCGG 6 cut(s) 311, 320, 473, 544, 588, 1145
MspR9I CCNGG 3 cut(s) 311, 320, 473
MvnI CGCG 3 cut(s) 45, 299, 606
MwoI GCNNNNNNNGC 4 cut(s) 336, 616, 747, 830
NaeI GCCGGC 1 cut(s) 1146
NciI CCSGG 3 cut(s) 311, 320, 473
NcoI CCATGG 2 cut(s) 331, 1163
NdeII GATC 2 cut(s) 372, 529
NgoMIV GCCGGC 1 cut(s) 1144
NlaIII CATG 4 cut(s) 335, 557, 1075, 1167
NlaIV GGNNCC 4 cut(s) 309, 618, 897, 1122
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 3 cut(s) 79, 481, 788
PagI TCATGA 2 cut(s) 553, 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 1084
PdiI GCCGGC 1 cut(s) 1146
PfeI GAWTC 6 cut(s) 400, 497, 518, 734, 803, 818
PkrI GCNGC 4 cut(s) 166, 316, 961, 964
PleI GAGTC 4 cut(s) 454, 785, 1083, 1163
PpsI GAGTC 4 cut(s) 454, 785, 1083, 1163
Ppu21I YACGTR 2 cut(s) 146, 489
PpuMI RGGWCCY 2 cut(s) 286, 307
Psp5II RGGWCCY 2 cut(s) 286, 307
PspN4I GGNNCC 4 cut(s) 309, 618, 897, 1122
PspPI GGNCC 4 cut(s) 286, 307, 513, 534
PspPPI RGGWCCY 2 cut(s) 286, 307
PstI CTGCAG 1 cut(s) 835
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
Rsr2I CGGWCCG 1 cut(s) 534
RsrII CGGWCCG 1 cut(s) 534
SatI GCNGC 4 cut(s) 165, 315, 960, 963
Sau3AI GATC 2 cut(s) 372, 529
Sau96I GGNCC 4 cut(s) 286, 307, 513, 534
SchI GAGTC 4 cut(s) 455, 785, 1084, 1164
ScrFI CCNGG 3 cut(s) 311, 320, 473
SduI GDGCHC 3 cut(s) 108, 938, 1032
SfaNI GCATC 3 cut(s) 161, 176, 703
SfcI CTRYAG 1 cut(s) 831
SinI GGWCC 4 cut(s) 286, 307, 513, 534
SnaBI TACGTA 1 cut(s) 489
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 8 cut(s) 69, 140, 196, 261, 641, 684, 764, 1067
SsiI CCGC 9 cut(s) 299, 315, 522, 614, 659, 716, 741, 960, 1117
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 309, 318, 471
StyI CCWWGG 2 cut(s) 331, 1163
TaaI ACNGT 1 cut(s) 853
TaiI ACGT 2 cut(s) 148, 491
TaqI TCGA 2 cut(s) 347, 794
TaqII GACCGA 1 cut(s) 522
TasI AATT 8 cut(s) 69, 140, 196, 261, 641, 684, 764, 1067
TauI GCSGC 2 cut(s) 317, 962
TfiI GAWTC 6 cut(s) 400, 497, 518, 734, 803, 818
TscAI CASTG 4 cut(s) 165, 532, 840, 1146
TseFI GTSAC 3 cut(s) 79, 481, 788
TseI GCWGC 2 cut(s) 164, 962
Tsp45I GTSAC 3 cut(s) 79, 481, 788
TspDTI ATGAA 5 cut(s) 17, 828, 1022, 1060, 1110
TspRI CASTG 4 cut(s) 165, 532, 840, 1146
VneI GTGCAC 1 cut(s) 1028
VpaK11BI GGWCC 4 cut(s) 286, 307, 513, 534
XapI RAATTY 3 cut(s) 196, 641, 764
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.